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ONTOLOGY REPORT - ANNOTATIONS


Term:retinol metabolic process
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Accession:GO:0042572 term browser browse the term
Definition:The chemical reactions and pathways involving retinol, one of the three compounds that makes up vitamin A.
Synonyms:exact_synonym: retinol metabolism;   vitamin A1 alcohol metabolic process;   vitamin A1 alcohol metabolism;   vitamin A1 metabolic process;   vitamin A1 metabolism
 xref: Wikipedia:Retinol



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retinol metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Adh1 alcohol dehydrogenase 1 (class I) involved_in
acts_upstream_of_or_within
IBA
ISO
PMID:21873635
MGI:2180099|MGI:2180100|MGI:97876 (MGI:1338643|PMID:10358022), (MGI:2675573|PMID:12851412), (MGI:3510590|PMID:15193143)
RGD PMID:10358022 PMID:12851412 PMID:15193143 PMID:21873635 MGI:1338643 MGI:2675573 MGI:3510590, RGD:13792537 NCBI chr 2:226,797,303...226,808,892
Ensembl chr 2:226,797,303...226,808,892
JBrowse link
G Adh4 alcohol dehydrogenase 4 (class II), pi polypeptide involved_in ISS
ISO
GO_REF:0000024
(PMID:16787387), (PMID:17279314)
UniProt
RGD
PMID:16787387 PMID:17279314 GO_REF:0000024 NCBI chr 2:226,948,717...226,966,747 JBrowse link
G Adh6 alcohol dehydrogenase 6 (class V) involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 2:226,903,208...226,934,564
Ensembl chr 2:226,903,250...226,934,534
JBrowse link
G Adh6a alcohol dehydrogenase 6A (class V) involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 2:226,823,775...226,846,005
Ensembl chr 2:226,823,730...226,846,003
JBrowse link
G Adh7 alcohol dehydrogenase 7 (class IV), mu or sigma polypeptide acts_upstream_of_or_within
involved_in
IDA
ISO
IEA
IBA
MGI:2180102 (MGI:1338643|PMID:10358022), (MGI:1340177|PMID:10402668)
GO_REF:0000107
PMID:21873635
RGD
Ensembl
PMID:10358022 PMID:10402668 PMID:10829036 PMID:21873635 GO_REF:0000107 MGI:1338643 MGI:1340177, RGD:631904, RGD:13792537 NCBI chr 2:226,748,724...226,763,183
Ensembl chr 2:226,741,788...226,763,182
JBrowse link
G Akr1b1 aldo-keto reductase family 1 member B involved_in IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr 4:62,932,033...62,946,126
Ensembl chr 4:62,932,031...62,946,157
JBrowse link
G Akr1b10 aldo-keto reductase family 1 member B10 IDA RGD PMID:20709016 RGD:6903952 NCBI chr 4:63,038,459...63,060,336
Ensembl chr 4:63,040,169...63,053,852
JBrowse link
G Aldh1a1 aldehyde dehydrogenase 1 family, member A1 involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:2667220 (MGI:2675573|PMID:12851412)
GO_REF:0000041
Ensembl
RGD
UniProt
PMID:12851412 GO_REF:0000041 GO_REF:0000107 MGI:2675573 NCBI chr 1:218,000,470...218,152,962
Ensembl chr 1:218,042,127...218,152,961
JBrowse link
G Aldh1a2 aldehyde dehydrogenase 1 family, member A2 involved_in IEA GO_REF:0000041 UniProt GO_REF:0000041 NCBI chr 8:71,877,850...71,957,107
Ensembl chr 8:71,877,850...71,957,107
JBrowse link
G Aldh1a3 aldehyde dehydrogenase 1 family, member A3 involved_in IEA GO_REF:0000041 UniProt GO_REF:0000041 NCBI chr 1:119,982,272...120,017,416
Ensembl chr 1:119,982,277...120,017,436
JBrowse link
G Awat2 acyl-CoA wax alcohol acyltransferase 2 involved_in IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr  X:65,482,240...65,490,500
Ensembl chr  X:65,481,929...65,527,625
JBrowse link
G Bco1 beta-carotene oxygenase 1 involved_in IEA GO_REF:0000041 UniProt GO_REF:0000041 NCBI chr19:45,149,250...45,186,102
Ensembl chr19:45,149,265...45,186,101
JBrowse link
G Cel carboxyl ester lipase involved_in IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr 3:11,883,532...11,891,035
Ensembl chr 3:11,883,532...11,891,035
JBrowse link
G Ces1d carboxylesterase 1D involved_in IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr19:13,873,490...13,912,035 JBrowse link
G Ces1e carboxylesterase 1E involved_in IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr19:13,833,154...13,869,627 JBrowse link
G Ces1f carboxylesterase 1F involved_in IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr19:13,796,623...13,822,113 JBrowse link
