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ONTOLOGY REPORT - ANNOTATIONS


Term:odontogenesis of dentin-containing tooth
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Accession:GO:0042475 term browser browse the term
Definition:The process whose specific outcome is the progression of a dentin-containing tooth over time, from its formation to the mature structure. A dentin-containing tooth is a hard, bony organ borne on the jaw or other bone of a vertebrate, and is composed mainly of dentin, a dense calcified substance, covered by a layer of enamel.
Comment:Note that placoid scales found in the cartilaginous fishes presumably develop through the same processes, but are found on the dermis, rather than in the mouth or pharynx. See http://en.wikipedia.org/wiki/Placoid_scale#Placoid_scales.
Synonyms:exact_synonym: odontogenesis of dentine-containing teeth;   odontogenesis of dentine-containing tooth
 broad_synonym: odontogeny;   odontosis;   tooth development
 only_in_taxon: NCBITaxon:7711 ! Chordata


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odontogenesis of dentin-containing tooth term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Acvr2b activin A receptor type 2B JBrowse link 8 128,087,308 128,126,776 RGD:1600115
RGD:1624291
G Adm adrenomedullin JBrowse link 1 175,443,189 175,447,260 RGD:2325629
G Ambn ameloblastin JBrowse link 14 21,239,887 21,252,534 RGD:1600115
G Amelx amelogenin, X-linked JBrowse link X 26,439,197 26,450,495 RGD:1624291
G Amtn amelotin JBrowse link 14 21,282,488 21,301,966 RGD:2304068
RGD:13792537
RGD:1624291
RGD:8554564
G Ankrd11 ankyrin repeat domain 11 JBrowse link 19 55,703,831 55,862,446 RGD:1624291
G Bax BCL2 associated X, apoptosis regulator JBrowse link 1 101,451,801 101,457,207 RGD:1624291
RGD:1600115
G Bcl11b BAF chromatin remodeling complex subunit BCL11B JBrowse link 6 131,834,097 131,927,251 RGD:1624291
G Bcl2l11 BCL2 like 11 JBrowse link 3 120,726,906 120,764,192 RGD:1624291
G Bmp2 bone morphogenetic protein 2 JBrowse link 3 126,335,963 126,346,771 RGD:1624291
RGD:1600115
G Bmp4 bone morphogenetic protein 4 JBrowse link 15 20,776,060 20,791,013 RGD:1600115
RGD:1624291
G Bmp7 bone morphogenetic protein 7 JBrowse link 3 170,879,972 170,955,820 RGD:1624291
G Bmpr1a bone morphogenetic protein receptor type 1A JBrowse link 16 10,758,278 10,852,170 RGD:1624291
G Bsg basigin (Ok blood group) JBrowse link 7 12,875,536 12,882,753 RGD:2289060
G Car2 carbonic anhydrase 2 JBrowse link 2 88,097,740 88,112,868 RGD:1600721
G Ccdc154 coiled-coil domain containing 154 JBrowse link 10 14,518,240 14,529,920 RGD:1624291
G Chuk component of inhibitor of nuclear factor kappa B kinase complex JBrowse link 1 263,848,829 263,884,354 RGD:1624291
G Ctnna1 catenin alpha 1 JBrowse link 18 27,923,229 28,055,972 RGD:2289810
G Ctnnb1 catenin beta 1 JBrowse link 8 129,601,511 129,628,378 RGD:2289810
RGD:1600115
RGD:1624291
G Dlx1 distal-less homeobox 1 JBrowse link 3 58,164,931 58,169,521 RGD:1624291
RGD:1600115
G Dlx2 distal-less homeobox 2 JBrowse link 3 58,180,088 58,181,971 RGD:1624291
RGD:1600115
G Dlx3 distal-less homeobox 3 JBrowse link 10 82,937,971 82,943,367 RGD:1624291
G Dspp dentin sialophosphoprotein JBrowse link 14 6,926,972 6,933,079 RGD:1599800
G Eda ectodysplasin-A JBrowse link X 69,730,123 70,222,693 RGD:1624291
G Edar ectodysplasin-A receptor JBrowse link 20 28,179,132 28,263,092 RGD:1624291
G Edaradd EDAR-associated death domain JBrowse link 17 90,802,280 90,843,476 RGD:1624291
G Enam enamelin JBrowse link 14 21,194,635 21,219,529 RGD:1624291
