Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Behavioral & Substance Use Disorder Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Advanced Search (OLGA)

ONTOLOGY REPORT - ANNOTATIONS

Term:inner ear morphogenesis
go back to main search page
Accession:GO:0042472 term browser browse the term
Definition:The process in which the anatomical structures of the inner ear are generated and organized. The inner ear is the structure in vertebrates that contains the organs of balance and hearing. It consists of soft hollow sensory structures (the membranous labyrinth) containing fluid (endolymph) surrounded by fluid (perilymph) and encased in a bony cavity (the bony labyrinth). It consists of two chambers, the sacculus and utriculus, from which arise the cochlea and semicircular canals respectively.


show annotations for term's descendants           Sort by:
inner ear morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Abr ABR activator of RhoGEF and GTPase acts_upstream_of_or_within ISO MGI:88141 (PMID:11921339) RGD PMID:11921339 NCBI chr10:61,760,743...61,959,526
Ensembl chr10:61,760,743...61,959,467 		JBrowse link
G Aldh1a3 aldehyde dehydrogenase 1 family, member A3 acts_upstream_of_or_within IEA
ISO 		GO_REF:0000107
MGI:3043947 (PMID:23536097) 		Ensembl
RGD		 PMID:23536097 GO_REF:0000107 NCBI chr 1:129,392,516...129,436,552
Ensembl chr 1:129,392,516...129,427,777 		JBrowse link
G Atoh1 atonal bHLH transcription factor 1 acts_upstream_of_or_within IEA
ISO 		GO_REF:0000107
MGI:2155983|MGI:2155984 (PMID:15543141), (PMID:16145671) 		Ensembl
RGD		 PMID:15543141 PMID:16145671 GO_REF:0000107 NCBI chr 4:95,241,933...95,244,028
Ensembl chr 4:95,241,933...95,244,019 		JBrowse link
G Atp2b2 ATPase plasma membrane Ca2+ transporting 2 acts_upstream_of_or_within ISO MGI:1857876 (PMID:9668038) RGD PMID:9668038 NCBI chr 4:148,450,207...148,763,653
Ensembl chr 4:148,450,207...148,696,239 		JBrowse link
G Atp6v1b1 ATPase H+ transporting V1 subunit B1 involved_in
NOT|involved_in 		ISS
ISO 		GO_REF:0000024
(PMID:12782355)
(PMID:19639346) 		UniProt
RGD		 PMID:12782355 PMID:19639346 GO_REF:0000024 NCBI chr 4:117,781,444...117,800,103
Ensembl chr 4:117,781,444...117,800,103 		JBrowse link
G Atp8a2 ATPase phospholipid transporting 8A2 involved_in IEA
ISO 		GO_REF:0000107
(PMID:24413176) 		Ensembl
RGD		 PMID:24413176 GO_REF:0000107 NCBI chr15:37,993,507...38,526,408
Ensembl chr15:38,002,305...38,526,212 		JBrowse link
G Bcr BCR activator of RhoGEF and GTPase acts_upstream_of_or_within ISO MGI:107771 (PMID:11921339) RGD PMID:11921339 NCBI chr20:13,468,732...13,596,333
Ensembl chr20:13,468,732...13,596,333 		JBrowse link
G Cdh23 cadherin-related 23 acts_upstream_of_or_within IEA
ISO 		GO_REF:0000107
MGI:1856681|MGI:2665714 (PMID:15925194), (PMID:7610888) 		Ensembl
RGD		 PMID:7610888 PMID:15925194 GO_REF:0000107 NCBI chr20:28,783,124...29,165,624
Ensembl chr20:28,783,564...29,165,332 		JBrowse link
G Celsr1 cadherin, EGF LAG seven-pass G-type receptor 1 acts_upstream_of_or_within ISO MGI:1862019|MGI:2668337 (PMID:12842012) RGD PMID:12842012 NCBI chr 7:118,867,450...119,004,859
Ensembl chr 7:118,867,450...119,004,856 		JBrowse link
G Chd7 chromodomain helicase DNA binding protein 7 involved_in
acts_upstream_of_or_within 		ISO
IEA
IBA 		(PMID:15300250)
MGI:3511552 (PMID:15353999)
GO_REF:0000117
GO_REF:0000107
GO_REF:0000033 		RGD
UniProt
Ensembl
GO_Central		 PMID:15300250 PMID:15353999 GO_REF:0000033 GO_REF:0000107 GO_REF:0000117 NCBI chr 5:26,609,245...26,792,736
Ensembl chr 5:26,609,407...26,792,734 		JBrowse link
G Chrna10 cholinergic receptor nicotinic alpha 10 subunit acts_upstream_of_or_within IEA
ISO 		GO_REF:0000107
MGI:3774038 (PMID:18077337) 		Ensembl
RGD		 PMID:18077337 GO_REF:0000107 NCBI chr 1:165,898,932...165,905,348
Ensembl chr 1:165,899,261...165,903,458 		JBrowse link
G Chrna9 cholinergic receptor nicotinic alpha 9 subunit acts_upstream_of_or_within IEA
ISO 		GO_REF:0000107
MGI:2158742 (PMID:18077337) 		Ensembl
RGD		 PMID:18077337 GO_REF:0000107 NCBI chr14:42,588,948...42,595,669
Ensembl chr14:42,588,948...42,595,669 		JBrowse link
G Col11a1 collagen type XI alpha 1 chain acts_upstream_of_or_within ISO MGI:1856399 (PMID:1952599) RGD PMID:1952599 NCBI chr 2:204,509,136...204,702,264
Ensembl chr 2:204,509,136...204,702,264 		JBrowse link
G Col2a1 collagen type II alpha 1 chain acts_upstream_of_or_within IEA
ISO 		GO_REF:0000107
MGI:1857275 (PMID:9165353) 		Ensembl
RGD		 PMID:9165353 GO_REF:0000107 NCBI chr 7:130,977,561...131,006,627
Ensembl chr 7:130,977,561...131,006,627 		JBrowse link
G Dlx5 distal-less homeobox 5 acts_upstream_of_or_within IEA
ISO 		GO_REF:0000107
MGI:101927|MGI:2180474 (PMID:12142028), (PMID:16900517) 		Ensembl
RGD		 PMID:12142028 PMID:16900517 GO_REF:0000107 NCBI chr 4:35,965,579...35,969,973
Ensembl chr 4:35,965,579...35,969,845 		JBrowse link
G Dlx6 distal-less homeobox 6 acts_upstream_of_or_within IEA
ISO 		GO_REF:0000107
MGI:101926 (PMID:16900517) 		Ensembl
RGD		 PMID:16900517 GO_REF:0000107 NCBI chr 4:35,951,005...35,956,354
Ensembl chr 4:35,951,005...35,956,354 		JBrowse link
G Efna2 ephrin A2 TAS RGD PMID:10792438 RGD:1300471 NCBI chr 7:10,167,091...10,177,719
Ensembl chr 7:10,167,091...10,177,719 		JBrowse link
G Ephb2 Eph receptor B2 involved_in IEA
ISO 		GO_REF:0000107
(PMID:10839360) 		Ensembl
RGD		 PMID:10839360 GO_REF:0000107 NCBI chr 5:154,179,065...154,360,459
Ensembl chr 5:154,179,065...154,360,615 		JBrowse link
G Eya1 EYA transcriptional coactivator and phosphatase 1 acts_upstream_of_or_within ISO MGI:1857803|MGI:2150426|MGI:97486 (PMID:10471511), (PMID:15817220), (PMID:16916509) RGD PMID:10471511 PMID:15817220 PMID:16916509 NCBI chr 5:9,646,599...9,884,609
