ONTOLOGY REPORT - ANNOTATIONS
Term: inner ear morphogenesis
Accession: GO:0042472
browse the term
Definition: The process in which the anatomical structures of the inner ear are generated and organized. The inner ear is the structure in vertebrates that contains the organs of balance and hearing. It consists of soft hollow sensory structures (the membranous labyrinth) containing fluid (endolymph) surrounded by fluid (perilymph) and encased in a bony cavity (the bony labyrinth). It consists of two chambers, the sacculus and utriculus, from which arise the cochlea and semicircular canals respectively.
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Abr
ABR activator of RhoGEF and GTPase
ISO
MGI:88141 (MGI:3622851|PMID:11921339)
RGD
PMID:11921339
MGI:3622851
NCBI chr10:64,565,121...64,657,079
Ensembl chr10:64,567,268...64,657,089
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Aldh1a3
aldehyde dehydrogenase 1 family, member A3
IEA ISO
GO_REF:0000107 MGI:3043947 (MGI:5488831|PMID:23536097)
Ensembl RGD
PMID:23536097
GO_REF:0000107 MGI:5488831
NCBI chr 1:127,302,920...127,337,828
Ensembl chr 1:127,301,128...127,337,882
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Atoh1
atonal bHLH transcription factor 1
ISO
MGI:2155983|MGI:2155984 (MGI:3525036|PMID:15543141), (MGI:3607238|PMID:16145671)
RGD
PMID:15543141 PMID:16145671
MGI:3525036 MGI:3607238
NCBI chr 4:95,498,003...95,500,098
Ensembl chr 4:95,498,003...95,500,089
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Atp2b2
ATPase plasma membrane Ca2+ transporting 2
ISO
MGI:1857876 (MGI:1275896|PMID:9668038)
RGD
PMID:9668038
MGI:1275896
NCBI chr 4:145,704,779...145,948,997
Ensembl chr 4:145,703,046...146,016,325
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Atp6v1b1
ATPase H+ transporting V1 subunit B1
NOT
ISO ISS
(PMID:19639346) (MGI:2669353|PMID:12782355) GO_REF:0000024
RGD UniProt
PMID:12782355 PMID:19639346
GO_REF:0000024 MGI:2669353
NCBI chr 4:115,417,100...115,435,754
Ensembl chr 4:115,416,580...115,437,206
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Atp8a2
ATPase phospholipid transporting 8A2
IEA
GO_REF:0000107
Ensembl
GO_REF:0000107
NCBI chr15:39,955,689...40,488,737
Ensembl chr15:40,000,322...40,428,800
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Bcr
BCR activator of RhoGEF and GTPase
ISO
MGI:107771 (MGI:3622851|PMID:11921339)
RGD
PMID:11921339
MGI:3622851
NCBI chr20:14,421,250...14,546,406
Ensembl chr20:14,421,141...14,545,772
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Cdh23
cadherin-related 23
ISO
MGI:1856229|MGI:1856681|MGI:2665714 (MGI:3579755|PMID:15925194), (MGI:75953|PMID:7610888)
RGD
PMID:7610888 PMID:15925194
MGI:3579755 MGI:61210 MGI:75953
NCBI chr20:29,857,018...30,263,758
Ensembl chr20:29,857,637...29,990,111
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Celsr1
cadherin, EGF LAG seven-pass G-type receptor 1
ISO
MGI:1862019|MGI:2668337 (MGI:2667273|PMID:12842012)
RGD
PMID:12842012
MGI:2667273
NCBI chr 7:126,774,010...126,914,085
Ensembl chr 7:126,775,516...126,913,585
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Chd7
chromodomain helicase DNA binding protein 7
ISO
(PMID:15300250) MGI:3511552 (MGI:3056111|PMID:15353999)
RGD
PMID:15300250 PMID:15353999
MGI:3056111
NCBI chr 5:21,769,087...21,952,036
Ensembl chr 5:21,830,882...21,950,696
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Chrna10
cholinergic receptor nicotinic alpha 10 subunit
ISO
MGI:3774038 (MGI:3771935|PMID:18077337)
RGD
PMID:18077337
MGI:3771935
NCBI chr 1:167,206,722...167,212,199
Ensembl chr 1:167,206,722...167,210,919
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Chrna9
cholinergic receptor nicotinic alpha 9 subunit
ISO
MGI:2158742 (MGI:3771935|PMID:18077337)
RGD
PMID:18077337
MGI:3771935
NCBI chr14:43,883,450...43,890,171
Ensembl chr14:43,883,458...43,890,171
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Col11a1
collagen type XI alpha 1 chain
ISO
MGI:1856399 (MGI:49531|PMID:1952599)
RGD
PMID:1952599
MGI:49531
NCBI chr 2:216,863,423...217,056,523
Ensembl chr 2:216,863,428...217,056,523
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Col2a1
collagen type II alpha 1 chain
IEA ISO
GO_REF:0000107 MGI:1857275 (MGI:892501|PMID:9165353)
Ensembl RGD
PMID:9165353
GO_REF:0000107 MGI:892501
NCBI chr 7:139,454,945...139,484,403
Ensembl chr 7:139,455,242...139,483,997
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Dlx5
distal-less homeobox 5
IEA ISO
GO_REF:0000107 MGI:101927|MGI:2180474 (MGI:2384365|PMID:12142028), (MGI:3689133|PMID:16900517)
Ensembl RGD
PMID:12142028 PMID:16900517
GO_REF:0000107 MGI:2384365 MGI:3689133
NCBI chr 4:32,387,741...32,392,085
Ensembl chr 4:32,387,741...32,392,007
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Dlx6
distal-less homeobox 6
ISO
MGI:101926 (MGI:3689133|PMID:16900517)
RGD
PMID:16900517
MGI:3689133
NCBI chr 4:32,373,096...32,377,388
Ensembl chr 4:32,373,641...32,377,253
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Efna2
ephrin A2
TAS
RGD
PMID:10792438
RGD:1300471
NCBI chr 7:12,382,636...12,393,266
Ensembl chr 7:12,382,636...12,393,266