G Fgf10 fibroblast growth factor 10 JBrowse link 2 51,673,480 51,747,533 RGD:1624291
G Fgf4 fibroblast growth factor 4 JBrowse link 1 218,024,537 218,029,539 RGD:1624291
G Foxc1 forkhead box C1 JBrowse link 17 33,947,501 33,951,484 RGD:1624291
G Fst follistatin JBrowse link 2 46,537,589 46,544,813 RGD:1624291
G Gata6 GATA binding protein 6 JBrowse link 18 2,415,821 2,447,087 RGD:2314196
G Gli2 GLI family zinc finger 2 JBrowse link 13 34,829,021 35,049,172 RGD:1624291
G Gli3 GLI family zinc finger 3 JBrowse link 17 52,294,942 52,569,036 RGD:1624291
G Gnao1 G protein subunit alpha o1 JBrowse link 19 11,513,201 11,669,578 RGD:13513970
G Hand1 heart and neural crest derivatives expressed 1 JBrowse link 10 43,250,729 43,253,296 RGD:1624291
G Hand2 heart and neural crest derivatives expressed 2 JBrowse link 16 36,371,489 36,373,551 RGD:1624291
RGD:1600115
G Hdac1 histone deacetylase 1 JBrowse link 5 147,716,664 147,743,723 RGD:1624291
G Hdac2 histone deacetylase 2 JBrowse link 20 43,084,870 43,108,198 RGD:1624291
G Itga6 integrin subunit alpha 6 JBrowse link 3 58,442,904 58,515,124 RGD:1624291
G Jag2 jagged canonical Notch ligand 2 JBrowse link 6 137,711,144 137,733,331 RGD:1624291
RGD:1600115
G Lama5 laminin subunit alpha 5 JBrowse link 3 175,553,042 175,601,112 RGD:1624291
G Lef1 lymphoid enhancer binding factor 1 JBrowse link 2 236,232,115 236,345,061 RGD:1600115
RGD:1624291
G Lhx8 LIM homeobox 8 JBrowse link 2 260,572,205 260,598,744 RGD:1624291
G Lrp4 LDL receptor related protein 4 JBrowse link 3 80,362,643 80,416,684 RGD:1624291
G Lrp6 LDL receptor related protein 6 JBrowse link 4 168,194,054 168,323,962 RGD:1624291
RGD:13792537
G Msx1 msh homeobox 1 JBrowse link 14 77,712,262 77,716,061 RGD:1624291
G Nf2 neurofibromin 2 JBrowse link 14 84,996,905 85,088,547 RGD:1624291
RGD:1600115
G Nfic nuclear factor I/C JBrowse link 7 11,151,941 11,179,544 RGD:1624291
G Nkx2-3 NK2 homeobox 3 JBrowse link 1 263,361,238 263,371,043 RGD:1624291
G Odam odontogenic, ameloblast associated JBrowse link 14 21,842,990 21,852,216 RGD:1624291
RGD:13792537
RGD:1600115
G Pdgfra platelet derived growth factor receptor alpha JBrowse link 14 35,527,926 35,581,130 RGD:1624291
RGD:1600115
G Pitx2 paired-like homeodomain 2 JBrowse link 2 233,602,732 233,621,059 RGD:2289007
G Rogdi rogdi atypical leucine zipper JBrowse link 10 10,761,477 10,766,096 RGD:1624291
G Runx2 RUNX family transcription factor 2 JBrowse link 9 18,564,743 18,773,092 RGD:1600115
RGD:1624291
G Scn10a sodium voltage-gated channel alpha subunit 10 JBrowse link 8 128,298,593 128,416,896 RGD:6484223
G Scn5a sodium voltage-gated channel alpha subunit 5 JBrowse link 8 128,169,191 128,266,681 RGD:6484223
G Shh sonic hedgehog signaling molecule JBrowse link 4 718,538 727,691 RGD:1624291
RGD:1600115
G Smo smoothened, frizzled class receptor JBrowse link 4 57,019,941 57,041,779 RGD:1600115
RGD:1624291
G Sostdc1 sclerostin domain containing 1 JBrowse link 6 55,812,820 55,816,994 RGD:1624291
G Tbx1 T-box transcription factor 1 JBrowse link 11 86,552,022 86,561,647 RGD:1600115
RGD:1624291
G Tcf7l2 transcription factor 7 like 2 JBrowse link 1 276,686,911 276,730,517 RGD:1624291
G Tgfb1 transforming growth factor, beta 1 JBrowse link 1 82,480,875 82,497,196 RGD:14995479
G Tnc tenascin C JBrowse link 5 79,789,686 79,874,555 RGD:4889616
G Tp63 tumor protein p63 JBrowse link 11 78,234,853 78,456,559 RGD:1624291
G Traf6 TNF receptor associated factor 6 JBrowse link 3 91,252,829 91,271,607 RGD:1624291
G Wnt6 Wnt family member 6 JBrowse link 9 82,033,543 82,047,172 RGD:1624291