Ensembl chr 5:9,646,591...9,884,614 		JBrowse link
G Fgf10 fibroblast growth factor 10 acts_upstream_of_or_within IEA
ISO 		GO_REF:0000107
MGI:1347464|MGI:1859647 (PMID:11062007), (PMID:16691564) 		Ensembl
RGD		 PMID:11062007 PMID:16691564 GO_REF:0000107 NCBI chr 2:52,533,939...52,610,980
Ensembl chr 2:52,533,939...52,610,980 		JBrowse link
G Fgf8 fibroblast growth factor 8 acts_upstream_of_or_within IEA
ISO 		GO_REF:0000107
MGI:1345138 (PMID:15809037) 		Ensembl
RGD		 PMID:15809037 GO_REF:0000107 NCBI chr 1:254,533,504...254,539,605
Ensembl chr 1:254,533,504...254,539,605 		JBrowse link
G Fgf9 fibroblast growth factor 9 acts_upstream_of_or_within ISO MGI:2135961 (PMID:15328018) RGD PMID:15328018 NCBI chr15:36,325,552...36,369,995
Ensembl chr15:36,325,599...36,367,926 		JBrowse link
G Fgfr1 Fibroblast growth factor receptor 1 acts_upstream_of_or_within IEA
ISO 		GO_REF:0000107
MGI:2153351 (PMID:12194867) 		Ensembl
RGD		 PMID:12194867 GO_REF:0000107 NCBI chr16:73,194,631...73,249,855
Ensembl chr16:73,194,631...73,249,855 		JBrowse link
G Fgfr2 fibroblast growth factor receptor 2 acts_upstream_of_or_within ISO MGI:2153811 (PMID:10934262) RGD PMID:10934262 NCBI chr 1:194,175,703...194,280,914
Ensembl chr 1:194,175,705...194,280,914 		JBrowse link
G Foxg1 forkhead box G1 acts_upstream_of_or_within ISO MGI:1099809|MGI:2388671 (PMID:16691564) RGD PMID:16691564 NCBI chr 6:72,401,582...72,404,392
Ensembl chr 6:72,394,239...72,427,392 		JBrowse link
G Foxi1 forkhead box I1 acts_upstream_of_or_within IEA
ISO 		GO_REF:0000107
MGI:2448634 (PMID:12642503) 		Ensembl
RGD		 PMID:12642503 GO_REF:0000107 NCBI chr10:19,310,466...19,314,405
Ensembl chr10:19,310,482...19,314,405 		JBrowse link
G Frzb frizzled-related protein acts_upstream_of_or_within IEA
ISO 		GO_REF:0000107
MGI:98958 (PMID:18991062) 		Ensembl
RGD		 PMID:18991062 GO_REF:0000107 NCBI chr 3:85,739,162...85,772,168
Ensembl chr 3:85,739,165...85,772,096 		JBrowse link
G Fzd3 frizzled class receptor 3 acts_upstream_of_or_within
involved_in 		IEA
ISO 		GO_REF:0000107
MGI:108474 (PMID:16495441)
GO_REF:0000117 		Ensembl
RGD
UniProt		 PMID:16495441 GO_REF:0000107 GO_REF:0000117 NCBI chr15:43,596,962...43,664,047
Ensembl chr15:43,596,965...43,663,960 		JBrowse link
G Fzd6 frizzled class receptor 6 acts_upstream_of_or_within
involved_in 		IEA
ISO 		GO_REF:0000107
MGI:108476 (PMID:16495441)
GO_REF:0000117 		Ensembl
RGD
UniProt		 PMID:16495441 GO_REF:0000107 GO_REF:0000117 NCBI chr 7:71,939,916...71,971,685
Ensembl chr 7:71,939,973...71,971,680 		JBrowse link
G Gata2 GATA binding protein 2 acts_upstream_of_or_within IEA
ISO 		GO_REF:0000107
MGI:4818492 (PMID:20652952) 		Ensembl
RGD		 PMID:20652952 GO_REF:0000107 NCBI chr 4:122,211,501...122,225,058
Ensembl chr 4:122,211,829...122,225,055 		JBrowse link
G Gata3 GATA binding protein 3 acts_upstream_of_or_within IEA
ISO 		GO_REF:0000107
MGI:2153826|MGI:2181200 (PMID:11135239), (PMID:21553382) 		Ensembl
RGD		 PMID:11135239 PMID:21553382 GO_REF:0000107 NCBI chr17:73,544,234...73,575,670
Ensembl chr17:73,553,548...73,575,670 		JBrowse link
G Gbx2 gastrulation brain homeobox 2 acts_upstream_of_or_within IEA
ISO 		GO_REF:0000107
MGI:1857634 (PMID:15829521), (PMID:15996652) 		Ensembl
RGD		 PMID:15829521 PMID:15996652 GO_REF:0000107 NCBI chr 9:97,957,304...97,959,883
Ensembl chr 9:97,957,304...97,959,883 		JBrowse link
G Gfi1 growth factor independent 1 transcriptional repressor acts_upstream_of_or_within ISO MGI:2449921 (PMID:12441305) RGD PMID:12441305 NCBI chr14:2,185,489...2,204,191
Ensembl chr14:2,187,286...2,196,730 		JBrowse link
G Hmx2 H6 family homeobox 2 acts_upstream_of_or_within IEA
ISO 		GO_REF:0000107
MGI:107160|MGI:2154542 (PMID:11748138), (PMID:15363417) 		Ensembl
RGD		 PMID:11748138 PMID:15363417 GO_REF:0000107 NCBI chr 1:195,749,284...195,758,347
Ensembl chr 1:195,749,284...195,756,945 		JBrowse link
G Hmx3 H6 family homeobox 3 acts_upstream_of_or_within IEA
ISO 		GO_REF:0000107
MGI:107159|MGI:1857577 (PMID:15363417), (PMID:9435283) 		Ensembl
RGD		 PMID:9435283 PMID:15363417 GO_REF:0000107 NCBI chr 1:195,743,411...195,745,375
Ensembl chr 1:195,743,271...195,746,444 		JBrowse link
G Hoxa1 homeobox A1 acts_upstream_of_or_within ISO MGI:3056069 (PMID:15367676) RGD PMID:15367676 NCBI chr 4:82,586,505...82,589,209
Ensembl chr 4:82,586,505...82,589,209 		JBrowse link
G Insig1 insulin induced gene 1 acts_upstream_of_or_within ISO MGI:1920249 (PMID:16955138) RGD PMID:16955138 NCBI chr 4:8,049,339...8,057,812
Ensembl chr 4:8,049,556...8,057,778 		JBrowse link
G Insig2 insulin induced gene 2 acts_upstream_of_or_within IEA
ISO 		GO_REF:0000107
MGI:1916289 (PMID:16955138) 		Ensembl
RGD		 PMID:16955138 GO_REF:0000107 NCBI chr13:35,025,160...35,052,937
Ensembl chr13:35,025,164...35,047,658 		JBrowse link
G Itga8 integrin subunit alpha 8 acts_upstream_of_or_within IEA
ISO 		GO_REF:0000107
MGI:2181699 (PMID:10742111) 		Ensembl
RGD		 PMID:10742111 GO_REF:0000107 NCBI chr17:80,213,139...80,410,633
Ensembl chr17:80,213,143...80,410,633 		JBrowse link
G Kcnq1 potassium voltage-gated channel subfamily Q member 1 involved_in IEA
ISO 		GO_REF:0000107
MGI:2680653 (PMID:11226272) 		Ensembl
RGD		 PMID:11226272 GO_REF:0000107 NCBI chr 1:207,721,134...208,054,073
Ensembl chr 1:207,721,131...208,054,072 		JBrowse link
G Kcnq4 potassium voltage-gated channel subfamily Q member 4 acts_upstream_of_or_within ISO MGI:3618993 (PMID:16437162) RGD PMID:16437162 NCBI chr 5:139,560,366...139,612,212
Ensembl chr 5:139,560,366...139,612,102 		JBrowse link