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Ephb2
Eph receptor B2
ISO
(MGI:1859095|PMID:10839360)
RGD
PMID:10839360
MGI:1859095
NCBI chr 5:155,024,478...155,143,539
Ensembl chr 5:155,022,493...155,204,456
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Eya1
EYA transcriptional coactivator and phosphatase 1
ISO
MGI:1857803|MGI:2150426|MGI:97486 (MGI:1344210|PMID:10471511), (MGI:3577160|PMID:15817220), (MGI:3702803|PMID:16916509)
RGD
PMID:10471511 PMID:15817220 PMID:16916509
MGI:1344210 MGI:3577160 MGI:3702803
NCBI chr 5:4,275,728...4,495,525
Ensembl chr 5:4,373,626...4,513,142
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Fgf10
fibroblast growth factor 10
ISO
MGI:1347464|MGI:1859647 (MGI:3654570|PMID:16691564), (MGI:3688470|PMID:11062007)
RGD
PMID:11062007 PMID:16691564
MGI:3654570 MGI:3688470
NCBI chr 2:51,673,480...51,747,533
Ensembl chr 2:51,672,722...51,750,369
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Fgf8
fibroblast growth factor 8
ISO
MGI:1345138 (MGI:3577817|PMID:15809037)
RGD
PMID:15809037
MGI:3577817
NCBI chr 1:265,492,949...265,498,965
Ensembl chr 1:265,493,124...265,498,831
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Fgf9
fibroblast growth factor 9
ISO
MGI:2135961 (MGI:3056034|PMID:15328018)
RGD
PMID:15328018
MGI:3056034
NCBI chr15:38,341,657...38,386,945
Ensembl chr15:38,341,089...38,387,316
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Fgfr1
Fibroblast growth factor receptor 1
ISO
MGI:2153351 (MGI:2386422|PMID:12194867)
RGD
PMID:12194867
MGI:2386422
NCBI chr16:71,265,390...71,319,046
Ensembl chr16:71,266,248...71,319,449
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Fgfr2
fibroblast growth factor receptor 2
ISO
MGI:2153811 (MGI:2153190|PMID:10934262)
RGD
PMID:10934262
MGI:2153190
NCBI chr 1:200,590,951...200,696,946
Ensembl chr 1:200,590,953...200,696,928
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Foxg1
forkhead box G1
ISO
MGI:1099809|MGI:2388671 (MGI:3654570|PMID:16691564)
RGD
PMID:16691564
MGI:3654570
NCBI chr 6:69,971,227...69,974,037
Ensembl chr 6:69,971,227...69,974,037
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Foxi1
forkhead box I1
ISO
MGI:2448634 (MGI:2652196|PMID:12642503)
RGD
PMID:12642503
MGI:2652196
NCBI chr10:19,160,566...19,164,505
Ensembl chr10:19,160,582...19,164,505
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Frzb
frizzled-related protein
ISO
MGI:98958 (MGI:3823145|PMID:18991062)
RGD
PMID:18991062
MGI:3823145
NCBI chr 3:67,635,604...67,668,772
Ensembl chr 3:67,635,607...67,668,772
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Fzd3
frizzled class receptor 3
ISO
MGI:108474 (MGI:3616416|PMID:16495441)
RGD
PMID:16495441
MGI:3616416
NCBI chr15:48,601,259...48,670,257
Ensembl chr15:48,601,266...48,670,257
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Fzd6
frizzled class receptor 6
ISO
MGI:108476 (MGI:3616416|PMID:16495441)
RGD
PMID:16495441
MGI:3616416
NCBI chr 7:77,898,329...77,931,034
Ensembl chr 7:77,899,322...77,931,029
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Gata2
GATA binding protein 2
ISO
MGI:4818492 (MGI:4821520|PMID:20652952)
RGD
PMID:20652952
MGI:4821520
NCBI chr 4:120,129,028...120,142,490
Ensembl chr 4:120,133,713...120,142,488
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Gata3
GATA binding protein 3
ISO
MGI:2153826|MGI:2181200 (MGI:1928163|PMID:11135239), (MGI:5013488|PMID:21553382)
RGD
PMID:11135239 PMID:21553382
MGI:1928163 MGI:5013488
NCBI chr17:72,419,752...72,452,043
Ensembl chr17:72,429,618...72,450,681
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Gbx2
gastrulation brain homeobox 2
ISO
MGI:1857634 (MGI:3578572|PMID:15829521), (MGI:3588904|PMID:15996652)
RGD
PMID:15829521 PMID:15996652
MGI:3578572 MGI:3588904
NCBI chr 9:97,063,265...97,065,855
Ensembl chr 9:97,063,728...97,065,817
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Gfi1
growth factor independent 1 transcriptional repressor
ISO
MGI:2449921 (MGI:2429425|PMID:12441305)
RGD
PMID:12441305
MGI:2429425
NCBI chr14:3,058,035...3,073,332
Ensembl chr14:3,058,993...3,068,371
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Hmx2
H6 family homeobox 2
ISO
MGI:107160|MGI:2154542 (MGI:2154463|PMID:11748138), (MGI:3055237|PMID:15363417)
RGD
PMID:11748138 PMID:15363417
MGI:2154463 MGI:3055237
NCBI chr 1:203,515,605...203,523,266
Ensembl chr 1:203,515,609...203,523,358
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Hmx3
H6 family homeobox 3
ISO
MGI:107159|MGI:1857577 (MGI:1197796|PMID:9435283), (MGI:3055237|PMID:15363417)
RGD
PMID:9435283 PMID:15363417
MGI:1197796 MGI:3055237
NCBI chr 1:203,509,731...203,511,695
Ensembl chr 1:203,509,731...203,511,695
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Hoxa1
homeobox A1
ISO
MGI:3056069 (MGI:3055618|PMID:15367676)
RGD
PMID:15367676
MGI:3055618
NCBI chr 4:82,124,358...82,127,182
Ensembl chr 4:82,125,406...82,127,066
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Insig1
insulin induced gene 1
ISO
MGI:1920249 (MGI:3689278|PMID:16955138)
RGD
PMID:16955138
MGI:3689278
NCBI chr 4:342,302...350,515
Ensembl chr 4:342,302...350,515
