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ONTOLOGY REPORT - ANNOTATIONS


Term:retinol metabolic process
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Accession:GO:0042572 term browser browse the term
Definition:The chemical reactions and pathways involving retinol, one of the three compounds that makes up vitamin A.
Synonyms:exact_synonym: retinol metabolism;   vitamin A1 alcohol metabolic process;   vitamin A1 alcohol metabolism;   vitamin A1 metabolic process;   vitamin A1 metabolism
 xref: Wikipedia:Retinol


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retinol metabolic process term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Adh1 alcohol dehydrogenase 1 (class I) IBA
ISO
PMID:21873635
MGI:2180099|MGI:2180100|MGI:97876 (MGI:1338643|PMID:10358022), (MGI:2675573|PMID:12851412), (MGI:3510590|PMID:15193143)
RGD PMID:10358022, PMID:12851412, PMID:15193143, PMID:21873635 MGI:1338643, MGI:2675573, MGI:3510590, RGD:13792537 NCBI chr 2:243,550,655...243,562,243
Ensembl chr 2:243,550,627...243,687,857
JBrowse link
G Adh4 alcohol dehydrogenase 4 (class II), pi polypeptide ISO
ISS
(PMID:16787387), (PMID:17279314)
GO_REF:0000024
RGD
UniProt
PMID:16787387, PMID:17279314 GO_REF:0000024 NCBI chr 2:243,702,035...243,720,063
Ensembl chr 2:243,700,784...243,740,899
JBrowse link
G Adh6 alcohol dehydrogenase 6 (class V) IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 2:243,656,568...243,687,857
Ensembl chr 2:243,550,627...243,687,857
JBrowse link
G Adh6a alcohol dehydrogenase 6A (class V) IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 2:243,577,086...243,599,357
Ensembl chr 2:243,577,082...243,599,400
JBrowse link
G Adh7 alcohol dehydrogenase 7 (class IV), mu or sigma polypeptide IDA
ISO
IBA
IEA
MGI:2180102 (MGI:1338643|PMID:10358022), (MGI:1340177|PMID:10402668)
PMID:21873635
GO_REF:0000107
RGD
Ensembl
PMID:10358022, PMID:10402668, PMID:10829036, PMID:21873635 GO_REF:0000107, MGI:1338643, MGI:1340177, RGD:631904, RGD:13792537 NCBI chr 2:243,500,540...243,516,865
Ensembl chr 2:243,502,073...243,516,532
JBrowse link
G Akr1b1 aldo-keto reductase family 1 member B IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr 4:61,706,866...61,720,959
Ensembl chr 4:61,706,864...61,720,956
JBrowse link
G Akr1b10 aldo-keto reductase family 1 member B10 IDA RGD PMID:20709016 RGD:6903952 NCBI chr 4:61,813,265...61,830,371
Ensembl chr 4:61,771,970...61,828,657
JBrowse link
G Aldh1a1 aldehyde dehydrogenase 1 family, member A1 IEA
ISO
GO_REF:0000041
MGI:2667220 (MGI:2675573|PMID:12851412)
GO_REF:0000107
UniProt
RGD
Ensembl
PMID:12851412 GO_REF:0000041, GO_REF:0000107, MGI:2675573 NCBI chr 1:238,222,689...238,264,381
Ensembl chr 1:238,222,521...238,264,330
JBrowse link
G Aldh1a2 aldehyde dehydrogenase 1 family, member A2 IEA GO_REF:0000041 UniProt GO_REF:0000041 NCBI chr 8:77,640,234...77,719,488
Ensembl chr 8:77,640,222...77,719,489
JBrowse link
G Aldh1a3 aldehyde dehydrogenase 1 family, member A3 IEA GO_REF:0000041 UniProt GO_REF:0000041 NCBI chr 1:127,302,920...127,337,828
Ensembl chr 1:127,301,128...127,337,882
JBrowse link
G Awat2 acyl-CoA wax alcohol acyltransferase 2 IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr  X:70,224,761...70,233,021
Ensembl chr  X:70,224,654...70,270,693
JBrowse link
G Bco1 beta-carotene oxygenase 1 IEA GO_REF:0000041 UniProt GO_REF:0000041 NCBI chr19:49,637,059...49,673,577
Ensembl chr19:49,637,016...49,673,808
JBrowse link
G Cel carboxyl ester lipase IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr 3:7,134,021...7,141,522
Ensembl chr 3:7,134,021...7,141,522