G LOC100360522 ribosomal protein P1-like involved_in IEA GO_REF:0000107 Ensembl GO_REF:0000107 NCBI chr17:8,436,843...8,437,954 JBrowse link
G Mafb MAF bZIP transcription factor B acts_upstream_of_or_within IEA
ISO 		GO_REF:0000107
MGI:1856419 (PMID:16325169) 		Ensembl
RGD		 PMID:16325169 GO_REF:0000107 NCBI chr 3:169,417,890...169,419,810
Ensembl chr 3:169,416,945...169,419,975 		JBrowse link
G Myo15a myosin XVA acts_upstream_of_or_within IEA
ISO 		GO_REF:0000107
MGI:1857036 (PMID:11718241), (PMID:14724386) 		Ensembl
RGD		 PMID:11718241 PMID:14724386 GO_REF:0000107 NCBI chr10:45,776,907...45,835,473
Ensembl chr10:45,776,907...45,835,473 		JBrowse link
G Myo6 myosin VI involved_in
acts_upstream_of_or_within 		IBA
ISO 		GO_REF:0000033
MGI:1856555 (PMID:7493015) 		GO_Central
RGD		 PMID:7493015 GO_REF:0000033 NCBI chr 8:89,967,351...90,122,219
Ensembl chr 8:89,967,377...90,122,215 		JBrowse link
G Myo7a myosin VIIA acts_upstream_of_or_within IEA
ISO 		GO_REF:0000107
MGI:1856716|MGI:1860092|MGI:2155422|MGI:3511858 (PMID:11753415), (PMID:15389316), (PMID:5795329) 		Ensembl
RGD		 PMID:5795329 PMID:11753415 PMID:15389316 GO_REF:0000107 NCBI chr 1:161,755,110...161,825,397
Ensembl chr 1:161,755,110...161,825,365 		JBrowse link
G Neurog1 neurogenin 1 involved_in
acts_upstream_of_or_within 		ISO
IEA 		UniProtKB:Q6ZNK6|UniProtKB:Q8TF63 (PMID:23419067)
MGI:2183171 (PMID:16145671)
GO_REF:0000107 		RGD
Ensembl		 PMID:16145671 PMID:23419067 GO_REF:0000107 NCBI chr17:8,368,096...8,369,615
Ensembl chr17:8,368,096...8,369,615 		JBrowse link
G Nr4a3 nuclear receptor subfamily 4, group A, member 3 acts_upstream_of_or_within ISO MGI:3037444 (PMID:11784868) RGD PMID:11784868 NCBI chr 5:67,157,141...67,198,287
Ensembl chr 5:67,157,375...67,198,285 		JBrowse link
G Ntn1 netrin 1 acts_upstream_of_or_within ISO MGI:2137018 (PMID:17616930) RGD PMID:17616930 NCBI chr10:53,398,852...53,597,595
Ensembl chr10:53,398,852...53,584,060 		JBrowse link
G Otop1 otopetrin 1 acts_upstream_of_or_within IEA
ISO 		GO_REF:0000107
MGI:1856638|MGI:2655558 (PMID:12651873) 		Ensembl
RGD		 PMID:12651873 GO_REF:0000107 NCBI chr14:76,717,330...76,744,785
Ensembl chr14:76,716,329...76,744,785 		JBrowse link
G Otx1 orthodenticle homeobox 1 acts_upstream_of_or_within
involved_in 		IEA
ISO 		GO_REF:0000107
MGI:2136272|MGI:97451 (PMID:10225993)
GO_REF:0000117 		Ensembl
RGD
UniProt		 PMID:10225993 GO_REF:0000107 GO_REF:0000117 NCBI chr14:100,283,406...100,290,421
Ensembl chr14:100,283,406...100,290,421 		JBrowse link
G Otx2 orthodenticle homeobox 2 involved_in
acts_upstream_of_or_within 		IEA
ISO 		GO_REF:0000117
MGI:97450 (PMID:10225993) 		UniProt
RGD		 PMID:10225993 GO_REF:0000117 NCBI chr15:24,422,876...24,432,709
Ensembl chr15:24,422,876...24,432,472 		JBrowse link
G Pax2 paired box 2 involved_in
acts_upstream_of_or_within 		ISS
ISO 		GO_REF:0000024
UniProtKB:Q00288 (PMID:20727173), (PMID:8951055)
MGI:109344|MGI:1857673 (PMID:15242798), (PMID:16916509) 		UniProt
RGD		 PMID:8951055 PMID:15242798 PMID:16916509 PMID:20727173 GO_REF:0000024 NCBI chr 1:253,555,447...253,646,623
Ensembl chr 1:253,555,418...253,645,438 		JBrowse link
G Pax8 paired box 8 involved_in IEA
ISO 		GO_REF:0000107
UniProtKB:P32114 (PMID:20727173) 		Ensembl
RGD		 PMID:20727173 GO_REF:0000107 NCBI chr 3:27,584,000...27,641,094
Ensembl chr 3:27,584,002...27,640,631 		JBrowse link
G Pou4f3 POU class 4 homeobox 3 acts_upstream_of_or_within IEA
ISO 		GO_REF:0000107
MGI:1857425 (PMID:12585968) 		Ensembl
RGD		 PMID:12585968 GO_REF:0000107 NCBI chr18:34,641,191...34,643,783
Ensembl chr18:34,641,191...34,643,783 		JBrowse link
G Prrx1 paired related homeobox 1 acts_upstream_of_or_within IEA
ISO 		GO_REF:0000107
MGI:98218 (PMID:9729491) 		Ensembl
RGD		 PMID:9729491 GO_REF:0000107 NCBI chr13:78,136,783...78,205,379
Ensembl chr13:78,136,783...78,204,058 		JBrowse link
G Prrx2 paired related homeobox 2 acts_upstream_of_or_within ISO MGI:97712 (PMID:9729491) RGD PMID:9729491 NCBI chr 3:34,530,331...34,566,284
Ensembl chr 3:34,520,173...34,566,284 		JBrowse link
G Ptprq protein tyrosine phosphatase, receptor type, Q acts_upstream_of_or_within IEA
ISO 		GO_REF:0000107
MGI:2679316 (PMID:14534255) 		Ensembl
RGD		 PMID:14534255 GO_REF:0000107 NCBI chr 7:44,720,916...44,903,291
Ensembl chr 7:44,720,916...44,903,291 		JBrowse link
G Ror2 receptor tyrosine kinase-like orphan receptor 2 acts_upstream_of_or_within ISO MGI:2183225 (PMID:18606138) RGD PMID:18606138 NCBI chr17:12,124,749...12,300,044
Ensembl chr17:12,124,749...12,300,044 		JBrowse link
G Rplp1 ribosomal protein lateral stalk subunit P1 involved_in IEA GO_REF:0000107 Ensembl GO_REF:0000107 NCBI chr 8:71,289,539...71,290,872
Ensembl chr 8:71,289,535...71,290,872 		JBrowse link
G Six1 SIX homeobox 1 acts_upstream_of_or_within IEA
ISO 		GO_REF:0000107
MGI:106034 (PMID:15788460) 		Ensembl
RGD		 PMID:15788460 GO_REF:0000107 NCBI chr 6:97,482,617...97,487,853
Ensembl chr 6:97,482,617...97,487,853 		JBrowse link
G Six4 SIX homeobox 4 acts_upstream_of_or_within ISO MGI:102780 (PMID:15788460) RGD PMID:15788460 NCBI chr 6:97,538,202...97,551,872
Ensembl chr 6:97,538,202...97,551,872 		JBrowse link
G Slitrk6 SLIT and NTRK-like family, member 6 acts_upstream_of_or_within IEA
ISO 		GO_REF:0000107
MGI:4417931 (PMID:19936227) 		Ensembl
RGD		 PMID:19936227 GO_REF:0000107 NCBI chr15:93,977,812...93,984,431
Ensembl chr15:93,969,038...93,984,526 		JBrowse link
G Sobp sine oculis binding protein homolog involved_in
acts_upstream_of_or_within 		IBA
ISO
IEA 		GO_REF:0000033
MGI:1856614 (PMID:16962269)
GO_REF:0000107 		GO_Central
RGD
Ensembl		 PMID:16962269 GO_REF:0000033 GO_REF:0000107 NCBI chr20:48,064,445...48,243,607