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Insig2
insulin induced gene 2
ISO
MGI:1916289 (MGI:3689278|PMID:16955138)
RGD
PMID:16955138
MGI:3689278
NCBI chr13:37,264,818...37,292,718
Ensembl chr13:37,266,312...37,287,458
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Itga8
integrin subunit alpha 8
ISO
MGI:2181699 (MGI:1355040|PMID:10742111)
RGD
PMID:10742111
MGI:1355040
NCBI chr17:79,321,893...79,676,927
Ensembl chr17:79,321,900...79,676,499
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Kcnq4
potassium voltage-gated channel subfamily Q member 4
IEA ISO
GO_REF:0000107 MGI:3618993 (MGI:3617033|PMID:16437162)
Ensembl RGD
PMID:16437162
GO_REF:0000107 MGI:3617033
NCBI chr 5:139,625,783...139,677,300
Ensembl chr 5:139,627,576...139,677,300
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Mafb
MAF bZIP transcription factor B
ISO
MGI:1856419 (MGI:3611672|PMID:16325169)
RGD
PMID:16325169
MGI:3611672
NCBI chr 3:156,338,993...156,340,913
Ensembl chr 3:156,339,004...156,340,913
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Myo15a
myosin XVA
ISO
MGI:1857036 (MGI:3041655|PMID:14724386), (MGI:3054106|PMID:11718241)
RGD
PMID:11718241 PMID:14724386
MGI:3041655 MGI:3054106
NCBI chr10:46,840,098...46,897,362
Ensembl chr10:46,840,113...46,896,054
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Myo6
myosin VI
ISO IBA
MGI:1856555 (MGI:77423|PMID:7493015) PMID:21873635
RGD
PMID:7493015 , PMID:21873635
MGI:77423 , RGD:13792537
NCBI chr 8:87,583,649...87,731,271
Ensembl chr 8:87,630,916...87,731,269
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Myo7a
myosin VIIA
ISO
MGI:1856716|MGI:1860092|MGI:2155422|MGI:3511858 (MGI:2156358|PMID:11753415), (MGI:3510503|PMID:15389316), (MGI:53596|PMID:5795329)
RGD
PMID:5795329 PMID:11753415 PMID:15389316
MGI:2156358 MGI:3510503 MGI:53596
NCBI chr 1:163,001,313...163,071,545
Ensembl chr 1:163,001,875...163,071,508
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Neurog1
neurogenin 1
ISO
UniProtKB:Q6ZNK6|UniProtKB:Q8TF63 (PMID:23419067) MGI:2183171 (MGI:3607238|PMID:16145671)
RGD
PMID:16145671 PMID:23419067
MGI:3607238
NCBI chr17:9,154,656...9,156,175
Ensembl chr17:9,154,656...9,156,175
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Nr4a3
nuclear receptor subfamily 4, group A, member 3
ISO
MGI:3037444 (MGI:2157256|PMID:11784868)
RGD
PMID:11784868
MGI:2157256
NCBI chr 5:63,781,801...63,822,890
Ensembl chr 5:63,781,801...63,821,637
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Ntn1
netrin 1
IEA ISO
GO_REF:0000107 MGI:2137018 (MGI:3718276|PMID:17616930)
Ensembl RGD
PMID:17616930
GO_REF:0000107 MGI:3718276
NCBI chr10:54,761,925...54,982,072
Ensembl chr10:54,761,871...54,967,585
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Otop1
otopetrin 1
ISO
MGI:1856638|MGI:2655558 (MGI:2654297|PMID:12651873)
RGD
PMID:12651873
MGI:2654297
NCBI chr14:77,236,278...77,263,729
Ensembl chr14:77,236,278...77,263,729
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Otx1
orthodenticle homeobox 1
IEA ISO
GO_REF:0000107 MGI:2136272|MGI:97451 (MGI:1335816|PMID:10225993)
Ensembl RGD
PMID:10225993
GO_REF:0000107 MGI:1335816
NCBI chr14:106,861,556...106,864,933
Ensembl chr14:106,861,676...106,864,892
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Otx2
orthodenticle homeobox 2
ISO
MGI:97450 (MGI:1335816|PMID:10225993)
RGD
PMID:10225993
MGI:1335816
NCBI chr15:25,500,037...25,511,619
Ensembl chr15:25,502,019...25,505,691
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Pax2
paired box 2
ISS ISO
GO_REF:0000024 MGI:109344|MGI:1857673|UniProtKB:Q00288 (MGI:3052393|PMID:15242798), (MGI:3702803|PMID:16916509), (MGI:4822275|PMID:20727173), (MGI:84247|PMID:8951055)
UniProt RGD
PMID:8951055 PMID:15242798 PMID:16916509 PMID:20727173
GO_REF:0000024 MGI:3052393 MGI:3702803 MGI:4822275 MGI:84247
NCBI chr 1:264,493,579...264,585,073
Ensembl chr 1:264,504,591...264,583,329
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Pax8
paired box 8
ISO
UniProtKB:P32114 (MGI:4822275|PMID:20727173)
RGD
PMID:20727173
MGI:4822275
NCBI chr 3:1,527,316...1,586,019
Ensembl chr 3:1,527,279...1,584,946
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Pou4f3
POU class 4 homeobox 3
ISO
MGI:1857425 (MGI:2451279|PMID:12585968)
RGD
PMID:12585968
MGI:2451279
NCBI chr18:36,713,869...36,716,461
Ensembl chr18:36,713,869...36,716,461
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Prrx1
paired related homeobox 1
ISO
MGI:98218 (MGI:1306737|PMID:9729491)
RGD
PMID:9729491
MGI:1306737
NCBI chr13:81,147,038...81,215,559
Ensembl chr13:81,147,348...81,214,546
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Prrx2
paired related homeobox 2
ISO
MGI:97712 (MGI:1306737|PMID:9729491)
RGD
PMID:9729491
MGI:1306737
NCBI chr 3:9,681,871...9,718,051
Ensembl chr 3:9,681,871...9,718,051
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Ptprq
protein tyrosine phosphatase, receptor type, Q
ISO
MGI:2679316 (MGI:2677560|PMID:14534255)
RGD
PMID:14534255
MGI:2677560
NCBI chr 7:49,763,657...50,034,932
Ensembl chr 7:49,763,657...50,034,932
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Ror2