G Wnt7b Wnt family member 7B JBrowse link 7 126,423,418 126,465,724 RGD:1624291
amelogenesis term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Atf2 activating transcription factor 2 JBrowse link 3 60,721,137 60,795,951 RGD:10053659
G Csf3r colony stimulating factor 3 receptor JBrowse link 5 144,031,353 144,051,966 RGD:5134351
G Dspp dentin sialophosphoprotein JBrowse link 14 6,926,972 6,933,079 RGD:1624291
G Enam enamelin JBrowse link 14 21,194,635 21,219,529 RGD:13792537
RGD:1624291
G Klk4 kallikrein-related peptidase 4 JBrowse link 1 99,828,944 99,834,642 RGD:1624291
RGD:13792537
G Klk5 kallikrein related-peptidase 5 JBrowse link 1 99,781,291 99,793,745 RGD:13792537
G Mmp20 matrix metallopeptidase 20 JBrowse link 8 5,823,147 5,875,555 RGD:1624291
RGD:13792537
G Perp PERP, TP53 apoptosis effector JBrowse link 1 14,224,392 14,236,838 RGD:1624291
G Relt RELT, TNF receptor JBrowse link 1 165,884,407 165,902,022 RGD:1624291
G Slc24a4 solute carrier family 24 member 4 JBrowse link 6 126,015,799 126,158,727 RGD:1624291
dentin mineralization term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Tcirg1 T-cell immune regulator 1, ATPase H+ transporting V0 subunit A3 JBrowse link 1 219,126,687 219,139,466 RGD:1624291
dentinogenesis term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Dspp dentin sialophosphoprotein JBrowse link 14 6,926,972 6,933,079 RGD:12911210
RGD:13792537
RGD:1624291
G Fam20c FAM20C, golgi associated secretory pathway kinase JBrowse link 12 17,913,771 17,972,733 RGD:1624291
G Htra1 HtrA serine peptidase 1 JBrowse link 1 201,499,067 201,548,508 RGD:7394756
G Serpine1 serpin family E member 1 JBrowse link 12 22,641,104 22,651,482 RGD:1600115
RGD:1624291
G Slc34a1 solute carrier family 34 member 1 JBrowse link 17 9,747,766 9,762,739 RGD:7243151
G Smpd3 sphingomyelin phosphodiesterase 3 JBrowse link 19 38,237,963 38,321,572 RGD:1624291
RGD:1600115
enamel mineralization term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Amelx amelogenin, X-linked JBrowse link X 26,439,197 26,450,495 RGD:1624291
G Cnnm4 cyclin and CBS domain divalent metal cation transport mediator 4 JBrowse link 9 43,049,587 43,088,690 RGD:1624291
G Fam20a FAM20A, golgi associated secretory pathway pseudokinase JBrowse link 10 97,962,467 98,017,171 RGD:1624291
RGD:13792537
G Fam20c FAM20C, golgi associated secretory pathway kinase JBrowse link 12 17,913,771 17,972,733 RGD:1624291
RGD:13792537
G Foxo1 forkhead box O1 JBrowse link 2 141,451,234 141,527,016 RGD:10044263
G Msx2 msh homeobox 2 JBrowse link 17 11,683,862 11,689,527 RGD:1624291
RGD:1600115
G Nectin1 nectin cell adhesion molecule 1 JBrowse link 8 48,094,233 48,198,499 RGD:1624291
G Ppara peroxisome proliferator activated receptor alpha JBrowse link 7 126,618,872 126,687,282 RGD:1624291
G Stim1 stromal interaction molecule 1 JBrowse link 1 167,373,894 167,533,412 RGD:1624291
RGD:1600115
G Tbx1 T-box transcription factor 1 JBrowse link 11 86,552,022 86,561,647 RGD:1624291
RGD:1600115
G Tcirg1 T-cell immune regulator 1, ATPase H+ transporting V0 subunit A3 JBrowse link 1 219,126,687 219,139,466 RGD:1624291
G Wdr72 WD repeat domain 72 JBrowse link 8 80,965,734 81,125,710 RGD:1624291
negative regulation of odontogenesis of dentin-containing tooth term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Rspo2 R-spondin 2 JBrowse link 7 81,919,911 82,059,659 RGD:1624291
G Tnfrsf11b TNF receptor superfamily member 11B JBrowse link 7 93,798,580 93,826,586 RGD:1624174
RGD:1624291
positive regulation of enamel mineralization term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Amtn amelotin JBrowse link 14 21,282,488 21,301,966 RGD:1624291