Ensembl chr20:48,064,445...48,243,607 		JBrowse link
G Sox2 SRY-box transcription factor 2 acts_upstream_of_or_within ISO MGI:2447995 (PMID:15846349) RGD PMID:15846349 NCBI chr 2:119,465,131...119,467,542
Ensembl chr 2:119,454,541...119,496,350 		JBrowse link
G Spry2 sprouty RTK signaling antagonist 2 acts_upstream_of_or_within IEA
ISO 		GO_REF:0000107
MGI:3578633|MGI:99604 (PMID:15809037) 		Ensembl
RGD		 PMID:15809037 GO_REF:0000107 NCBI chr15:89,106,809...89,111,926
Ensembl chr15:89,103,731...89,115,074 		JBrowse link
G Tbx1 T-box transcription factor 1 involved_in
acts_upstream_of_or_within 		ISS
ISO 		GO_REF:0000024
MGI:2179136|MGI:2179190|MGI:2179191|MGI:3046196|MGI:3619149 (PMID:12913075), (PMID:15084464), (PMID:15652707), (PMID:16600992) 		UniProt
RGD		 PMID:12913075 PMID:15084464 PMID:15652707 PMID:16600992 GO_REF:0000024 NCBI chr11:95,913,610...95,923,392
Ensembl chr11:95,913,610...95,923,392 		JBrowse link
G Tbx3 T-box transcription factor 3 involved_in IEA
ISO 		GO_REF:0000107
UniProtKB:Q60707 (PMID:33795231) 		Ensembl
RGD		 PMID:33795231 GO_REF:0000107 NCBI chr12:42,540,378...42,555,490
Ensembl chr12:42,540,378...42,554,171 		JBrowse link
G Tfap2a transcription factor AP-2 alpha involved_in ISS
ISO 		GO_REF:0000024
(PMID:21204207) 		UniProt
RGD		 PMID:21204207 GO_REF:0000024 NCBI chr17:24,230,064...24,253,219
Ensembl chr17:24,229,910...24,253,219 		JBrowse link
G Tifab TIFA inhibitor involved_in ISO UniProtKB:Q8TF63|UniProtKB:Q92886 (PMID:23419067) RGD PMID:23419067 NCBI chr17:8,438,622...8,441,750
Ensembl chr17:8,433,862...8,444,360 		JBrowse link
G Tmie transmembrane inner ear involved_in
acts_upstream_of_or_within 		IBA
ISO 		GO_REF:0000033
MGI:1857053 (PMID:12140191) 		GO_Central
RGD		 PMID:12140191 GO_REF:0000033 NCBI chr 8:119,728,123...119,743,219
Ensembl chr 8:119,728,313...119,743,219 		JBrowse link
G Ush1c USH1 protein network component harmonin acts_upstream_of_or_within ISO MGI:2651858|MGI:2651859 (PMID:14519688) RGD PMID:14519688 NCBI chr 1:105,831,719...105,880,082
Ensembl chr 1:105,831,723...105,880,082 		JBrowse link
G Ush1g USH1 protein network component sans acts_upstream_of_or_within IEA
ISO 		GO_REF:0000107
MGI:2450561 (PMID:12588793), (PMID:1927362) 		Ensembl
RGD		 PMID:1927362 PMID:12588793 GO_REF:0000107 NCBI chr10:101,055,923...101,062,753
Ensembl chr10:101,057,208...101,062,564 		JBrowse link
G Wnt1 Wnt family member 1 acts_upstream_of_or_within IEA
ISO 		GO_REF:0000107
MGI:98956 (PMID:15961523) 		Ensembl
RGD		 PMID:15961523 GO_REF:0000107 NCBI chr 7:131,817,558...131,821,605
Ensembl chr 7:131,817,558...131,821,605 		JBrowse link
G Wnt3a Wnt family member 3A acts_upstream_of_or_within IEA
ISO 		GO_REF:0000107
MGI:98953 (PMID:15961523) 		Ensembl
RGD		 PMID:15961523 GO_REF:0000107 NCBI chr10:44,533,734...44,577,919
Ensembl chr10:44,533,734...44,577,919 		JBrowse link
G Wnt5a Wnt family member 5A acts_upstream_of_or_within IEA
ISO 		GO_REF:0000107
(PMID:18991062) 		Ensembl
RGD		 PMID:18991062 GO_REF:0000107 NCBI chr16:3,702,300...3,724,860
Ensembl chr16:3,703,665...3,724,860 		JBrowse link
auditory receptor cell morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Mir96 microRNA 96 acts_upstream_of_or_within ISO MGI:4354110 (PMID:19363478) RGD PMID:19363478 NCBI chr 4:59,755,841...59,755,946 JBrowse link
G Rac1 Rac family small GTPase 1 acts_upstream_of_or_within ISO MGI:2663662|MGI:2663669 (PMID:20016102) RGD PMID:20016102 NCBI chr12:16,150,411...16,170,864
Ensembl chr12:16,128,649...16,172,109 		JBrowse link
G Scrib scribble planar cell polarity protein acts_upstream_of_or_within ISO MGI:2139764 (PMID:20215345) RGD PMID:20215345 NCBI chr 7:109,640,034...109,663,354
Ensembl chr 7:109,640,034...109,663,022 		JBrowse link
G Sec24b SEC24 homolog B, COPII coat complex component acts_upstream_of_or_within ISO MGI:2145950|MGI:4440621 (PMID:20215345) RGD PMID:20215345 NCBI chr 2:221,236,897...221,306,986
Ensembl chr 2:221,236,898...221,306,919 		JBrowse link
G Slitrk6 SLIT and NTRK-like family, member 6 acts_upstream_of_or_within IEA
ISO 		GO_REF:0000107
MGI:4417931 (PMID:19936227) 		Ensembl
RGD		 PMID:19936227 GO_REF:0000107 NCBI chr15:93,977,812...93,984,431
Ensembl chr15:93,969,038...93,984,526 		JBrowse link
G Ush1c USH1 protein network component harmonin involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 1:105,831,719...105,880,082
Ensembl chr 1:105,831,723...105,880,082 		JBrowse link
G Wdpcp WD repeat containing planar cell polarity effector acts_upstream_of_or_within IEA
ISO 		GO_REF:0000107
MGI:5558098 (PMID:24302887) 		Ensembl
RGD		 PMID:24302887 GO_REF:0000107 NCBI chr14:99,847,463...100,178,392
Ensembl chr14:99,847,632...100,200,287 		JBrowse link
auditory receptor cell stereocilium organization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ankrd24 ankyrin repeat domain 24 involved_in IEA
ISO 		GO_REF:0000107
(PMID:35175278) 		Ensembl
RGD		 PMID:35175278 GO_REF:0000107 NCBI chr 7:8,712,720...8,731,910
Ensembl chr 7:8,712,722...8,731,910 		JBrowse link
G Atp2b2 ATPase plasma membrane Ca2+ transporting 2 acts_upstream_of_or_within ISO MGI:1856799 (PMID:11875276) RGD PMID:11875276 NCBI chr 4:148,450,207...148,763,653
Ensembl chr 4:148,450,207...148,696,239 		JBrowse link
G Cdh23 cadherin-related 23 acts_upstream_of_or_within IEA
ISO 		GO_REF:0000107
MGI:1856681|MGI:1891428|MGI:2154548 (PMID:11138008), (PMID:15537665), (PMID:17050716), (PMID:7610888), (PMID:8790740)
MGI:1856228|MGI:1856681|MGI:2154548|MGI:2154549 (PMID:11322776), (PMID:12121736), (PMID:23217710), (PMID:9039475) 		Ensembl