receptor tyrosine kinase-like orphan receptor 2
ISO
MGI:2183225 (MGI:3814781|PMID:18606138)
RGD
PMID:18606138
MGI:3814781
NCBI chr17:11,953,552...12,134,386
Ensembl chr17:11,953,552...12,134,386
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Six1
SIX homeobox 1
ISO
MGI:106034 (MGI:3578604|PMID:15788460)
RGD
PMID:15788460
MGI:3578604
NCBI chr 6:95,929,060...95,934,296
Ensembl chr 6:95,929,060...95,934,296
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Six4
SIX homeobox 4
ISO
MGI:102780 (MGI:3578604|PMID:15788460)
RGD
PMID:15788460
MGI:3578604
NCBI chr 6:95,984,868...95,999,709
Ensembl chr 6:95,984,868...95,998,529
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Slitrk6
SLIT and NTRK-like family, member 6
ISO
MGI:4417931 (MGI:4413621|PMID:19936227)
RGD
PMID:19936227
MGI:4413621
NCBI chr15:95,507,632...95,514,259
Ensembl chr15:95,507,640...95,514,259
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Sobp
sine oculis binding protein homolog
ISO
MGI:1856614 (MGI:3664354|PMID:16962269)
RGD
PMID:16962269
MGI:3664354
NCBI chr20:47,731,713...47,910,466
Ensembl chr20:47,750,762...47,910,375
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Sox2
SRY-box transcription factor 2
ISO
MGI:2447995 (MGI:3578496|PMID:15846349)
RGD
PMID:15846349
MGI:3578496
NCBI chr 2:121,165,137...121,167,545
Ensembl chr 2:121,165,137...121,167,545
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Spry2
sprouty RTK signaling antagonist 2
ISO
MGI:3578633|MGI:99604 (MGI:3577817|PMID:15809037)
RGD
PMID:15809037
MGI:3577817
NCBI chr15:90,172,769...90,177,823
Ensembl chr15:90,172,975...90,175,802
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Tbx1
T-box transcription factor 1
ISS ISO
GO_REF:0000024 MGI:2179136|MGI:2179190|MGI:2179191|MGI:3046196|MGI:3619149 (MGI:2671642|PMID:12913075), (MGI:3039048|PMID:15084464), (MGI:3530686|PMID:15652707), (MGI:3629255|PMID:16600992)
UniProt RGD
PMID:12913075 PMID:15084464 PMID:15652707 PMID:16600992
GO_REF:0000024 MGI:2671642 MGI:3039048 MGI:3530686 MGI:3629255
NCBI chr11:86,552,022...86,561,647
Ensembl chr11:86,552,022...86,560,969
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Tfap2a
transcription factor AP-2 alpha
ISO ISS
(PMID:21204207) GO_REF:0000024
RGD UniProt
PMID:21204207
GO_REF:0000024
NCBI chr17:24,653,342...24,670,457
Ensembl chr17:24,654,902...24,670,457
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Tifab
TIFA inhibitor
ISO
UniProtKB:Q8TF63|UniProtKB:Q92886 (PMID:23419067)
RGD
PMID:23419067
NCBI chr17:9,234,948...9,239,266
Ensembl chr17:9,236,249...9,239,265
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Tmie
transmembrane inner ear
ISO IBA
MGI:1857053 (MGI:2183496|PMID:12140191) PMID:21873635
RGD
PMID:12140191 , PMID:21873635
MGI:2183496 , RGD:13792537
NCBI chr 8:119,142,116...119,157,071
Ensembl chr 8:119,142,434...119,157,071
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Ush1c
USH1 protein network component harmonin
ISO IBA
MGI:2651858|MGI:2651859 (MGI:2675093|PMID:14519688) PMID:21873635
RGD
PMID:14519688 , PMID:21873635
MGI:2675093 , RGD:13792537
NCBI chr 1:102,207,096...102,256,779
Ensembl chr 1:102,207,096...102,255,459
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Ush1g
USH1 protein network component sans
ISO
MGI:2450561 (MGI:2450572|PMID:12588793), (MGI:49706|PMID:1927362)
RGD
PMID:1927362 PMID:12588793
MGI:2450572 MGI:49706
NCBI chr10:103,866,566...103,873,416
Ensembl chr10:103,869,377...103,873,246
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Wnt1
Wnt family member 1
ISO
MGI:98956 (MGI:3582112|PMID:15961523)
RGD
PMID:15961523
MGI:3582112
NCBI chr 7:140,464,999...140,469,046
Ensembl chr 7:140,464,999...140,469,046
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Wnt3a
Wnt family member 3A
ISO
MGI:98953 (MGI:3582112|PMID:15961523)
RGD
PMID:15961523
MGI:3582112
NCBI chr10:45,598,898...45,643,151
Ensembl chr10:45,598,912...45,638,035
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Wnt5a
Wnt family member 5A
ISO
(MGI:3823145|PMID:18991062)
RGD
PMID:18991062
MGI:3823145
NCBI chr16:4,469,451...4,490,271
Ensembl chr16:4,469,468...4,489,860
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Mir96
microRNA 96
ISO
MGI:4354110 (MGI:4353582|PMID:19363478)
RGD
PMID:19363478
MGI:4353582
NCBI chr 4:57,463,366...57,463,471
Ensembl chr 4:57,463,366...57,463,471
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Rac1
Rac family small GTPase 1
ISO
MGI:2663662|MGI:2663669 (MGI:4430014|PMID:20016102)
RGD
PMID:20016102
MGI:4430014
NCBI chr12:13,090,316...13,111,841
Ensembl chr12:13,090,172...13,111,873
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Scrib
scribble planar cell polarity protein
ISO
MGI:2139764 (MGI:4439427|PMID:20215345)
RGD
PMID:20215345
MGI:4439427
NCBI chr 7:117,105,810...117,128,802
Ensembl chr 7:117,105,810...117,128,798
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Sec24b
SEC24 homolog B, COPII coat complex component
ISO
MGI:2145950|MGI:4440621 (MGI:4439427|PMID:20215345)
RGD
PMID:20215345
MGI:4439427
NCBI chr 2:230,286,886...230,356,887
Ensembl chr 2:230,287,296...230,356,919
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Slitrk6