JBrowse link
G Cyp1a1 cytochrome P450, family 1, subfamily a, polypeptide 1 ISO
IEA
ISS
(PMID:10681376)
GO_REF:0000041
GO_REF:0000024
RGD
UniProt
PMID:10681376 GO_REF:0000024, GO_REF:0000041 NCBI chr 8:62,472,087...62,478,122
Ensembl chr 8:62,472,095...62,478,147
JBrowse link
G Cyp1a2 cytochrome P450, family 1, subfamily a, polypeptide 2 ISO
IEA
ISS
(PMID:10681376)
GO_REF:0000041
GO_REF:0000024
RGD
UniProt
PMID:10681376 GO_REF:0000024, GO_REF:0000041 NCBI chr 8:62,451,360...62,458,244
Ensembl chr 8:62,451,329...62,458,301
JBrowse link
G Cyp1b1 cytochrome P450, family 1, subfamily b, polypeptide 1 IEA
ISO
ISS
GO_REF:0000002
(MGI:5572883|PMID:15258110)
GO_REF:0000041
GO_REF:0000024
(PMID:10681376), (PMID:15258110)
GO_REF:0000107
InterPro
RGD
UniProt
Ensembl
PMID:10681376, PMID:15258110 GO_REF:0000002, GO_REF:0000024, GO_REF:0000041, GO_REF:0000107, MGI:5572883 NCBI chr 6:2,308,179...2,316,739
Ensembl chr 6:2,307,808...2,316,722
JBrowse link
G Cyp2d4 cytochrome P450, family 2, subfamily d, polypeptide 4 ISO (PMID:10681376) RGD PMID:10681376 NCBI chr 7:123,599,264...123,608,436
Ensembl chr 7:123,599,266...123,608,436
JBrowse link
G Dgat1 diacylglycerol O-acyltransferase 1 IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr 7:117,566,363...117,576,735
Ensembl chr 7:117,566,368...117,576,737
JBrowse link
G Dgat2 diacylglycerol O-acyltransferase 2 IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr 1:164,113,459...164,143,818
Ensembl chr 1:164,113,459...164,143,818
JBrowse link
G Dhrs13 dehydrogenase/reductase 13 IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr10:65,329,407...65,334,533
Ensembl chr10:65,329,940...65,334,500
JBrowse link
G Dhrs3 dehydrogenase/reductase 3 IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 5:162,809,090...162,843,385
Ensembl chr 5:162,808,646...162,843,383
JBrowse link
G Lipe lipase E, hormone sensitive type IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr 1:82,248,031...82,266,727
Ensembl chr 1:82,248,046...82,266,727
JBrowse link
G LOC100911615 patatin-like phospholipase domain-containing protein 2-like IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr 1:213,997,721...214,002,811
Ensembl chr 1:213,997,709...214,002,815
Ensembl chr 1:213,997,709...214,002,815
JBrowse link
G Lrat lecithin retinol acyltransferase IDA
ISO
IEA
MGI:3038935|MGI:97879 (MGI:3775853|PMID:18093970), (MGI:6414681|PMID:28758396)
GO_REF:0000002
(PMID:10819989)
GO_REF:0000041
RGD
InterPro
UniProt
PMID:10819989, PMID:18093970, PMID:28758396, PMID:2253789, PMID:14642897, PMID:9244401, PMID:8460936 GO_REF:0000002, GO_REF:0000041, MGI:3775853, MGI:6414681, RGD:1599829, RGD:6484737, RGD:1599832, RGD:1599831 NCBI chr 2:181,896,304...181,905,366
Ensembl chr 2:181,896,305...181,905,300
JBrowse link
G Plb1 phospholipase B1 IDA RGD PMID:8117729 RGD:6903951 NCBI chr 6:25,375,699...25,507,108
Ensembl chr 6:25,397,537...25,507,073
JBrowse link
G Pnpla2 patatin-like phospholipase domain containing 2 IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr 1:214,434,638...214,439,720
Ensembl chr 1:214,434,626...214,439,720
JBrowse link
G Pnpla4 patatin like phospholipase domain containing 4 IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr  X:45,519,406...45,522,988
Ensembl chr  X:45,519,228...45,522,665
JBrowse link
G Rbp1 retinol binding protein 1 IDA
ISO
MGI:2181412|MGI:87921 (MGI:3510590|PMID:15193143), (MGI:3575475|PMID:15765518) RGD PMID:15193143, PMID:15765518, PMID:14642897 MGI:3510590, MGI:3575475, RGD:6484737 NCBI chr 8:106,449,321...106,470,842
Ensembl chr 8:106,449,321...106,470,842