RGD		 PMID:7610888 PMID:8790740 PMID:9039475 PMID:11138008 PMID:11322776 More... GO_REF:0000107 NCBI chr20:28,783,124...29,165,624
Ensembl chr20:28,783,564...29,165,332 		JBrowse link
G Clic5 chloride intracellular channel 5 acts_upstream_of_or_within ISO MGI:3663254 (PMID:17021174) RGD PMID:17021174 NCBI chr 9:24,208,455...24,310,964
Ensembl chr 9:24,208,456...24,358,780 		JBrowse link
G Clrn1 clarin 1 acts_upstream_of_or_within IEA
ISO 		GO_REF:0000107
MGI:3850171 (PMID:19414487), (PMID:19423712) 		Ensembl
RGD		 PMID:19414487 PMID:19423712 GO_REF:0000107 NCBI chr 2:145,233,941...145,280,855
Ensembl chr 2:145,233,941...145,280,855 		JBrowse link
G Clrn2 clarin 2 involved_in IEA
ISO 		GO_REF:0000107
(PMID:33496845) 		Ensembl
RGD		 PMID:33496845 GO_REF:0000107 NCBI chr14:69,868,556...69,878,850
Ensembl chr14:69,868,556...69,878,850 		JBrowse link
G Grxcr1 glutaredoxin and cysteine rich domain containing 1 acts_upstream_of_or_within IEA
ISO 		GO_REF:0000107
(PMID:35235570) 		Ensembl
RGD		 PMID:35235570 GO_REF:0000107 NCBI chr14:40,358,077...40,480,493
Ensembl chr14:40,358,077...40,480,493 		JBrowse link
G Grxcr2 glutaredoxin and cysteine rich domain containing 2 acts_upstream_of_or_within IEA
ISO 		GO_REF:0000107
MGI:2139535|MGI:6281113|MGI:6281114 (PMID:30380417) 		Ensembl
RGD		 PMID:30380417 GO_REF:0000107 NCBI chr18:34,235,734...34,249,139
Ensembl chr18:34,235,734...34,371,894 		JBrowse link
G Lhfpl5 LHFPL tetraspan subfamily member 5 acts_upstream_of_or_within IEA
ISO 		GO_REF:0000107
MGI:3718054 (PMID:17876667), (PMID:23217710)
MGI:3055797 (PMID:15905332) 		Ensembl
RGD		 PMID:15905332 PMID:17876667 PMID:23217710 GO_REF:0000107 NCBI chr20:6,634,058...6,644,264
Ensembl chr20:6,633,979...6,644,657 		JBrowse link
G Myo3a myosin IIIA involved_in IEA
ISO 		GO_REF:0000117
MGI:2448580 (PMID:26754646) 		UniProt
RGD		 PMID:26754646 GO_REF:0000117 NCBI chr17:89,451,567...89,667,654
Ensembl chr17:89,451,567...89,667,654 		JBrowse link
G Myo3b myosin IIIB involved_in IEA
ISO 		GO_REF:0000117
MGI:2183924 (PMID:26754646) 		UniProt
RGD		 PMID:26754646 GO_REF:0000117 NCBI chr 3:75,228,017...75,636,272
Ensembl chr 3:75,228,017...75,636,272 		JBrowse link
G Myo7a myosin VIIA acts_upstream_of_or_within IEA
ISO 		GO_REF:0000107
MGI:1860092|MGI:2155422 (PMID:11753415), (PMID:12121736)
(PMID:17050716) 		Ensembl
RGD		 PMID:11753415 PMID:12121736 PMID:17050716 GO_REF:0000107 NCBI chr 1:161,755,110...161,825,397
Ensembl chr 1:161,755,110...161,825,365 		JBrowse link
G Nherf1 NHERF family PDZ scaffold protein 1 acts_upstream_of_or_within ISO MGI:3526430 (PMID:24920589) RGD PMID:24920589 NCBI chr10:100,902,165...100,919,265
Ensembl chr10:100,901,227...100,919,579 		JBrowse link
G Pcdh15 protocadherin related 15 acts_upstream_of_or_within IEA
ISO 		GO_REF:0000107
MGI:1856394|MGI:3505691 (PMID:16887306), (PMID:23217710)
MGI:1855958|MGI:1856394|MGI:1856396|MGI:1890219|MGI:2151877 (PMID:10978835), (PMID:11124469), (PMID:15537665) 		Ensembl
RGD		 PMID:10978835 PMID:11124469 PMID:15537665 PMID:16887306 PMID:23217710 GO_REF:0000107 NCBI chr20:13,996,383...15,495,206
Ensembl chr20:13,999,116...15,493,958 		JBrowse link
G Pdzd7 PDZ domain containing 7 involved_in
acts_upstream_of_or_within 		IBA
ISO
IEA 		GO_REF:0000033
MGI:4433578 (PMID:24334608)
GO_REF:0000107 		GO_Central
RGD
Ensembl		 PMID:24334608 GO_REF:0000033 GO_REF:0000107 NCBI chr 1:253,837,454...253,856,919
Ensembl chr 1:253,837,459...253,855,999 		JBrowse link
G Pls1 plastin 1 involved_in IEA
ISO 		GO_REF:0000107
(PMID:25124451) 		Ensembl
RGD		 PMID:25124451 GO_REF:0000107 NCBI chr 8:105,196,312...105,306,252
Ensembl chr 8:105,197,455...105,292,447 		JBrowse link
G Rest RE1-silencing transcription factor involved_in ISS
ISO 		GO_REF:0000024
(PMID:29961578) 		UniProt
RGD		 PMID:29961578 GO_REF:0000024 NCBI chr14:31,213,415...31,233,451
Ensembl chr14:31,213,415...31,248,662 		JBrowse link
G Ripor2 RHO family interacting cell polarization regulator 2 involved_in ISO (PMID:27269051) RGD PMID:27269051 NCBI chr17:40,751,771...40,975,611
Ensembl chr17:40,751,771...40,975,337 		JBrowse link
G Scrib scribble planar cell polarity protein acts_upstream_of_or_within ISO MGI:2139764 (PMID:20215345) RGD PMID:20215345 NCBI chr 7:109,640,034...109,663,354
Ensembl chr 7:109,640,034...109,663,022 		JBrowse link
G Sec24b SEC24 homolog B, COPII coat complex component acts_upstream_of_or_within ISO MGI:2145950|MGI:4440621 (PMID:20215345) RGD PMID:20215345 NCBI chr 2:221,236,897...221,306,986
Ensembl chr 2:221,236,898...221,306,919 		JBrowse link
G Sod1 superoxide dismutase 1 involved_in
acts_upstream_of_or_within 		ISS
ISO
IEA 		GO_REF:0000024
MGI:1857872 (PMID:10464373), (PMID:10466888)
GO_REF:0000107 		UniProt
RGD
Ensembl		 PMID:10464373 PMID:10466888 GO_REF:0000024 GO_REF:0000107 NCBI chr11:42,942,742...42,948,399
Ensembl chr11:42,942,678...42,948,399 		JBrowse link
G Strc stereocilin acts_upstream_of_or_within
involved_in 		IEA
ISO 		GO_REF:0000107
(PMID:21165971)
MGI:109575|MGI:3818633 (PMID:18849963), (PMID:30801007) 		Ensembl
RGD		 PMID:18849963 PMID:21165971 PMID:30801007 GO_REF:0000107 NCBI chr 3:128,785,817...128,811,773
Ensembl chr 3:128,789,290...128,808,023 		JBrowse link
G Tecta tectorin alpha acts_upstream_of_or_within IEA
ISO 		GO_REF:0000107
MGI:2153816 (PMID:30801007) 		Ensembl
RGD		 PMID:30801007 GO_REF:0000107 NCBI chr 8:51,604,974...51,676,745
Ensembl chr 8:51,604,975...51,676,722 		JBrowse link
G Tprn taperin involved_in
acts_upstream_of_or_within 		IBA
ISO
IEA 		GO_REF:0000033
MGI:2685697 (PMID:30380417)
GO_REF:0000107 		GO_Central
RGD
Ensembl		 PMID:30380417 GO_REF:0000033 GO_REF:0000107 NCBI chr 3:28,474,322...28,481,800