SLIT and NTRK-like family, member 6
ISO
MGI:4417931 (MGI:4413621|PMID:19936227)
RGD
PMID:19936227
MGI:4413621
NCBI chr15:95,507,632...95,514,259
Ensembl chr15:95,507,640...95,514,259
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Wdpcp
WD repeat containing planar cell polarity effector
IEA ISO
GO_REF:0000107 MGI:5558098 (MGI:5544506|PMID:24302887)
Ensembl RGD
PMID:24302887
GO_REF:0000107 MGI:5544506
NCBI chr14:106,393,959...106,759,511
Ensembl chr14:106,393,959...106,759,505
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Atp2b2
ATPase plasma membrane Ca2+ transporting 2
ISO
MGI:1856799 (MGI:3709803|PMID:11875276)
RGD
PMID:11875276
MGI:3709803
NCBI chr 4:145,704,779...145,948,997
Ensembl chr 4:145,703,046...146,016,325
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Cdh23
cadherin-related 23
ISO IEA
MGI:1856228|MGI:1856681|MGI:1891428|MGI:2154548|MGI:2154549 (MGI:1929001|PMID:11138008), (MGI:1933915|PMID:11322776), (MGI:3526751|PMID:15537665), (MGI:3625226|PMID:12121736), (MGI:3686545|PMID:17050716), (MGI:5468200|PMID:23217710), (MGI:75953|PMID:7610888), (MGI:81497|PMID:8790740), (MGI:86134|PMID:9039475) GO_REF:0000107
RGD Ensembl
PMID:7610888 PMID:8790740 PMID:9039475 PMID:11138008 PMID:11322776 PMID:12121736 PMID:15537665 PMID:17050716 PMID:23217710
GO_REF:0000107 MGI:1929001 MGI:1933915 MGI:3526751 MGI:3625226 MGI:3686545 MGI:5468200 MGI:75953 MGI:81497 MGI:86134
NCBI chr20:29,857,018...30,263,758
Ensembl chr20:29,857,637...29,990,111
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Clic5
chloride intracellular channel 5
ISO IBA
MGI:3663254 (MGI:3663248|PMID:17021174) PMID:21873635
RGD
PMID:17021174 , PMID:21873635
MGI:3663248 , RGD:13792537
NCBI chr 9:19,121,676...19,372,673
Ensembl chr 9:19,121,677...19,372,673
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Clrn1
clarin 1
IEA ISO
GO_REF:0000107 MGI:3850171 (MGI:3849925|PMID:19414487), (MGI:4353469|PMID:19423712)
Ensembl RGD
PMID:19414487 PMID:19423712
GO_REF:0000107 MGI:3849925 MGI:4353469
NCBI chr 2:149,049,925...149,088,787
Ensembl chr 2:149,049,925...149,088,787
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Grxcr2
glutaredoxin and cysteine rich domain containing 2
ISO
MGI:2139535|MGI:6281113|MGI:6281114 (MGI:6278501|PMID:30380417)
RGD
PMID:30380417
MGI:6278501
NCBI chr18:36,308,925...36,334,643
Ensembl chr18:36,308,925...36,322,320
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Lhfpl5
LHFPL tetraspan subfamily member 5
ISO
MGI:3055797|MGI:3718054 (MGI:3578102|PMID:15905332), (MGI:3759710|PMID:17876667), (MGI:5468200|PMID:23217710)
RGD
PMID:15905332 PMID:17876667 PMID:23217710
MGI:3578102 MGI:3759710 MGI:5468200
NCBI chr20:5,815,837...5,826,137
Ensembl chr20:5,815,837...5,826,137
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Myo3a
myosin IIIA
ISO
MGI:2448580 (MGI:5766107|PMID:26754646)
RGD
PMID:26754646
MGI:5766107
NCBI chr17:88,952,635...89,167,538
Ensembl chr17:88,963,981...89,167,018
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Myo3b
myosin IIIB
ISO
MGI:2183924 (MGI:5766107|PMID:26754646)
RGD
PMID:26754646
MGI:5766107
NCBI chr 3:56,355,433...56,717,740
Ensembl chr 3:56,355,431...56,584,547
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Myo7a
myosin VIIA
ISO
MGI:1860092|MGI:2155422 (MGI:2156358|PMID:11753415), (MGI:3625226|PMID:12121736), (MGI:3686545|PMID:17050716)
RGD
PMID:11753415 PMID:12121736 PMID:17050716
MGI:2156358 MGI:3625226 MGI:3686545
NCBI chr 1:163,001,313...163,071,545
Ensembl chr 1:163,001,875...163,071,508
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Pcdh15
protocadherin related 15
ISO
MGI:1855958|MGI:1856394|MGI:1856396|MGI:1890219|MGI:2151877|MGI:3505691 (MGI:1928787|PMID:10978835), (MGI:3526751|PMID:15537665), (MGI:3619110|PMID:11124469), (MGI:3654702|PMID:16887306), (MGI:5468200|PMID:23217710)
RGD
PMID:10978835 PMID:11124469 PMID:15537665 PMID:16887306 PMID:23217710
MGI:1928787 MGI:3526751 MGI:3619110 MGI:3654702 MGI:5468200
NCBI chr20:14,952,213...15,334,745
Ensembl chr20:14,952,213...15,334,745
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Pdzd7
PDZ domain containing 7
ISO IBA
MGI:4433578 (MGI:5565635|PMID:24334608) PMID:21873635
RGD
PMID:24334608 , PMID:21873635
MGI:5565635 , RGD:13792537
NCBI chr 1:264,776,393...264,796,206
Ensembl chr 1:264,776,398...264,794,938
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Pls1
plastin 1
IEA ISO
GO_REF:0000107 (MGI:5608770|PMID:25124451)
Ensembl RGD
PMID:25124451
GO_REF:0000107 MGI:5608770
NCBI chr 8:103,557,361...103,659,625
Ensembl chr 8:103,557,364...103,608,913
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Rest
RE1-silencing transcription factor
ISS ISO
GO_REF:0000024 (MGI:6193260|PMID:29961578)
UniProt RGD
PMID:29961578
GO_REF:0000024 MGI:6193260
NCBI chr14:33,131,985...33,152,019
Ensembl chr14:33,134,511...33,164,141
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Ripor2
RHO family interacting cell polarization regulator 2
ISO
(MGI:5789047|PMID:27269051)
RGD
PMID:27269051
MGI:5789047
NCBI chr17:42,324,594...42,549,907
Ensembl chr17:42,324,594...42,422,053
