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ONTOLOGY REPORT - ANNOTATIONS


Term:inner ear morphogenesis
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Accession:GO:0042472 term browser browse the term
Definition:The process in which the anatomical structures of the inner ear are generated and organized. The inner ear is the structure in vertebrates that contains the organs of balance and hearing. It consists of soft hollow sensory structures (the membranous labyrinth) containing fluid (endolymph) surrounded by fluid (perilymph) and encased in a bony cavity (the bony labyrinth). It consists of two chambers, the sacculus and utriculus, from which arise the cochlea and semicircular canals respectively.



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inner ear morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Abr ABR activator of RhoGEF and GTPase acts_upstream_of_or_within ISO MGI:88141 (MGI:3622851|PMID:11921339) RGD PMID:11921339 MGI:3622851 NCBI chr10:61,262,516...61,461,331
Ensembl chr10:61,262,516...61,461,505
JBrowse link
G Aldh1a3 aldehyde dehydrogenase 1 family, member A3 involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:3043947 (MGI:5488831|PMID:23536097)
Ensembl
RGD
PMID:23536097 GO_REF:0000107 MGI:5488831 NCBI chr 1:119,982,272...120,017,416
Ensembl chr 1:119,982,277...120,017,436
JBrowse link
G Atoh1 atonal bHLH transcription factor 1 acts_upstream_of_or_within ISO MGI:2155983|MGI:2155984 (MGI:3525036|PMID:15543141), (MGI:3607238|PMID:16145671) RGD PMID:15543141 PMID:16145671 MGI:3525036 MGI:3607238 NCBI chr 4:93,912,068...93,914,163
Ensembl chr 4:93,912,068...93,914,154
JBrowse link
G Atp2b2 ATPase plasma membrane Ca2+ transporting 2 acts_upstream_of_or_within ISO MGI:1857876 (MGI:1275896|PMID:9668038) RGD PMID:9668038 MGI:1275896 NCBI chr 4:146,896,332...147,140,665
Ensembl chr 4:146,896,332...147,140,665
JBrowse link
G Atp6v1b1 ATPase H+ transporting V1 subunit B1 involved_in
NOT|involved_in
ISS
ISO
GO_REF:0000024
(MGI:2669353|PMID:12782355)
(PMID:19639346)
UniProt
RGD
PMID:12782355 PMID:19639346 GO_REF:0000024 MGI:2669353 NCBI chr 4:116,223,799...116,242,475
Ensembl chr 4:116,223,799...116,242,475
JBrowse link
G Atp8a2 ATPase phospholipid transporting 8A2 involved_in IEA GO_REF:0000107 Ensembl GO_REF:0000107 NCBI chr15:33,817,309...34,350,193
Ensembl chr15:33,819,755...34,350,223
JBrowse link
G Bcr BCR activator of RhoGEF and GTPase acts_upstream_of_or_within ISO MGI:107771 (MGI:3622851|PMID:11921339) RGD PMID:11921339 MGI:3622851 NCBI chr20:13,471,679...13,596,497
Ensembl chr20:13,471,668...13,597,016
JBrowse link
G Cdh23 cadherin-related 23 acts_upstream_of_or_within ISO MGI:1856229|MGI:1856681|MGI:2665714 (MGI:3579755|PMID:15925194), (MGI:75953|PMID:7610888) RGD PMID:7610888 PMID:15925194 MGI:3579755 MGI:61210 MGI:75953 NCBI chr20:28,240,643...28,622,490