Ensembl chr 3:28,473,620...28,482,117 		JBrowse link
G Triobp TRIO and F-actin binding protein acts_upstream_of_or_within ISO MGI:4881773 (PMID:20510926) RGD PMID:20510926 NCBI chr 7:112,386,371...112,452,130
Ensembl chr 7:112,386,420...112,442,924 		JBrowse link
G Whrn whirlin involved_in
acts_upstream_of_or_within 		IBA
ISO
IEA 		GO_REF:0000033
MGI:4432119 (PMID:27117407)
GO_REF:0000107 		GO_Central
RGD
Ensembl		 PMID:27117407 GO_REF:0000033 GO_REF:0000107 NCBI chr 5:81,843,820...81,933,400
Ensembl chr 5:81,843,820...81,927,381 		JBrowse link
cochlea morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cthrc1 collagen triple helix repeat containing 1 acts_upstream_of_or_within IEA
ISO 		GO_REF:0000107
MGI:1915838 (PMID:18606138) 		Ensembl
RGD		 PMID:18606138 GO_REF:0000107 NCBI chr 7:72,007,372...72,017,654
Ensembl chr 7:72,007,372...72,017,654 		JBrowse link
G Dvl1 dishevelled segment polarity protein 1 acts_upstream_of_or_within IEA
ISO 		GO_REF:0000107
MGI:106613 (PMID:16116426) 		Ensembl
RGD		 PMID:16116426 GO_REF:0000107 NCBI chr 5:171,738,911...171,750,967
Ensembl chr 5:171,739,133...171,750,966 		JBrowse link
G Dvl2 dishevelled segment polarity protein 2 acts_upstream_of_or_within IEA
ISO 		GO_REF:0000107
MGI:108100|MGI:94941 (PMID:16116426), (PMID:19008950) 		Ensembl
RGD		 PMID:16116426 PMID:19008950 GO_REF:0000107 NCBI chr10:55,222,245...55,231,506
Ensembl chr10:55,222,056...55,231,506 		JBrowse link
G Dvl3 dishevelled segment polarity protein 3 acts_upstream_of_or_within ISO MGI:106613|MGI:2135272 (PMID:19008950) RGD PMID:19008950 NCBI chr11:93,869,834...93,887,013
Ensembl chr11:93,869,834...93,886,903 		JBrowse link
G Eya1 EYA transcriptional coactivator and phosphatase 1 acts_upstream_of_or_within ISO MGI:1857803 (PMID:10072433) RGD PMID:10072433 NCBI chr 5:9,646,599...9,884,609
Ensembl chr 5:9,646,591...9,884,614 		JBrowse link
G Frzb frizzled-related protein acts_upstream_of_or_within IEA
ISO 		GO_REF:0000107
MGI:98958 (PMID:17433286) 		Ensembl
RGD		 PMID:17433286 GO_REF:0000107 NCBI chr 3:85,739,162...85,772,168
Ensembl chr 3:85,739,165...85,772,096 		JBrowse link
G Fzd2 frizzled class receptor 2 acts_upstream_of_or_within IEA
ISO 		GO_REF:0000107
MGI:2135272 (PMID:20940229) 		Ensembl
RGD		 PMID:20940229 GO_REF:0000107 NCBI chr10:88,061,988...88,063,898
Ensembl chr10:88,061,667...88,065,396 		JBrowse link
G Gli2 GLI family zinc finger 2 acts_upstream_of_or_within ISO MGI:1857509 (PMID:17395647) RGD PMID:17395647 NCBI chr13:32,499,678...32,716,418
Ensembl chr13:32,499,678...32,716,418 		JBrowse link
G Grhl3 grainyhead-like transcription factor 3 acts_upstream_of_or_within IEA
ISO 		GO_REF:0000107
MGI:2135272 (PMID:20643356) 		Ensembl
RGD		 PMID:20643356 GO_REF:0000107 NCBI chr 5:153,057,760...153,089,890
Ensembl chr 5:153,057,760...153,089,890 		JBrowse link
G Hoxa1 homeobox A1 involved_in ISO (PMID:16155570) RGD PMID:16155570 NCBI chr 4:82,586,505...82,589,209
Ensembl chr 4:82,586,505...82,589,209 		JBrowse link
G Hpn hepsin involved_in ISS
ISO 		GO_REF:0000024
(PMID:20683358) 		UniProt
RGD		 PMID:20683358 GO_REF:0000024 NCBI chr 1:95,464,468...95,480,169
Ensembl chr 1:95,464,470...95,480,199 		JBrowse link
G LOC100360522 ribosomal protein P1-like involved_in IEA GO_REF:0000107 Ensembl GO_REF:0000107 NCBI chr17:8,436,843...8,437,954 JBrowse link
G Myo3a myosin IIIA involved_in IEA
ISO 		GO_REF:0000117
(PMID:26754646) 		UniProt
RGD		 PMID:26754646 GO_REF:0000117 NCBI chr17:89,451,567...89,667,654
Ensembl chr17:89,451,567...89,667,654 		JBrowse link
G Myo3b myosin IIIB involved_in IEA
ISO 		GO_REF:0000117
(PMID:26754646) 		UniProt
RGD		 PMID:26754646 GO_REF:0000117 NCBI chr 3:75,228,017...75,636,272
Ensembl chr 3:75,228,017...75,636,272 		JBrowse link
G Nectin1 nectin cell adhesion molecule 1 involved_in IEA
ISO 		GO_REF:0000107
(PMID:21798896) 		Ensembl
RGD		 PMID:21798896 GO_REF:0000107 NCBI chr 8:52,998,662...53,061,745
Ensembl chr 8:52,998,662...53,086,664 		JBrowse link
G Nectin3 nectin cell adhesion molecule 3 involved_in IEA
ISO 		GO_REF:0000107
(PMID:21798896) 		Ensembl
RGD		 PMID:21798896 GO_REF:0000107 NCBI chr11:67,825,296...67,931,999
Ensembl chr11:67,827,137...67,871,383 		JBrowse link
G Neurog1 neurogenin 1 involved_in ISO
IEA 		UniProtKB:Q6ZNK6|UniProtKB:Q8TF63 (PMID:23419067)
GO_REF:0000107 		RGD
Ensembl		 PMID:23419067 GO_REF:0000107 NCBI chr17:8,368,096...8,369,615
Ensembl chr17:8,368,096...8,369,615 		JBrowse link
G Pax2 paired box 2 involved_in
acts_upstream_of_or_within 		ISS
ISO 		GO_REF:0000024
MGI:1857673 (PMID:16916509)
UniProtKB:Q00288 (PMID:20727173), (PMID:8951055) 		UniProt
RGD		 PMID:8951055 PMID:16916509 PMID:20727173 GO_REF:0000024 NCBI chr 1:253,555,447...253,646,623
Ensembl chr 1:253,555,418...253,645,438 		JBrowse link
G Pou3f4 POU class 3 homeobox 4 involved_in ISS
ISO 		GO_REF:0000024
UniProtKB:P70323 (PMID:18231833) 		UniProt
RGD		 PMID:18231833 GO_REF:0000024 NCBI chr  X:79,974,808...79,976,085
Ensembl chr  X:79,974,627...79,987,326 		JBrowse link
G Ptk7 protein tyrosine kinase 7 acts_upstream_of_or_within IEA
ISO 		GO_REF:0000107
MGI:3640803 (PMID:20704721) 		Ensembl
RGD		 PMID:20704721 GO_REF:0000107 NCBI chr 9:21,849,756...21,916,077
Ensembl chr 9:21,849,801...21,916,078 		JBrowse link
G Rac1 Rac family small GTPase 1 acts_upstream_of_or_within ISO MGI:2663662|MGI:2663669 (PMID:20016102) RGD PMID:20016102 NCBI chr12:16,150,411...16,170,864
Ensembl chr12:16,128,649...16,172,109 		JBrowse link
G Rplp1 ribosomal protein lateral stalk subunit P1 involved_in IEA GO_REF:0000107 Ensembl GO_REF:0000107 NCBI chr 8:71,289,539...71,290,872