G Ces2a carboxylesterase 2A involved_in IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr19:129,428...136,480
Ensembl chr19:129,428...136,480
JBrowse link
G Ces2c carboxylesterase 2C involved_in IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr 1:260,391,190...260,398,757
Ensembl chr 1:260,388,902...260,398,790
JBrowse link
G Ces2e carboxylesterase 2E involved_in IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr19:157,447...172,822
Ensembl chr19:157,407...172,856
JBrowse link
G Cyp1a1 cytochrome P450, family 1, subfamily a, polypeptide 1 involved_in ISS
IEA
ISO
GO_REF:0000024
GO_REF:0000041
(PMID:10681376)
UniProt
RGD
PMID:10681376 GO_REF:0000024 GO_REF:0000041 NCBI chr 8:58,096,021...58,102,130
Ensembl chr 8:58,096,077...58,102,125
JBrowse link
G Cyp1a2 cytochrome P450, family 1, subfamily a, polypeptide 2 involved_in IEA
ISS
ISO
GO_REF:0000041
GO_REF:0000024
(PMID:10681376)
UniProt
RGD
PMID:10681376 GO_REF:0000024 GO_REF:0000041 NCBI chr 8:58,075,367...58,082,255
Ensembl chr 8:58,075,367...58,082,312
JBrowse link
G Cyp1b1 cytochrome P450, family 1, subfamily b, polypeptide 1 involved_in IEA
ISO
ISS
GO_REF:0000002
(MGI:5572883|PMID:15258110)
GO_REF:0000041
(PMID:10681376), (PMID:15258110)
GO_REF:0000107
GO_REF:0000024
InterPro
RGD
UniProt
Ensembl
PMID:10681376 PMID:15258110 GO_REF:0000002 GO_REF:0000024 GO_REF:0000041 GO_REF:0000107 MGI:5572883 NCBI chr 6:15,342,312...15,350,886
Ensembl chr 6:15,342,344...15,350,917
JBrowse link
G Cyp2d4 cytochrome P450, family 2, subfamily d, polypeptide 4 involved_in ISO (PMID:10681376) RGD PMID:10681376 NCBI chr 7:113,882,584...113,891,754
Ensembl chr 7:113,881,618...113,891,759
JBrowse link
G Cyp2j4 cytochrome P450, family 2, subfamily j, polypeptide 4 involved_in IEA GO_REF:0000041 UniProt GO_REF:0000041 NCBI chr 5:111,179,981...111,207,490
Ensembl chr 5:111,178,703...111,244,794
JBrowse link
G Cyp3a2 cytochrome P450, family 3, subfamily a, polypeptide 2 involved_in ISO (PMID:10681376) RGD PMID:10681376 NCBI chr12:9,207,986...9,230,038
Ensembl chr12:9,015,383...9,285,008
JBrowse link
G Dgat1 diacylglycerol O-acyltransferase 1 involved_in IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr 7:108,223,860...108,235,413
Ensembl chr 7:108,218,524...108,234,299
JBrowse link
G Dgat2 diacylglycerol O-acyltransferase 2 involved_in IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr 1:153,454,078...153,484,432
Ensembl chr 1:153,454,080...153,484,428
JBrowse link
G Dhrs13 dehydrogenase/reductase 13 involved_in IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr10:62,920,743...62,925,952 JBrowse link
G Dhrs3 dehydrogenase/reductase 3 involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 5:156,747,939...156,782,420
Ensembl chr 5:156,747,962...156,782,417
JBrowse link
G Lipe lipase E, hormone sensitive type involved_in IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr 1:80,965,612...80,984,313
Ensembl chr 1:80,965,627...80,984,310
JBrowse link
G Lrat lecithin retinol acyltransferase involved_in
acts_upstream_of_or_within
IDA
ISO
IEA
(MGI:6414681|PMID:28758396)
MGI:3038935|MGI:97879 (MGI:3775853|PMID:18093970)
(PMID:10819989)
GO_REF:0000041
GO_REF:0000002
RGD
UniProt
InterPro
PMID:10819989 PMID:18093970 PMID:28758396 PMID:2253789 PMID:14642897 More... GO_REF:0000002 GO_REF:0000041 MGI:3775853 MGI:6414681, RGD:1599829, RGD:6484737, RGD:1599832, RGD:1599831 NCBI chr 2:168,264,093...168,273,155
Ensembl chr 2:168,266,877...168,273,619
JBrowse link
G Plb1 phospholipase B1 IDA RGD PMID:8117729 RGD:6903951 NCBI chr 6:24,087,051...24,227,167
Ensembl chr 6:24,089,214...24,210,117
JBrowse link
G Pnlip pancreatic lipase involved_in IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr 1:257,774,012...257,811,656
Ensembl chr 1:257,798,581...257,811,654
JBrowse link
G Pnpla2 patatin-like phospholipase domain containing 2 involved_in IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr 1:196,552,723...196,557,805
Ensembl chr 1:196,552,723...196,557,805
JBrowse link