Ensembl chr20:28,240,645...28,622,419
JBrowse link
G Celsr1 cadherin, EGF LAG seven-pass G-type receptor 1 acts_upstream_of_or_within ISO MGI:1862019|MGI:2668337 (MGI:2667273|PMID:12842012) RGD PMID:12842012 MGI:2667273 NCBI chr 7:116,987,616...117,125,035
Ensembl chr 7:116,987,605...117,125,164
JBrowse link
G Chd7 chromodomain helicase DNA binding protein 7 involved_in
acts_upstream_of_or_within
ISO (PMID:15300250)
MGI:3511552 (MGI:3056111|PMID:15353999)
RGD PMID:15300250 PMID:15353999 MGI:3056111 NCBI chr 5:21,812,007...21,995,358
Ensembl chr 5:21,812,070...21,995,358
JBrowse link
G Chrna10 cholinergic receptor nicotinic alpha 10 subunit acts_upstream_of_or_within ISO MGI:3774038 (MGI:3771935|PMID:18077337) RGD PMID:18077337 MGI:3771935 NCBI chr 1:156,487,279...156,494,277
Ensembl chr 1:156,487,279...156,491,476
JBrowse link
G Chrna9 cholinergic receptor nicotinic alpha 9 subunit acts_upstream_of_or_within ISO MGI:2158742 (MGI:3771935|PMID:18077337) RGD PMID:18077337 MGI:3771935 NCBI chr14:42,235,218...42,241,939
Ensembl chr14:42,235,226...42,242,192
JBrowse link
G Col11a1 collagen type XI alpha 1 chain acts_upstream_of_or_within ISO MGI:1856399 (MGI:49531|PMID:1952599) RGD PMID:1952599 MGI:49531 NCBI chr 2:201,820,715...202,013,853
Ensembl chr 2:201,820,715...202,013,853
JBrowse link
G Col2a1 collagen type II alpha 1 chain involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:1857275 (MGI:892501|PMID:9165353)
Ensembl
RGD
PMID:9165353 GO_REF:0000107 MGI:892501 NCBI chr 7:129,098,489...129,127,620
Ensembl chr 7:129,098,786...129,127,546
JBrowse link
G Dlx5 distal-less homeobox 5 involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:101927|MGI:2180474 (MGI:2384365|PMID:12142028), (MGI:3689133|PMID:16900517)
Ensembl
RGD
PMID:12142028 PMID:16900517 GO_REF:0000107 MGI:2384365 MGI:3689133 NCBI chr 4:34,999,139...35,003,504
Ensembl chr 4:34,999,139...35,003,407
JBrowse link
G Dlx6 distal-less homeobox 6 acts_upstream_of_or_within ISO MGI:101926 (MGI:3689133|PMID:16900517) RGD PMID:16900517 MGI:3689133 NCBI chr 4:34,984,264...34,989,926 JBrowse link
G Efna2 ephrin A2 TAS RGD PMID:10792438 RGD:1300471 NCBI chr 7:9,515,635...9,528,071
Ensembl chr 7:9,516,429...9,527,061
JBrowse link
G Ephb2 Eph receptor B2 involved_in ISO (MGI:1859095|PMID:10839360) RGD PMID:10839360 MGI:1859095 NCBI chr 5:148,889,574...149,077,027
Ensembl chr 5:148,897,246...149,077,059
JBrowse link
G Eya1 EYA transcriptional coactivator and phosphatase 1 acts_upstream_of_or_within ISO MGI:1857803|MGI:2150426|MGI:97486 (MGI:1344210|PMID:10471511), (MGI:3577160|PMID:15817220), (MGI:3702803|PMID:16916509) RGD PMID:10471511 PMID:15817220 PMID:16916509 MGI:1344210 MGI:3577160 MGI:3702803 NCBI chr 5:4,863,501...5,101,483
Ensembl chr 5:4,955,543...5,101,483
