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ONTOLOGY REPORT - ANNOTATIONS

Term:middle ear morphogenesis
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Accession:GO:0042474 term browser browse the term
Definition:The process in which the anatomical structures of the middle ear are generated and organized. The middle ear is the air-filled cavity within the skull of vertebrates that lies between the outer ear and the inner ear. It is linked to the pharynx (and therefore to outside air) via the Eustachian tube and in mammals contains the three ear ossicles, which transmit auditory vibrations from the outer ear (via the tympanum) to the inner ear (via the oval window).

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middle ear morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Edn1 endothelin 1 ISO MGI:1857637 (MGI:65725|PMID:8152482) RGD PMID:8152482 MGI:65725 NCBI chr17:22,136,814...22,143,745
Ensembl chr17:22,137,324...22,143,324 		JBrowse link
G Eya1 EYA transcriptional coactivator and phosphatase 1 ISO MGI:2150426 (MGI:1344210|PMID:10471511) RGD PMID:10471511 MGI:1344210 NCBI chr 5:4,275,728...4,495,525
Ensembl chr 5:4,373,626...4,513,142 		JBrowse link
G Eya4 EYA transcriptional coactivator and phosphatase 4 ISO MGI:3775095 (MGI:3774741|PMID:18219393) RGD PMID:18219393 MGI:3774741 NCBI chr 1:23,237,617...23,611,580
Ensembl chr 1:23,409,408...23,610,164 		JBrowse link
G Fgfr1 Fibroblast growth factor receptor 1 ISO MGI:3574787 (MGI:3527944|PMID:15630379) RGD PMID:15630379 MGI:3527944 NCBI chr16:71,265,390...71,319,046
Ensembl chr16:71,266,248...71,319,449 		JBrowse link
G Gas1 growth arrest-specific 1 ISO MGI:2388397 (MGI:3713422|PMID:17525797) RGD PMID:17525797 MGI:3713422 NCBI chr17:4,846,116...4,849,350
Ensembl chr17:4,846,789...4,847,940 		JBrowse link
G Gsc goosecoid homeobox ISO (MGI:3035838|PMID:14973294) RGD PMID:14973294 MGI:3035838 NCBI chr 6:128,147,181...128,149,220
Ensembl chr 6:128,147,181...128,149,220 		JBrowse link
G Hoxa2 homeobox A2 ISO MGI:102778|MGI:1857530|MGI:2385711 (MGI:3525808|PMID:15634706), (MGI:3587518|PMID:15861402), (MGI:3608156|PMID:16221728) RGD PMID:15634706 PMID:15861402 PMID:16221728 MGI:3525808 MGI:3587518 MGI:3608156 NCBI chr 4:82,130,441...82,134,846
Ensembl chr 4:82,131,329...82,133,605 		JBrowse link
G Insig1 insulin induced gene 1 ISO MGI:1920249 (MGI:3689278|PMID:16955138) RGD PMID:16955138 MGI:3689278 NCBI chr 4:342,302...350,515
Ensembl chr 4:342,302...350,515 		JBrowse link
G Insig2 insulin induced gene 2 ISO MGI:1916289 (MGI:3689278|PMID:16955138) RGD PMID:16955138 MGI:3689278 NCBI chr13:37,264,818...37,292,718
Ensembl chr13:37,266,312...37,287,458 		JBrowse link
G Msx1 msh homeobox 1 ISO MGI:1933766 (MGI:3611627|PMID:16330189) RGD PMID:16330189 MGI:3611627 NCBI chr14:77,712,262...77,716,061
Ensembl chr14:77,712,240...77,716,059 		JBrowse link
G Myc MYC proto-oncogene, bHLH transcription factor ISO MGI:2178233|MGI:2386570 (MGI:3712581|PMID:17523175) RGD PMID:17523175 MGI:3712581 NCBI chr 7:102,586,313...102,591,240
Ensembl chr 7:102,586,313...102,591,240 		JBrowse link
G Naglu N-acetyl-alpha-glucosaminidase ISO MGI:1934018 (MGI:3769195|PMID:17712420) RGD PMID:17712420 MGI:3769195 NCBI chr10:88,979,363...88,986,879
Ensembl chr10:88,979,383...88,986,867 		JBrowse link
G Nkx3-2 NK3 homeobox 2 ISO MGI:1931319 (MGI:3035838|PMID:14973294) RGD PMID:14973294 MGI:3035838 NCBI chr14:73,813,531...73,818,489