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Scrib
scribble planar cell polarity protein
ISO
MGI:2139764 (MGI:4439427|PMID:20215345)
RGD
PMID:20215345
MGI:4439427
NCBI chr 7:117,105,810...117,128,802
Ensembl chr 7:117,105,810...117,128,798
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Sec24b
SEC24 homolog B, COPII coat complex component
ISO
MGI:2145950|MGI:4440621 (MGI:4439427|PMID:20215345)
RGD
PMID:20215345
MGI:4439427
NCBI chr 2:230,286,886...230,356,887
Ensembl chr 2:230,287,296...230,356,919
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Slc9a3r1
SLC9A3 regulator 1
ISO
MGI:3526430 (MGI:5578076|PMID:24920589)
RGD
PMID:24920589
MGI:5578076
NCBI chr10:103,713,045...103,730,145
Ensembl chr10:103,713,045...103,730,145
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Sod1
superoxide dismutase 1
ISS ISO
GO_REF:0000024 MGI:1857872 (MGI:1344578|PMID:10466888), (MGI:3700629|PMID:10464373)
UniProt RGD
PMID:10464373 PMID:10466888
GO_REF:0000024 MGI:1344578 MGI:3700629
NCBI chr11:30,363,282...30,368,858
Ensembl chr11:30,363,280...30,368,862
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Strc
stereocilin
ISO
MGI:3818633 (MGI:3818235|PMID:18849963), (MGI:5430850|PMID:21165971)
RGD
PMID:18849963 PMID:21165971
MGI:3818235 MGI:5430850
NCBI chr 3:113,324,403...113,343,513
Ensembl chr 3:113,324,698...113,342,675
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Tprn
taperin
ISO
MGI:2685697 (MGI:6278501|PMID:30380417)
RGD
PMID:30380417
MGI:6278501
NCBI chr 3:2,480,232...2,487,710
Ensembl chr 3:2,480,232...2,487,710
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Triobp
TRIO and F-actin binding protein
ISO
MGI:4881773 (MGI:4881391|PMID:20510926)
RGD
PMID:20510926
MGI:4881391
NCBI chr 7:120,173,892...120,237,145
Ensembl chr 7:120,176,530...120,230,420
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Whrn
whirlin
IEA IBA ISO
GO_REF:0000107 PMID:21873635 MGI:4432119 (MGI:5796227|PMID:27117407)
Ensembl RGD
PMID:27117407 , PMID:21873635
GO_REF:0000107 MGI:5796227 , RGD:13792537
NCBI chr 5:79,235,541...79,317,206
Ensembl chr 5:79,234,950...79,317,206
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Cthrc1
collagen triple helix repeat containing 1
ISO
MGI:1915838 (MGI:3814781|PMID:18606138)
RGD
PMID:18606138
MGI:3814781
NCBI chr 7:77,966,722...77,977,004
Ensembl chr 7:77,966,722...77,977,004
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Dvl1
dishevelled segment polarity protein 1
ISO
MGI:106613 (MGI:3589836|PMID:16116426)
RGD
PMID:16116426
MGI:3589836
NCBI chr 5:173,295,948...173,308,014
Ensembl chr 5:173,296,270...173,307,945
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Dvl2
dishevelled segment polarity protein 2
ISO
MGI:108100|MGI:94941 (MGI:3589836|PMID:16116426), (MGI:3821448|PMID:19008950)
RGD
PMID:16116426 PMID:19008950
MGI:3589836 MGI:3821448
NCBI chr10:56,609,810...56,619,269
Ensembl chr10:56,610,051...56,619,269
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Dvl3
dishevelled segment polarity protein 3
ISO
MGI:106613|MGI:2135272 (MGI:3821448|PMID:19008950)
RGD
PMID:19008950
MGI:3821448
NCBI chr11:84,051,177...84,068,479
Ensembl chr11:84,051,078...84,068,302
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Eya1
EYA transcriptional coactivator and phosphatase 1
ISO
MGI:1857803 (MGI:1335261|PMID:10072433)
RGD
PMID:10072433
MGI:1335261
NCBI chr 5:4,275,728...4,495,525
Ensembl chr 5:4,373,626...4,513,142
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Frzb
frizzled-related protein
ISO
MGI:98958 (MGI:3714704|PMID:17433286)
RGD
PMID:17433286
MGI:3714704
NCBI chr 3:67,635,604...67,668,772
Ensembl chr 3:67,635,607...67,668,772
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Fzd2
frizzled class receptor 2
IEA ISO
GO_REF:0000107 MGI:2135272 (MGI:4837757|PMID:20940229)
Ensembl RGD
PMID:20940229
GO_REF:0000107 MGI:4837757
NCBI chr10:90,550,147...90,552,057
Ensembl chr10:90,550,147...90,552,057
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Gli2
GLI family zinc finger 2
ISO
MGI:1857509 (MGI:3709667|PMID:17395647)
RGD
PMID:17395647
MGI:3709667
NCBI chr13:34,829,021...35,049,172
Ensembl chr13:34,829,139...35,048,444
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Grhl3
grainyhead-like transcription factor 3
ISO
MGI:2135272 (MGI:4819429|PMID:20643356)
RGD
PMID:20643356
MGI:4819429
NCBI chr 5:153,893,039...153,925,045
Ensembl chr 5:153,893,039...153,924,896
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Hoxa1
homeobox A1
ISO
(PMID:16155570)
RGD
PMID:16155570
NCBI chr 4:82,124,358...82,127,182
Ensembl chr 4:82,125,406...82,127,066
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Hpn
hepsin
ISS ISO
GO_REF:0000024 (MGI:5306554|PMID:20683358)
UniProt RGD
PMID:20683358
GO_REF:0000024 MGI:5306554
NCBI chr 1:89,534,112...89,549,575
Ensembl chr 1:89,534,106...89,543,967
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Myo3a
myosin IIIA
ISO
(MGI:5766107|PMID:26754646)
RGD
PMID:26754646
MGI:5766107
NCBI chr17:88,952,635...89,167,538
Ensembl chr17:88,963,981...89,167,018
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Myo3b
myosin IIIB
ISO
(MGI:5766107|PMID:26754646)