JBrowse link
G Rbp2 retinol binding protein 2 TAS RGD PMID:3029082 RGD:729693 NCBI chr 8:106,479,253...106,527,726
Ensembl chr 8:106,503,504...106,527,711
JBrowse link
G Rbp4 retinol binding protein 4 ISO (PMID:10232633)
MGI:1891259 (MGI:3775853|PMID:18093970)
RGD PMID:10232633, PMID:18093970 MGI:3775853 NCBI chr 1:256,806,476...256,813,678
Ensembl chr 1:256,806,472...256,813,711
JBrowse link
G Rdh10 retinol dehydrogenase 10 IEA
ISO
GO_REF:0000041
(PMID:19458327)
UniProt
RGD
PMID:19458327 GO_REF:0000041 NCBI chr 5:2,605,265...2,631,905
Ensembl chr 5:2,603,505...2,632,030
JBrowse link
G Rdh11 retinol dehydrogenase 11 ISO (MGI:6189614|PMID:29567832) RGD PMID:29567832 MGI:6189614 NCBI chr 6:102,356,498...102,372,618
Ensembl chr 6:102,356,492...102,372,611
JBrowse link
G Rdh12 retinol dehydrogenase 12 ISO (PMID:12226107)
(MGI:5442470|PMID:22621924)
RGD PMID:12226107, PMID:22621924 MGI:5442470 NCBI chr 6:102,392,828...102,405,750
Ensembl chr 6:102,392,828...102,405,750
JBrowse link
G Rdh13 retinol dehydrogenase 13 IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr 1:72,956,017...72,983,811
Ensembl chr 1:72,956,026...72,984,350
JBrowse link
G Rdh14 retinol dehydrogenase 14 ISO (MGI:5618338|PMID:25533474), (MGI:6271140|PMID:12226107) RGD PMID:12226107, PMID:25533474 MGI:5618338, MGI:6271140 NCBI chr 6:36,106,926...36,112,069
Ensembl chr 6:36,107,147...36,112,064
JBrowse link
G Rdh16 retinol dehydrogenase 16 IDA
IEA
GO_REF:0000041 UniProt PMID:7499345 GO_REF:0000041, RGD:1299624 NCBI chr 7:71,058,150...71,072,685
Ensembl chr 7:70,980,422...71,072,689
JBrowse link
G Rdh7 retinol dehydrogenase 7 IEA GO_REF:0000041 UniProt GO_REF:0000041 NCBI chr 7:71,125,358...71,164,014 JBrowse link
G Rdh8 retinol dehydrogenase 8 ISO (MGI:3584232|PMID:15755727) RGD PMID:15755727 MGI:3584232 NCBI chr 8:21,835,065...21,842,374
Ensembl chr 8:21,835,103...21,842,374
JBrowse link
G Retsat retinol saturase IEA
ISO
IBA
ISS
GO_REF:0000107
(MGI:3522397|PMID:15358783)
PMID:21873635
Ensembl
RGD
PMID:15358783, PMID:21873635, PMID:15358783 GO_REF:0000107, MGI:3522397, RGD:13792537, RGD:8553455 NCBI chr 4:100,465,365...100,474,128
Ensembl chr 4:100,465,170...100,474,301
JBrowse link
G Rpe65 retinoid isomerohydrolase RPE65 IDA RGD PMID:3603006 RGD:9585656 NCBI chr 2:266,141,581...266,169,197
Ensembl chr 2:266,141,581...266,169,197
JBrowse link
G Sdr16c5 short chain dehydrogenase/reductase family 16C, member 5 ISO
IBA
(PMID:18926804), (PMID:19102727)
PMID:21873635
RGD PMID:18926804, PMID:19102727, PMID:21873635 RGD:13792537 NCBI chr 5:16,904,926...16,930,111
Ensembl chr 5:16,904,926...16,930,075
JBrowse link
G Ttr transthyretin IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr18:15,532,963...15,542,180
Ensembl chr18:15,532,963...15,540,177
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 20020
    metabolic process 12263
      cellular metabolic process 11073
        cellular hormone metabolic process 127
          retinol metabolic process 42
Path 2
Term Annotations click to browse term
  biological_process 20020
    metabolic process 12263
      primary metabolic process 10900
        lipid metabolic process 1373
          cellular lipid metabolic process 1022
            isoprenoid metabolic process 117
              terpenoid metabolic process 92
                diterpenoid metabolic process 82
                  retinoid metabolic process 73
                    retinol metabolic process 42
paths to the root

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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.