JBrowse link
G Fgf10 fibroblast growth factor 10 acts_upstream_of_or_within ISO MGI:1347464|MGI:1859647 (MGI:3654570|PMID:16691564), (MGI:3688470|PMID:11062007) RGD PMID:11062007 PMID:16691564 MGI:3654570 MGI:3688470 NCBI chr 2:50,801,897...50,875,428
Ensembl chr 2:50,800,992...50,876,866
JBrowse link
G Fgf8 fibroblast growth factor 8 acts_upstream_of_or_within ISO MGI:1345138 (MGI:3577817|PMID:15809037) RGD PMID:15809037 MGI:3577817 NCBI chr 1:244,584,477...244,590,359
Ensembl chr 1:244,584,652...244,590,359
JBrowse link
G Fgf9 fibroblast growth factor 9 acts_upstream_of_or_within ISO MGI:2135961 (MGI:3056034|PMID:15328018) RGD PMID:15328018 MGI:3056034 NCBI chr15:32,208,993...32,254,952
Ensembl chr15:32,210,074...32,253,309
JBrowse link
G Fgfr1 Fibroblast growth factor receptor 1 acts_upstream_of_or_within ISO MGI:2153351 (MGI:2386422|PMID:12194867) RGD PMID:12194867 MGI:2386422 NCBI chr16:66,492,445...66,546,731
Ensembl chr16:66,494,042...66,547,350
JBrowse link
G Fgfr2 fibroblast growth factor receptor 2 acts_upstream_of_or_within ISO MGI:2153811 (MGI:2153190|PMID:10934262) RGD PMID:10934262 MGI:2153190 NCBI chr 1:184,745,418...184,850,655
Ensembl chr 1:184,745,420...184,850,626
JBrowse link
G Foxg1 forkhead box G1 acts_upstream_of_or_within ISO MGI:1099809|MGI:2388671 (MGI:3654570|PMID:16691564) RGD PMID:16691564 MGI:3654570 NCBI chr 6:66,674,797...66,677,611
Ensembl chr 6:66,666,587...66,678,607
JBrowse link
G Foxi1 forkhead box I1 acts_upstream_of_or_within ISO MGI:2448634 (MGI:2652196|PMID:12642503) RGD PMID:12642503 MGI:2652196 NCBI chr10:18,806,292...18,810,231
Ensembl chr10:18,806,308...18,810,231
JBrowse link
G Frzb frizzled-related protein acts_upstream_of_or_within ISO MGI:98958 (MGI:3823145|PMID:18991062) RGD PMID:18991062 MGI:3823145 NCBI chr 3:65,332,274...65,365,208
Ensembl chr 3:65,332,277...65,365,208
JBrowse link
G Fzd3 frizzled class receptor 3 acts_upstream_of_or_within ISO MGI:108474 (MGI:3616416|PMID:16495441) RGD PMID:16495441 MGI:3616416 NCBI chr15:39,421,366...39,488,369
Ensembl chr15:39,421,355...39,488,369
JBrowse link
G Fzd6 frizzled class receptor 6 acts_upstream_of_or_within ISO MGI:108476 (MGI:3616416|PMID:16495441) RGD PMID:16495441 MGI:3616416 NCBI chr 7:70,055,012...70,086,781
Ensembl chr 7:70,055,068...70,086,776
JBrowse link
G Gata2 GATA binding protein 2 acts_upstream_of_or_within ISO MGI:4818492 (MGI:4821520|PMID:20652952) RGD PMID:20652952 MGI:4821520 NCBI chr 4:120,654,205...120,667,763
Ensembl chr 4:120,658,986...120,667,761
JBrowse link
G Gata3 GATA binding protein 3 acts_upstream_of_or_within ISO MGI:2153826|MGI:2181200 (MGI:1928163|PMID:11135239), (MGI:5013488|PMID:21553382) RGD PMID:11135239 PMID:21553382 MGI:1928163 MGI:5013488 NCBI chr17:68,643,760...68,666,000
Ensembl chr17:68,643,873...68,665,391