RGD:13792537
RGD:1600115
G Dspp dentin sialophosphoprotein JBrowse link 14 6,926,972 6,933,079 RGD:1624291
G Enam enamelin JBrowse link 14 21,194,635 21,219,529 RGD:1624291
RGD:13792537
G Odaph odontogenesis associated phosphoprotein JBrowse link 14 17,575,295 17,583,214 RGD:1624291
RGD:13792537
RGD:1600115
positive regulation of odontogenesis of dentin-containing tooth term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Csf1 colony stimulating factor 1 JBrowse link 2 210,522,370 210,550,546 RGD:1624291
G Ngfr nerve growth factor receptor JBrowse link 10 83,389,828 83,408,061 RGD:1624291
RGD:1600115
G Prkcb protein kinase C, beta JBrowse link 1 192,233,569 192,575,339 RGD:1625521
regulation of enamel mineralization term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Dicer1 dicer 1 ribonuclease III JBrowse link 6 128,388,084 128,453,234 RGD:1624291
G Dmp1 dentin matrix acidic phosphoprotein 1 JBrowse link 14 6,889,851 6,923,961 RGD:1624291
RGD:1600115
regulation of odontogenesis of dentin-containing tooth term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Apcdd1 APC down-regulated 1 JBrowse link 18 58,270,398 58,300,982 RGD:1600115
G Bmp2 bone morphogenetic protein 2 JBrowse link 3 126,335,963 126,346,771 RGD:1624291
RGD:1600115
G Bmp4 bone morphogenetic protein 4 JBrowse link 15 20,776,060 20,791,013 RGD:1624291
RGD:1600115
G Dicer1 dicer 1 ribonuclease III JBrowse link 6 128,388,084 128,453,234 RGD:1624291
G Dmrt3 doublesex and mab-3 related transcription factor 3 JBrowse link 1 243,589,607 243,602,926 RGD:1624291
G Fgf8 fibroblast growth factor 8 JBrowse link 1 265,492,949 265,498,965 RGD:1624291
G Ift88 intraflagellar transport 88 JBrowse link 15 37,690,417 37,786,855 RGD:1624291
G Runx2 RUNX family transcription factor 2 JBrowse link 9 18,564,743 18,773,092 RGD:1624291
RGD:1600115
G Wnt10a Wnt family member 10A JBrowse link 9 82,053,581 82,066,047 RGD:1624291

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 19332
    developmental process 6637
      anatomical structure morphogenesis 2820
        animal organ morphogenesis 1132
          odontogenesis 149
            odontogenesis of dentin-containing tooth 103
              amelogenesis + 26
              dentin secretion 0
              dentinogenesis + 7
              negative regulation of odontogenesis of dentin-containing tooth + 2
              positive regulation of odontogenesis of dentin-containing tooth + 7
              regulation of odontogenesis of dentin-containing tooth + 19
              tooth placode formation 0
Path 2
Term Annotations click to browse term
  biological_process 19332
    developmental process 6637
      anatomical structure development 6106
        multicellular organism development 5578
          system development 5099
            animal organ development 3897
              animal organ morphogenesis 1132
                odontogenesis 149
                  odontogenesis of dentin-containing tooth 103
                    amelogenesis + 26
                    dentin secretion 0
                    dentinogenesis + 7
                    negative regulation of odontogenesis of dentin-containing tooth + 2
                    positive regulation of odontogenesis of dentin-containing tooth + 7
                    regulation of odontogenesis of dentin-containing tooth + 19
                    tooth placode formation 0
paths to the root

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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.