Ensembl chr 8:71,289,535...71,290,872 		JBrowse link
G Six1 SIX homeobox 1 acts_upstream_of_or_within IEA
ISO 		GO_REF:0000107
MGI:2655195 (PMID:12874121) 		Ensembl
RGD		 PMID:12874121 GO_REF:0000107 NCBI chr 6:97,482,617...97,487,853
Ensembl chr 6:97,482,617...97,487,853 		JBrowse link
G Sox9 SRY-box transcription factor 9 involved_in
acts_upstream_of_or_within 		ISS
IEA
ISO 		GO_REF:0000024
GO_REF:0000107
MGI:2385468|MGI:3841145 (PMID:20346939) 		UniProt
Ensembl
RGD		 PMID:20346939 GO_REF:0000024 GO_REF:0000107 NCBI chr10:98,305,744...98,311,250
Ensembl chr10:98,305,744...98,311,250 		JBrowse link
G Tbx1 T-box transcription factor 1 involved_in
acts_upstream_of_or_within 		ISS
ISO 		GO_REF:0000024
MGI:2179136 (PMID:17825816)
UniProtKB:P62515 (PMID:18231833) 		UniProt
RGD		 PMID:17825816 PMID:18231833 GO_REF:0000024 NCBI chr11:95,913,610...95,923,392
Ensembl chr11:95,913,610...95,923,392 		JBrowse link
G Tbx18 T-box transcription factor 18 acts_upstream_of_or_within ISO MGI:3044915 (PMID:18353863) RGD PMID:18353863 NCBI chr 8:97,531,960...97,559,988
Ensembl chr 8:97,531,960...97,559,965 		JBrowse link
G Tbx2 T-box transcription factor 2 involved_in IEA
ISO 		GO_REF:0000107
(PMID:33795231) 		Ensembl
RGD		 PMID:33795231 GO_REF:0000107 NCBI chr10:71,177,082...71,186,275
Ensembl chr10:71,177,082...71,186,275 		JBrowse link
G Tifab TIFA inhibitor involved_in ISO UniProtKB:Q8TF63|UniProtKB:Q92886 (PMID:23419067) RGD PMID:23419067 NCBI chr17:8,438,622...8,441,750
Ensembl chr17:8,433,862...8,444,360 		JBrowse link
G Tshr thyroid stimulating hormone receptor acts_upstream_of_or_within IEA
ISO 		GO_REF:0000107
(PMID:10575115) 		Ensembl
RGD		 PMID:10575115 GO_REF:0000107 NCBI chr 6:116,072,321...116,206,009
Ensembl chr 6:116,072,281...116,206,010 		JBrowse link
G Vangl2 VANGL planar cell polarity protein 2 acts_upstream_of_or_within IEA
ISO 		GO_REF:0000107
MGI:108100|MGI:1857642|MGI:1888513|MGI:2655333|MGI:98958 (PMID:16116426), (PMID:17433286), (PMID:18606138), (PMID:19008950), (PMID:20643356), (PMID:20940229) 		Ensembl
RGD		 PMID:16116426 PMID:17433286 PMID:18606138 PMID:19008950 PMID:20643356 More... GO_REF:0000107 NCBI chr13:86,995,124...87,021,770
Ensembl chr13:86,997,920...87,021,770 		JBrowse link
G Wnt5a Wnt family member 5A acts_upstream_of_or_within IEA
ISO 		GO_REF:0000107
MGI:1857617|MGI:2135272 (PMID:17433286) 		Ensembl
RGD		 PMID:17433286 GO_REF:0000107 NCBI chr16:3,702,300...3,724,860
Ensembl chr16:3,703,665...3,724,860 		JBrowse link
G Zeb1 zinc finger E-box binding homeobox 1 acts_upstream_of_or_within ISO MGI:1861230 (PMID:21980308) RGD PMID:21980308 NCBI chr17:56,644,397...56,811,155
Ensembl chr17:56,644,397...56,810,745 		JBrowse link
otic vesicle formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Fgf10 fibroblast growth factor 10 acts_upstream_of_or_within IEA
ISO 		GO_REF:0000107
MGI:95517 (PMID:14623822) 		Ensembl
RGD		 PMID:14623822 GO_REF:0000107 NCBI chr 2:52,533,939...52,610,980
Ensembl chr 2:52,533,939...52,610,980 		JBrowse link
G Fgf3 fibroblast growth factor 3 acts_upstream_of_or_within ISO MGI:1099809|MGI:99604 (PMID:17601531) RGD PMID:17601531 NCBI chr 1:209,430,457...209,434,832
Ensembl chr 1:209,430,457...209,434,832 		JBrowse link
G Fgf8 fibroblast growth factor 8 acts_upstream_of_or_within IEA
ISO 		GO_REF:0000107
MGI:95517 (PMID:17601531) 		Ensembl
RGD		 PMID:17601531 GO_REF:0000107 NCBI chr 1:254,533,504...254,539,605
Ensembl chr 1:254,533,504...254,539,605 		JBrowse link
G Fgfr2 fibroblast growth factor receptor 2 acts_upstream_of_or_within ISO MGI:2153790 (PMID:9435295) RGD PMID:9435295 NCBI chr 1:194,175,703...194,280,914
Ensembl chr 1:194,175,705...194,280,914 		JBrowse link
G Hesx1 HESX homeobox 1 acts_upstream_of_or_within IEA
ISO 		GO_REF:0000107
MGI:1931124 (PMID:9620767) 		Ensembl
RGD		 PMID:9620767 GO_REF:0000107 NCBI chr16:2,198,589...2,200,694
Ensembl chr16:2,198,589...2,200,694 		JBrowse link
G Sox9 SRY-box transcription factor 9 involved_in
acts_upstream_of_or_within 		ISS
ISO
IEA 		GO_REF:0000024
MGI:1932522|MGI:2385468 (PMID:18377888)
GO_REF:0000107 		UniProt
RGD
Ensembl		 PMID:18377888 GO_REF:0000024 GO_REF:0000107 NCBI chr10:98,305,744...98,311,250
Ensembl chr10:98,305,744...98,311,250 		JBrowse link
G Tcap titin-cap involved_in ISO (PMID:9817758) RGD PMID:9817758 NCBI chr10:83,878,006...83,879,174
Ensembl chr10:83,876,939...83,879,483 		JBrowse link
otic vesicle morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Eya1 EYA transcriptional coactivator and phosphatase 1 acts_upstream_of_or_within ISO MGI:2150426 (PMID:16916509) RGD PMID:16916509 NCBI chr 5:9,646,599...9,884,609
Ensembl chr 5:9,646,591...9,884,614 		JBrowse link
G Tbx1 T-box transcription factor 1 acts_upstream_of_or_within ISO MGI:3046793 (PMID:17074316) RGD PMID:17074316 NCBI chr11:95,913,610...95,923,392
Ensembl chr11:95,913,610...95,923,392 		JBrowse link
otolith formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Otop1 otopetrin 1 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr14:76,717,330...76,744,785
Ensembl chr14:76,716,329...76,744,785 		JBrowse link
G Slc44a4 solute carrier family 44, member 4 involved_in ISS GO_REF:0000024 UniProt GO_REF:0000024 NCBI chr20:3,907,737...3,923,911
Ensembl chr20:3,907,737...3,923,854 		JBrowse link
otolith morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bloc1s5 biogenesis of lysosomal organelles complex 1 subunit 5 acts_upstream_of_or_within ISO MGI:1856106 (PMID:5367369) RGD PMID:5367369 NCBI chr17:26,377,549...26,402,869
Ensembl chr17:26,377,560...26,402,865 		JBrowse link
G Lrig1 leucine-rich repeats and immunoglobulin-like domains 1 acts_upstream_of_or_within