JBrowse link
G Gbx2 gastrulation brain homeobox 2 acts_upstream_of_or_within ISO MGI:1857634 (MGI:3578572|PMID:15829521), (MGI:3588904|PMID:15996652) RGD PMID:15829521 PMID:15996652 MGI:3578572 MGI:3588904 NCBI chr 9:90,509,633...90,512,212
Ensembl chr 9:90,509,633...90,512,212
JBrowse link
G Gfi1 growth factor independent 1 transcriptional repressor acts_upstream_of_or_within ISO MGI:2449921 (MGI:2429425|PMID:12441305) RGD PMID:12441305 MGI:2429425 NCBI chr14:2,040,576...2,056,874
Ensembl chr14:2,042,434...2,051,814
JBrowse link
G Hmx2 H6 family homeobox 2 acts_upstream_of_or_within ISO MGI:107160|MGI:2154542 (MGI:2154463|PMID:11748138), (MGI:3055237|PMID:15363417) RGD PMID:11748138 PMID:15363417 MGI:2154463 MGI:3055237 NCBI chr 1:186,319,110...186,326,771
Ensembl chr 1:186,319,110...186,326,771
JBrowse link
G Hmx3 H6 family homeobox 3 acts_upstream_of_or_within ISO MGI:107159|MGI:1857577 (MGI:1197796|PMID:9435283), (MGI:3055237|PMID:15363417) RGD PMID:9435283 PMID:15363417 MGI:1197796 MGI:3055237 NCBI chr 1:186,313,237...186,315,201
Ensembl chr 1:186,313,063...186,315,201
JBrowse link
G Hoxa1 homeobox A1 acts_upstream_of_or_within ISO MGI:3056069 (MGI:3055618|PMID:15367676) RGD PMID:15367676 MGI:3055618 NCBI chr 4:81,255,814...81,258,504
Ensembl chr 4:81,255,883...81,258,504
JBrowse link
G Insig1 insulin induced gene 1 acts_upstream_of_or_within ISO MGI:1920249 (MGI:3689278|PMID:16955138) RGD PMID:16955138 MGI:3689278 NCBI chr 4:7,315,494...7,323,972
Ensembl chr 4:7,315,495...7,323,952
JBrowse link
G Insig2 insulin induced gene 2 acts_upstream_of_or_within ISO MGI:1916289 (MGI:3689278|PMID:16955138) RGD PMID:16955138 MGI:3689278 NCBI chr13:32,472,390...32,500,139
Ensembl chr13:32,473,742...32,494,923
JBrowse link
G Itga8 integrin subunit alpha 8 acts_upstream_of_or_within ISO MGI:2181699 (MGI:1355040|PMID:10742111) RGD PMID:10742111 MGI:1355040 NCBI chr17:75,304,004...75,501,510
Ensembl chr17:75,304,008...75,501,510
JBrowse link
G Kcnq1 potassium voltage-gated channel subfamily Q member 1 involved_in ISO
IEA
MGI:2680653 (MGI:1931646|PMID:11226272)
GO_REF:0000107
RGD
Ensembl
PMID:11226272 GO_REF:0000107 MGI:1931646 NCBI chr 1:198,291,711...198,624,683
Ensembl chr 1:198,291,766...198,624,669
JBrowse link
G Kcnq4 potassium voltage-gated channel subfamily Q member 4 involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:3618993 (MGI:3617033|PMID:16437162)
Ensembl
RGD
PMID:16437162 GO_REF:0000107 MGI:3617033 NCBI chr 5:134,275,145...134,326,992
Ensembl chr 5:134,275,934...134,326,932
JBrowse link
G Mafb MAF bZIP transcription factor B acts_upstream_of_or_within ISO MGI:1856419 (MGI:3611672|PMID:16325169) RGD PMID:16325169 MGI:3611672 NCBI chr 3:148,998,111...149,000,031
Ensembl chr 3:148,998,122...149,000,031
JBrowse link