G Pnpla4 patatin like phospholipase domain containing 4 involved_in IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr  X:42,313,554...42,318,451
Ensembl chr  X:42,305,373...42,318,552
JBrowse link
G Rbp1 retinol binding protein 1 acts_upstream_of_or_within IDA
ISO
MGI:2181412|MGI:87921 (MGI:3510590|PMID:15193143), (MGI:3575475|PMID:15765518) RGD PMID:15193143 PMID:15765518 PMID:14642897 MGI:3510590 MGI:3575475, RGD:6484737 NCBI chr 8:99,025,218...99,046,740
Ensembl chr 8:99,025,206...99,046,743
JBrowse link
G Rbp2 retinol binding protein 2 TAS RGD PMID:3029082 RGD:729693 NCBI chr 8:99,079,293...99,104,489
Ensembl chr 8:99,079,104...99,104,473
JBrowse link
G Rbp4 retinol binding protein 4 involved_in
acts_upstream_of_or_within
ISO (PMID:10232633)
MGI:1891259 (MGI:3775853|PMID:18093970)
RGD PMID:10232633 PMID:18093970 MGI:3775853 NCBI chr 1:235,893,917...235,901,315
Ensembl chr 1:235,893,917...235,901,399
JBrowse link
G Rdh10 retinol dehydrogenase 10 involved_in ISO
IEA
(PMID:19458327)
GO_REF:0000041
RGD
UniProt
PMID:19458327 GO_REF:0000041 NCBI chr 5:3,186,671...3,215,572
Ensembl chr 5:3,188,445...3,215,572
JBrowse link
G Rdh11 retinol dehydrogenase 11 involved_in ISO (MGI:6189614|PMID:29567832) RGD PMID:29567832 MGI:6189614 NCBI chr 6:97,979,377...97,995,252
Ensembl chr 6:97,979,378...97,995,252
JBrowse link
G Rdh12 retinol dehydrogenase 12 involved_in ISO (PMID:12226107)
(MGI:5442470|PMID:22621924)
RGD PMID:12226107 PMID:22621924 MGI:5442470 NCBI chr 6:98,015,465...98,028,388
Ensembl chr 6:98,015,465...98,028,388
JBrowse link
G Rdh13 retinol dehydrogenase 13 involved_in IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr 1:69,373,014...69,401,454
Ensembl chr 1:69,373,113...69,400,908
JBrowse link
G Rdh14 retinol dehydrogenase 14 acts_upstream_of_or_within
involved_in
ISO (MGI:5618338|PMID:25533474)
(MGI:6271140|PMID:12226107)
RGD PMID:12226107 PMID:25533474 MGI:5618338 MGI:6271140 NCBI chr 6:33,156,569...33,161,712
Ensembl chr 6:33,156,569...33,161,712
JBrowse link
G Rdh16 retinol dehydrogenase 16 involved_in IDA
IEA
GO_REF:0000041 UniProt
RGD
PMID:7499345 GO_REF:0000041, RGD:1299624 NCBI chr 7:63,616,724...63,624,120
Ensembl chr 7:63,597,536...63,624,124
JBrowse link
G Rdh7 retinol dehydrogenase 7 involved_in IEA GO_REF:0000041 UniProt GO_REF:0000041 NCBI chr 7:63,676,016...63,689,375 JBrowse link
G Rdh8 retinol dehydrogenase 8 acts_upstream_of_or_within ISO (MGI:3584232|PMID:15755727) RGD PMID:15755727 MGI:3584232 NCBI chr 8:19,353,191...19,360,462
Ensembl chr 8:19,353,191...19,360,462
JBrowse link
G Retsat retinol saturase involved_in ISS
ISO
IBA
IEA
PMID:15358783
(MGI:3522397|PMID:15358783)
PMID:21873635
GO_REF:0000107
RGD
Ensembl
PMID:15358783 PMID:15358783 PMID:21873635 GO_REF:0000107 MGI:3522397, RGD:8553455, RGD:13792537 NCBI chr 4:104,653,306...104,662,069
Ensembl chr 4:104,653,155...104,668,310
JBrowse link
G Rpe65 retinoid isomerohydrolase RPE65 IDA RGD PMID:3603006 RGD:9585656 NCBI chr 2:248,766,497...248,798,403
Ensembl chr 2:248,766,612...248,798,403
JBrowse link
G Sdr16c5 short chain dehydrogenase/reductase family 16C, member 5 involved_in IBA
ISO
PMID:21873635
(PMID:18926804), (PMID:19102727)
RGD PMID:18926804 PMID:19102727 PMID:21873635 RGD:13792537 NCBI chr 5:17,018,813...17,043,974
Ensembl chr 5:17,018,813...17,040,970
JBrowse link
G Ttr transthyretin involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr18:11,941,791...11,951,008
Ensembl chr18:11,943,789...11,951,008
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 19504
    cellular process 18357
      cellular metabolic process 10733
        cellular hormone metabolic process 145
          retinol metabolic process 50
Path 2
Term Annotations click to browse term
  biological_process 19504
    metabolic process 11814
      primary metabolic process 10544
        lipid metabolic process 1365
          cellular lipid metabolic process 1021
            isoprenoid metabolic process 119
              terpenoid metabolic process 93
                diterpenoid metabolic process 84
                  retinoid metabolic process 75
                    retinol metabolic process 50
paths to the root