RGD
PMID:26754646
MGI:5766107
NCBI chr 3:56,355,433...56,717,740
Ensembl chr 3:56,355,431...56,584,547
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Neurog1
neurogenin 1
ISO
UniProtKB:Q6ZNK6|UniProtKB:Q8TF63 (PMID:23419067)
RGD
PMID:23419067
NCBI chr17:9,154,656...9,156,175
Ensembl chr17:9,154,656...9,156,175
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Pax2
paired box 2
ISS ISO
GO_REF:0000024 MGI:1857673|UniProtKB:Q00288 (MGI:3702803|PMID:16916509), (MGI:4822275|PMID:20727173), (MGI:84247|PMID:8951055)
UniProt RGD
PMID:8951055 PMID:16916509 PMID:20727173
GO_REF:0000024 MGI:3702803 MGI:4822275 MGI:84247
NCBI chr 1:264,493,579...264,585,073
Ensembl chr 1:264,504,591...264,583,329
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Pou3f4
POU class 3 homeobox 4
ISS ISO
GO_REF:0000024 UniProtKB:P70323 (MGI:5284768|PMID:18231833)
UniProt RGD
PMID:18231833
GO_REF:0000024 MGI:5284768
NCBI chr X:82,143,789...82,145,066
Ensembl chr X:82,143,789...82,145,066
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Ptk7
protein tyrosine kinase 7
ISO
MGI:3640803 (MGI:4830023|PMID:20704721)
RGD
PMID:20704721
MGI:4830023
NCBI chr 9:16,662,588...16,729,888
Ensembl chr 9:16,702,460...16,729,030
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Rac1
Rac family small GTPase 1
ISO
MGI:2663662|MGI:2663669 (MGI:4430014|PMID:20016102)
RGD
PMID:20016102
MGI:4430014
NCBI chr12:13,090,316...13,111,841
Ensembl chr12:13,090,172...13,111,873
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Six1
SIX homeobox 1
ISO
MGI:2655195 (MGI:2671031|PMID:12874121)
RGD
PMID:12874121
MGI:2671031
NCBI chr 6:95,929,060...95,934,296
Ensembl chr 6:95,929,060...95,934,296
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Sox9
SRY-box transcription factor 9
ISS ISO
GO_REF:0000024 MGI:2385468|MGI:3841145 (MGI:4454502|PMID:20346939)
UniProt RGD
PMID:20346939
GO_REF:0000024 MGI:4454502
NCBI chr10:101,288,528...101,294,030
Ensembl chr10:101,288,489...101,293,379
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Tbx1
T-box transcription factor 1
ISS ISO
GO_REF:0000024 MGI:2179136|UniProtKB:P62515 (MGI:3765363|PMID:17825816), (MGI:5284768|PMID:18231833)
UniProt RGD
PMID:17825816 PMID:18231833
GO_REF:0000024 MGI:3765363 MGI:5284768
NCBI chr11:86,552,022...86,561,647
Ensembl chr11:86,552,022...86,560,969
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Tbx18
T-box transcription factor 18
ISO
MGI:3044915 (MGI:3788971|PMID:18353863)
RGD
PMID:18353863
MGI:3788971
NCBI chr 8:95,359,354...95,387,363
Ensembl chr 8:95,359,354...95,387,363
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Tifab
TIFA inhibitor
ISO
UniProtKB:Q8TF63|UniProtKB:Q92886 (PMID:23419067)
RGD
PMID:23419067
NCBI chr17:9,234,948...9,239,266
Ensembl chr17:9,236,249...9,239,265
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Tshr
thyroid stimulating hormone receptor
IEA
GO_REF:0000107
Ensembl
GO_REF:0000107
NCBI chr 6:115,170,290...115,306,871
Ensembl chr 6:115,170,865...115,306,871
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Tshr-ps1
thyroid stimulating hormone receptor, pseudogene 1
ISO
(MGI:3652455|PMID:10575115)
RGD
PMID:10575115
MGI:3652455
NCBI chr 4:93,447,412...93,448,194
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Vangl2
VANGL planar cell polarity protein 2
ISO
MGI:108100|MGI:1857642|MGI:1888513|MGI:2655333|MGI:98958 (MGI:3589836|PMID:16116426), (MGI:3714704|PMID:17433286), (MGI:3814781|PMID:18606138), (MGI:3821448|PMID:19008950), (MGI:4819429|PMID:20643356), (MGI:4837757|PMID:20940229)
RGD
PMID:16116426 PMID:17433286 PMID:18606138 PMID:19008950 PMID:20643356 PMID:20940229
MGI:3589836 MGI:3714704 MGI:3814781 MGI:3821448 MGI:4819429 MGI:4837757
NCBI chr13:90,379,203...90,405,627
Ensembl chr13:90,380,632...90,405,591
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Wnt5a
Wnt family member 5A
IEA ISO
GO_REF:0000107 MGI:1857617|MGI:2135272 (MGI:3714704|PMID:17433286)
Ensembl RGD
PMID:17433286
GO_REF:0000107 MGI:3714704
NCBI chr16:4,469,451...4,490,271
Ensembl chr16:4,469,468...4,489,860
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Zeb1
zinc finger E-box binding homeobox 1
IEA ISO
GO_REF:0000107 MGI:1861230 (MGI:5294688|PMID:21980308)
Ensembl RGD
PMID:21980308
GO_REF:0000107 MGI:5294688
NCBI chr17:54,656,627...54,714,920
Ensembl chr17:54,658,463...54,714,914
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Fgf10
fibroblast growth factor 10
ISO
MGI:95517 (MGI:2683889|PMID:14623822)
RGD
PMID:14623822
MGI:2683889
NCBI chr 2:51,673,480...51,747,533
Ensembl chr 2:51,672,722...51,750,369
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Fgf3
fibroblast growth factor 3
ISO
MGI:1099809|MGI:96604 (MGI:3720541|PMID:17601531)
RGD
PMID:17601531
MGI:3720541
NCBI chr 1:218,003,018...218,006,942
Ensembl chr 1:218,003,018...218,006,942
G
Fgf8
fibroblast growth factor 8
ISO
MGI:95117 (MGI:3720541|PMID:17601531)
RGD
PMID:17601531
MGI:3720541
NCBI chr 1:265,492,949...265,498,965
Ensembl chr 1:265,493,124...265,498,831
G
Fgfr2
fibroblast growth factor receptor 2
ISO
MGI:2153790 (MGI:1197797|PMID:9435295)
RGD
PMID:9435295
MGI:1197797