G Myo15a myosin XVA acts_upstream_of_or_within ISO MGI:1857036 (MGI:3041655|PMID:14724386), (MGI:3054106|PMID:11718241) RGD PMID:11718241 PMID:14724386 MGI:3041655 MGI:3054106 NCBI chr10:45,277,619...45,335,953
Ensembl chr10:45,278,737...45,335,340
JBrowse link
G Myo6 myosin VI involved_in
acts_upstream_of_or_within
IBA
ISO
PMID:21873635
MGI:1856555 (MGI:77423|PMID:7493015)
RGD PMID:7493015 PMID:21873635 MGI:77423, RGD:13792537 NCBI chr 8:81,087,157...81,242,022
Ensembl chr 8:81,087,139...81,239,292
JBrowse link
G Myo7a myosin VIIA acts_upstream_of_or_within ISO MGI:1856716|MGI:1860092|MGI:2155422|MGI:3511858 (MGI:2156358|PMID:11753415), (MGI:3510503|PMID:15389316), (MGI:53596|PMID:5795329) RGD PMID:5795329 PMID:11753415 PMID:15389316 MGI:2156358 MGI:3510503 MGI:53596 NCBI chr 1:152,342,611...152,414,171
Ensembl chr 1:152,344,448...152,414,157
JBrowse link
G Neurog1 neurogenin 1 involved_in
acts_upstream_of_or_within
ISO UniProtKB:Q6ZNK6|UniProtKB:Q8TF63 (PMID:23419067)
MGI:2183171 (MGI:3607238|PMID:16145671)
RGD PMID:16145671 PMID:23419067 MGI:3607238 NCBI chr17:8,362,878...8,364,397
Ensembl chr17:8,362,821...8,364,571
JBrowse link
G Nr4a3 nuclear receptor subfamily 4, group A, member 3 acts_upstream_of_or_within ISO MGI:3037444 (MGI:2157256|PMID:11784868) RGD PMID:11784868 MGI:2157256 NCBI chr 5:62,361,588...62,401,489
Ensembl chr 5:62,361,822...62,402,733
JBrowse link
G Ntn1 netrin 1 involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:2137018 (MGI:3718276|PMID:17616930)
Ensembl
RGD
PMID:17616930 GO_REF:0000107 MGI:3718276 NCBI chr10:52,899,933...53,098,591
Ensembl chr10:52,899,934...53,085,326
JBrowse link
G Otop1 otopetrin 1 acts_upstream_of_or_within
involved_in
ISO
IBA
MGI:1856638|MGI:2655558 (MGI:2654297|PMID:12651873)
PMID:21873635
RGD PMID:12651873 PMID:21873635 MGI:2654297, RGD:13792537 NCBI chr14:72,505,036...72,532,497
Ensembl chr14:72,503,592...72,532,497
JBrowse link
G Otx1 orthodenticle homeobox 1 involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:2136272|MGI:97451 (MGI:1335816|PMID:10225993)
Ensembl
RGD
PMID:10225993 GO_REF:0000107 MGI:1335816 NCBI chr14:96,082,151...96,089,161
Ensembl chr14:96,082,151...96,089,086
JBrowse link
G Otx2 orthodenticle homeobox 2 acts_upstream_of_or_within ISO MGI:97450 (MGI:1335816|PMID:10225993) RGD PMID:10225993 MGI:1335816 NCBI chr15:21,942,233...21,953,034
Ensembl chr15:21,943,191...21,953,416
JBrowse link
G Pax2 paired box 2 involved_in
acts_upstream_of_or_within
ISS
ISO
GO_REF:0000024
UniProtKB:Q00288 (MGI:4822275|PMID:20727173), (MGI:84247|PMID:8951055)
MGI:109344|MGI:1857673 (MGI:3052393|PMID:15242798), (MGI:3702803|PMID:16916509)
UniProt
RGD
PMID:8951055 PMID:15242798 PMID:16916509 PMID:20727173 GO_REF:0000024 MGI:3052393 MGI:3702803 MGI:4822275 MGI:84247 NCBI chr 1:243,616,509...243,697,454
Ensembl chr 1:243,616,606...243,695,321