involved_in 		IEA
ISO 		GO_REF:0000107
MGI:2443955 (PMID:24086156)
GO_REF:0000117 		Ensembl
RGD
UniProt		 PMID:24086156 GO_REF:0000107 GO_REF:0000117 NCBI chr 4:128,687,723...128,788,219
Ensembl chr 4:128,687,723...128,788,219 		JBrowse link
G Lrig3 leucine-rich repeats and immunoglobulin-like domains 3 acts_upstream_of_or_within
involved_in 		IEA
ISO 		GO_REF:0000107
MGI:107935 (PMID:24086156)
GO_REF:0000117 		Ensembl
RGD
UniProt		 PMID:24086156 GO_REF:0000107 GO_REF:0000117 NCBI chr 7:63,701,724...63,751,898
Ensembl chr 7:63,701,778...63,752,261 		JBrowse link
G Ttc39c tetratricopeptide repeat domain 39C involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr18:4,043,364...4,162,660
Ensembl chr18:4,080,391...4,165,315 		JBrowse link
positive regulation of otic vesicle morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Stox1 storkhead box 1 involved_in IEA
ISO 		GO_REF:0000107
(PMID:25677106) 		Ensembl
RGD		 PMID:25677106 GO_REF:0000107 NCBI chr20:31,140,993...31,209,126
Ensembl chr20:31,140,993...31,208,877 		JBrowse link
semicircular canal formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Hoxa1 homeobox A1 involved_in ISO (PMID:16155570) RGD PMID:16155570 NCBI chr 4:82,586,505...82,589,209
Ensembl chr 4:82,586,505...82,589,209 		JBrowse link
semicircular canal fusion term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Fgf10 fibroblast growth factor 10 acts_upstream_of_or_within IEA
ISO 		GO_REF:0000107
MGI:1859647 (PMID:15765517) 		Ensembl
RGD		 PMID:15765517 GO_REF:0000107 NCBI chr 2:52,533,939...52,610,980
Ensembl chr 2:52,533,939...52,610,980 		JBrowse link
semicircular canal morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Chd7 chromodomain helicase DNA binding protein 7 acts_upstream_of_or_within IEA
ISO 		GO_REF:0000107
MGI:98493 (PMID:19855134) 		Ensembl
RGD		 PMID:19855134 GO_REF:0000107 NCBI chr 5:26,609,245...26,792,736
Ensembl chr 5:26,609,407...26,792,734 		JBrowse link
G Eya1 EYA transcriptional coactivator and phosphatase 1 acts_upstream_of_or_within ISO MGI:1857803 (PMID:10072433) RGD PMID:10072433 NCBI chr 5:9,646,599...9,884,609
Ensembl chr 5:9,646,591...9,884,614 		JBrowse link
G Fgf10 fibroblast growth factor 10 acts_upstream_of_or_within IEA
ISO 		GO_REF:0000107
MGI:95517 (PMID:17601531) 		Ensembl
RGD		 PMID:17601531 GO_REF:0000107 NCBI chr 2:52,533,939...52,610,980
Ensembl chr 2:52,533,939...52,610,980 		JBrowse link
G Fgf3 fibroblast growth factor 3 acts_upstream_of_or_within ISO MGI:1099809 (PMID:17601531) RGD PMID:17601531 NCBI chr 1:209,430,457...209,434,832
Ensembl chr 1:209,430,457...209,434,832 		JBrowse link
G Nr4a3 nuclear receptor subfamily 4, group A, member 3 acts_upstream_of_or_within ISO MGI:3037444 (PMID:11784868) RGD PMID:11784868 NCBI chr 5:67,157,141...67,198,287
Ensembl chr 5:67,157,375...67,198,285 		JBrowse link
G Sparc secreted protein acidic and cysteine rich involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr10:40,017,065...40,038,816
Ensembl chr10:40,017,075...40,039,268 		JBrowse link
G Tbx1 T-box transcription factor 1 involved_in
acts_upstream_of_or_within 		ISS
ISO 		GO_REF:0000024
MGI:2444748 (PMID:19855134) 		UniProt
RGD		 PMID:19855134 GO_REF:0000024 NCBI chr11:95,913,610...95,923,392
Ensembl chr11:95,913,610...95,923,392 		JBrowse link
G Tbx3 T-box transcription factor 3 involved_in IEA
ISO 		GO_REF:0000107
(PMID:33795231) 		Ensembl
RGD		 PMID:33795231 GO_REF:0000107 NCBI chr12:42,540,378...42,555,490
Ensembl chr12:42,540,378...42,554,171 		JBrowse link
G Zeb1 zinc finger E-box binding homeobox 1 acts_upstream_of_or_within ISO MGI:1861230 (PMID:21980308) RGD PMID:21980308 NCBI chr17:56,644,397...56,811,155
Ensembl chr17:56,644,397...56,810,745 		JBrowse link
vestibular receptor cell morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ptprq protein tyrosine phosphatase, receptor type, Q acts_upstream_of_or_within IEA
ISO 		GO_REF:0000107
MGI:2679316 (PMID:22357859) 		Ensembl
RGD		 PMID:22357859 GO_REF:0000107 NCBI chr 7:44,720,916...44,903,291
Ensembl chr 7:44,720,916...44,903,291 		JBrowse link
vestibular receptor cell stereocilium organization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Pls1 plastin 1 involved_in IEA
ISO 		GO_REF:0000107
(PMID:25124451) 		Ensembl
RGD		 PMID:25124451 GO_REF:0000107 NCBI chr 8:105,196,312...105,306,252
Ensembl chr 8:105,197,455...105,292,447 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 19315
    developmental process 7255
      anatomical structure morphogenesis 3075
        embryonic morphogenesis 710
          inner ear morphogenesis 130
            auditory receptor cell morphogenesis + 31
            cochlea morphogenesis 32
            otic vesicle morphogenesis + 10
            otolith morphogenesis + 6
            semicircular canal morphogenesis + 10
            vestibular receptor cell morphogenesis + 2
Path 2
Term Annotations click to browse term
  biological_process 19315
    developmental process 7255
      anatomical structure development 6748
        multicellular organism development 5415
          embryo development 1376
            embryonic morphogenesis 710
              embryonic organ morphogenesis 343
                ear morphogenesis 155
                  inner ear morphogenesis 130
                    auditory receptor cell morphogenesis + 31
                    cochlea morphogenesis 32
                    otic vesicle morphogenesis + 10
                    otolith morphogenesis + 6
                    semicircular canal morphogenesis + 10
                    vestibular receptor cell morphogenesis + 2
paths to the root