NCBI chr 1:200,590,951...200,696,946
Ensembl chr 1:200,590,953...200,696,928
G
Hesx1
HESX homeobox 1
ISO
MGI:1931124 (MGI:1206234|PMID:9620767)
RGD
PMID:9620767
MGI:1206234
NCBI chr16:2,616,538...2,636,708
Ensembl chr16:2,634,603...2,636,708
G
Sox9
SRY-box transcription factor 9
ISS ISO
GO_REF:0000024 MGI:1932522|MGI:2385468 (MGI:3795349|PMID:18377888)
UniProt RGD
PMID:18377888
GO_REF:0000024 MGI:3795349
NCBI chr10:101,288,528...101,294,030
Ensembl chr10:101,288,489...101,293,379
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Tcap
titin-cap
ISO
(PMID:9817758)
RGD
PMID:9817758
NCBI chr10:86,337,705...86,338,414
Ensembl chr10:86,337,728...86,338,411
G
Eya1
EYA transcriptional coactivator and phosphatase 1
ISO
MGI:2150426 (MGI:3702803|PMID:16916509)
RGD
PMID:16916509
MGI:3702803
NCBI chr 5:4,275,728...4,495,525
Ensembl chr 5:4,373,626...4,513,142
G
Tbx1
T-box transcription factor 1
ISO
MGI:3046793 (MGI:3703494|PMID:17074316)
RGD
PMID:17074316
MGI:3703494
NCBI chr11:86,552,022...86,561,647
Ensembl chr11:86,552,022...86,560,969
G
Slc44a4
solute carrier family 44, member 4
ISS
GO_REF:0000024
UniProt
GO_REF:0000024
NCBI chr20:4,593,389...4,609,641
Ensembl chr20:4,593,389...4,609,631
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Bloc1s5
biogenesis of lysosomal organelles complex 1 subunit 5
ISO
MGI:1856106 (MGI:53623|PMID:5367369)
RGD
PMID:5367369
MGI:53623
NCBI chr17:26,808,193...26,833,257
Ensembl chr17:26,808,330...26,833,247
G
Lrig1
leucine-rich repeats and immunoglobulin-like domains 1
ISO
MGI:2443955 (MGI:5519140|PMID:24086156)
RGD
PMID:24086156
MGI:5519140
NCBI chr 4:126,615,998...126,717,434
Ensembl chr 4:126,617,244...126,644,895
G
Lrig3
leucine-rich repeats and immunoglobulin-like domains 3
ISO
MGI:107935 (MGI:5519140|PMID:24086156)
RGD
PMID:24086156
MGI:5519140
NCBI chr 7:69,213,098...69,263,251
Ensembl chr 7:69,213,147...69,263,142
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Ttc39c
tetratricopeptide repeat domain 39C
IBA
PMID:21873635
GO_Central
PMID:21873635
RGD:13792537
NCBI chr18:3,958,424...4,080,028
Ensembl chr18:3,958,432...4,080,025
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Stox1
storkhead box 1
ISO
(MGI:5635320|PMID:25677106)
RGD
PMID:25677106
MGI:5635320
NCBI chr20:32,276,857...32,353,677
Ensembl chr20:32,276,658...32,353,677
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Hoxa1
homeobox A1
ISO
(PMID:16155570)
RGD
PMID:16155570
NCBI chr 4:82,124,358...82,127,182
Ensembl chr 4:82,125,406...82,127,066
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Fgf10
fibroblast growth factor 10
ISO
MGI:1859647 (MGI:3575490|PMID:15765517)
RGD
PMID:15765517
MGI:3575490
NCBI chr 2:51,673,480...51,747,533
Ensembl chr 2:51,672,722...51,750,369
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Chd7
chromodomain helicase DNA binding protein 7
ISO
MGI:98493 (MGI:4397600|PMID:19855134)
RGD
PMID:19855134
MGI:4397600
NCBI chr 5:21,769,087...21,952,036
Ensembl chr 5:21,830,882...21,950,696
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Eya1
EYA transcriptional coactivator and phosphatase 1
ISO
MGI:1857803 (MGI:1335261|PMID:10072433)
RGD
PMID:10072433
MGI:1335261
NCBI chr 5:4,275,728...4,495,525
Ensembl chr 5:4,373,626...4,513,142
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Fgf10
fibroblast growth factor 10
ISO
MGI:95517 (MGI:3720541|PMID:17601531)
RGD
PMID:17601531
MGI:3720541
NCBI chr 2:51,673,480...51,747,533
Ensembl chr 2:51,672,722...51,750,369
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Fgf3
fibroblast growth factor 3
ISO
MGI:1099809 (MGI:3720541|PMID:17601531)
RGD
PMID:17601531
MGI:3720541
NCBI chr 1:218,003,018...218,006,942
Ensembl chr 1:218,003,018...218,006,942
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Nr4a3
nuclear receptor subfamily 4, group A, member 3
ISO
MGI:3037444 (MGI:2157256|PMID:11784868)
RGD
PMID:11784868
MGI:2157256
NCBI chr 5:63,781,801...63,822,890
Ensembl chr 5:63,781,801...63,821,637
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Tbx1
T-box transcription factor 1
ISS ISO
GO_REF:0000024 MGI:2444748 (MGI:4397600|PMID:19855134)
UniProt RGD
PMID:19855134
GO_REF:0000024 MGI:4397600
NCBI chr11:86,552,022...86,561,647
Ensembl chr11:86,552,022...86,560,969
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Zeb1
zinc finger E-box binding homeobox 1
IEA ISO
GO_REF:0000107 MGI:1861230 (MGI:5294688|PMID:21980308)
Ensembl RGD
PMID:21980308
GO_REF:0000107 MGI:5294688
NCBI chr17:54,656,627...54,714,920
Ensembl chr17:54,658,463...54,714,914
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Ptprq
protein tyrosine phosphatase, receptor type, Q
IEA ISO
GO_REF:0000107 MGI:2679316 (MGI:5315778|PMID:22357859)
Ensembl RGD
PMID:22357859
GO_REF:0000107 MGI:5315778
NCBI chr 7:49,763,657...50,034,932
Ensembl chr 7:49,763,657...50,034,932
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Pls1
plastin 1
IEA ISO
GO_REF:0000107 (MGI:5608770|PMID:25124451)
Ensembl RGD
PMID:25124451
GO_REF:0000107 MGI:5608770
NCBI chr 8:103,557,361...103,659,625
Ensembl chr 8:103,557,364...103,608,913
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