JBrowse link
G Pax8 paired box 8 involved_in ISO UniProtKB:P32114 (MGI:4822275|PMID:20727173) RGD PMID:20727173 MGI:4822275 NCBI chr 3:7,185,721...7,242,363
Ensembl chr 3:7,185,723...7,242,363
JBrowse link
G Pou4f3 POU class 4 homeobox 3 acts_upstream_of_or_within ISO MGI:1857425 (MGI:2451279|PMID:12585968) RGD PMID:12585968 MGI:2451279 NCBI chr18:34,390,205...34,392,797
Ensembl chr18:34,390,205...34,392,797
JBrowse link
G Prrx1 paired related homeobox 1 acts_upstream_of_or_within ISO MGI:98218 (MGI:1306737|PMID:9729491) RGD PMID:9729491 MGI:1306737 NCBI chr13:75,600,777...75,671,896
Ensembl chr13:75,601,706...75,670,866
JBrowse link
G Prrx2 paired related homeobox 2 acts_upstream_of_or_within ISO MGI:97712 (MGI:1306737|PMID:9729491) RGD PMID:9729491 MGI:1306737 NCBI chr 3:14,132,511...14,168,535
Ensembl chr 3:14,094,004...14,168,535
JBrowse link
G Ptprq protein tyrosine phosphatase, receptor type, Q acts_upstream_of_or_within ISO MGI:2679316 (MGI:2677560|PMID:14534255) RGD PMID:14534255 MGI:2677560 NCBI chr 7:42,837,109...43,016,917
Ensembl chr 7:42,837,109...43,016,917
JBrowse link
G Ror2 receptor tyrosine kinase-like orphan receptor 2 acts_upstream_of_or_within ISO MGI:2183225 (MGI:3814781|PMID:18606138) RGD PMID:18606138 MGI:3814781 NCBI chr17:11,972,830...12,148,152
Ensembl chr17:11,972,830...12,148,152
JBrowse link
G Six1 SIX homeobox 1 acts_upstream_of_or_within ISO MGI:106034 (MGI:3578604|PMID:15788460) RGD PMID:15788460 MGI:3578604 NCBI chr 6:91,746,739...91,751,975
Ensembl chr 6:91,746,739...91,751,975
JBrowse link
G Six4 SIX homeobox 4 acts_upstream_of_or_within ISO MGI:102780 (MGI:3578604|PMID:15788460) RGD PMID:15788460 MGI:3578604 NCBI chr 6:91,802,328...91,816,062
Ensembl chr 6:91,802,329...91,815,992
JBrowse link
G Slitrk6 SLIT and NTRK-like family, member 6 acts_upstream_of_or_within ISO MGI:4417931 (MGI:4413621|PMID:19936227) RGD PMID:19936227 MGI:4413621 NCBI chr15:87,563,506...87,570,125
Ensembl chr15:87,563,322...87,570,393
JBrowse link
G Sobp sine oculis binding protein homolog acts_upstream_of_or_within ISO MGI:1856614 (MGI:3664354|PMID:16962269) RGD PMID:16962269 MGI:3664354 NCBI chr20:46,482,265...46,661,452
Ensembl chr20:46,482,765...46,663,541
JBrowse link
G Sox2 SRY-box transcription factor 2 acts_upstream_of_or_within ISO MGI:2447995 (MGI:3578496|PMID:15846349) RGD PMID:15846349 MGI:3578496 NCBI chr 2:117,536,929...117,539,338
Ensembl chr 2:117,536,929...117,539,338
JBrowse link
G Spry2 sprouty RTK signaling antagonist 2 acts_upstream_of_or_within ISO MGI:3578633|MGI:99604 (MGI:3577817|PMID:15809037) RGD PMID:15809037 MGI:3577817 NCBI chr15:82,692,312...82,697,408
Ensembl chr15:82,692,143...82,698,009
JBrowse link
G Tbx1 T-box transcription factor 1 involved_in
acts_upstream_of_or_within
ISS
ISO
GO_REF:0000024