Ensembl chr14:73,813,528...73,815,757 		JBrowse link
G Nog noggin involved_in ISO
IEA		 (PMID:10080184)
GO_REF:0000107		 RGD
Ensembl		 PMID:10080184 GO_REF:0000107 NCBI chr10:76,811,759...76,813,386
Ensembl chr10:76,811,759...76,813,386 		JBrowse link
G Osr1 odd-skipped related transcription factor 1 involved_in ISS
ISO		 GO_REF:0000024
UniProtKB:Q91ZD1 (MGI:3848564|PMID:19389375)		 UniProt
RGD		 PMID:19389375 GO_REF:0000024 MGI:3848564 NCBI chr 6:35,314,431...35,321,458
Ensembl chr 6:35,314,444...35,321,667 		JBrowse link
G Osr2 odd-skipped related transciption factor 2 involved_in ISS
ISO		 GO_REF:0000024
(MGI:3848564|PMID:19389375)		 UniProt
RGD		 PMID:19389375 GO_REF:0000024 MGI:3848564 NCBI chr 7:74,047,820...74,055,096
Ensembl chr 7:74,047,814...74,055,256 		JBrowse link
G Prkra protein activator of interferon induced protein kinase EIF2AK2 involved_in IEA
ISO		 GO_REF:0000107
MGI:3626341 (MGI:3623660|PMID:16571658)		 Ensembl
RGD		 PMID:16571658 GO_REF:0000107 MGI:3623660 NCBI chr 3:63,489,081...63,507,918
Ensembl chr 3:63,489,074...63,507,926 		JBrowse link
G Prrx1 paired related homeobox 1 ISO MGI:1857640|MGI:98218 (MGI:1306737|PMID:9729491), (MGI:73363|PMID:7758948) RGD PMID:7758948 PMID:9729491 MGI:1306737 MGI:73363 NCBI chr13:81,147,038...81,215,559
Ensembl chr13:81,147,348...81,214,546 		JBrowse link
G Prrx2 paired related homeobox 2 ISO MGI:97712 (MGI:1306737|PMID:9729491) RGD PMID:9729491 MGI:1306737 NCBI chr 3:9,681,871...9,718,051
Ensembl chr 3:9,681,871...9,718,051 		JBrowse link
G Rpl38 ribosomal protein L38 ISO MGI:1861228 (MGI:4888466|PMID:21062742) RGD PMID:21062742 MGI:4888466 NCBI chr10:103,198,424...103,202,059
Ensembl chr 2:199,479,007...199,479,309 		JBrowse link
G Six1 SIX homeobox 1 ISO MGI:2655195 (MGI:2671031|PMID:12874121) RGD PMID:12874121 MGI:2671031 NCBI chr 6:95,929,060...95,934,296
Ensembl chr 6:95,929,060...95,934,296 		JBrowse link
G Six2 SIX homeobox 2 ISO MGI:96174 (MGI:3525808|PMID:15634706) RGD PMID:15634706 MGI:3525808 NCBI chr 6:8,952,572...8,955,893
Ensembl chr 6:8,952,572...8,956,276 		JBrowse link
G Tbx1 T-box transcription factor 1 involved_in ISS
ISO		 GO_REF:0000024
MGI:1932522|MGI:2179190|MGI:2179191|MGI:3619149 (MGI:3530686|PMID:15652707), (MGI:3629255|PMID:16600992), (MGI:4822099|PMID:20501333)		 UniProt
RGD		 PMID:15652707 PMID:16600992 PMID:20501333 GO_REF:0000024 MGI:3530686 MGI:3629255 MGI:4822099 NCBI chr11:86,552,022...86,561,647
Ensembl chr11:86,552,022...86,560,969 		JBrowse link
G Tshz1 teashirt zinc finger homeobox 1 ISO MGI:3721421 (MGI:3720547|PMID:17586487) RGD PMID:17586487 MGI:3720547 NCBI chr18:80,860,995...80,907,744
Ensembl chr18:80,862,372...80,865,584 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 20078
    developmental process 6848
      anatomical structure morphogenesis 2891
        embryonic morphogenesis 693
          middle ear morphogenesis 24
Path 2
Term Annotations click to browse term
  biological_process 20078
    developmental process 6848
      anatomical structure development 6308
        multicellular organism development 5783
          system development 5311
            animal organ development 4062
              sensory organ development 697
                ear development 271
                  ear morphogenesis 140
                    middle ear morphogenesis 24
paths to the root