MGI:2179136|MGI:2179190|MGI:2179191|MGI:3046196|MGI:3619149 (MGI:2671642|PMID:12913075), (MGI:3039048|PMID:15084464), (MGI:3530686|PMID:15652707), (MGI:3629255|PMID:16600992)
UniProt
RGD
PMID:12913075 PMID:15084464 PMID:15652707 PMID:16600992 GO_REF:0000024 MGI:2671642 MGI:3039048 MGI:3530686 MGI:3629255 NCBI chr11:82,409,275...82,419,058
Ensembl chr11:82,409,275...82,418,380
JBrowse link
G Tbx3 T-box transcription factor 3 involved_in ISO UniProtKB:Q60707 (MGI:6710296|PMID:33795231) RGD PMID:33795231 MGI:6710296 NCBI chr12:36,879,924...36,894,849
Ensembl chr12:36,881,445...36,893,708
JBrowse link
G Tfap2a transcription factor AP-2 alpha involved_in ISS
ISO
GO_REF:0000024
(PMID:21204207)
UniProt
RGD
PMID:21204207 GO_REF:0000024 NCBI chr17:24,028,716...24,047,507
Ensembl chr17:24,024,432...24,047,507
JBrowse link
G Tifab TIFA inhibitor involved_in ISO UniProtKB:Q8TF63|UniProtKB:Q92886 (PMID:23419067) RGD PMID:23419067 NCBI chr17:8,433,406...8,436,541
Ensembl chr17:8,431,635...8,436,592
JBrowse link
G Tmie transmembrane inner ear involved_in
acts_upstream_of_or_within
IBA
ISO
PMID:21873635
MGI:1857053 (MGI:2183496|PMID:12140191)
RGD PMID:12140191 PMID:21873635 MGI:2183496, RGD:13792537 NCBI chr 8:110,849,713...110,864,803
Ensembl chr 8:110,850,034...110,864,803
JBrowse link
G Ush1c USH1 protein network component harmonin involved_in
acts_upstream_of_or_within
IBA
ISO
PMID:21873635
MGI:2651858|MGI:2651859 (MGI:2675093|PMID:14519688)
RGD PMID:14519688 PMID:21873635 MGI:2675093, RGD:13792537 NCBI chr 1:96,695,303...96,743,671
Ensembl chr 1:96,695,307...96,743,671
JBrowse link
G Ush1g USH1 protein network component sans acts_upstream_of_or_within ISO MGI:2450561 (MGI:2450572|PMID:12588793), (MGI:49706|PMID:1927362) RGD PMID:1927362 PMID:12588793 MGI:2450572 MGI:49706 NCBI chr10:100,559,721...100,563,590
Ensembl chr10:100,557,629...100,563,590
JBrowse link
G Wnt1 Wnt family member 1 acts_upstream_of_or_within ISO MGI:98956 (MGI:3582112|PMID:15961523) RGD PMID:15961523 MGI:3582112 NCBI chr 7:129,938,604...129,942,651
Ensembl chr 7:129,938,604...129,942,651
JBrowse link
G Wnt3a Wnt family member 3A acts_upstream_of_or_within ISO MGI:98953 (MGI:3582112|PMID:15961523) RGD PMID:15961523 MGI:3582112 NCBI chr10:44,034,174...44,078,463
Ensembl chr10:44,034,194...44,078,324
JBrowse link
G Wnt5a Wnt family member 5A acts_upstream_of_or_within ISO (MGI:3823145|PMID:18991062) RGD PMID:18991062 MGI:3823145 NCBI chr16:3,695,667...3,718,234
Ensembl chr16:3,697,032...3,718,234
JBrowse link
auditory receptor cell morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Mir96 microRNA 96 acts_upstream_of_or_within ISO MGI:4354110 (MGI:4353582|PMID:19363478) RGD PMID:19363478 MGI:4353582 NCBI chr 4:58,788,411...58,788,516
Ensembl chr 4:58,788,411...58,788,516
JBrowse link
G Rac1 Rac family small GTPase 1 acts_upstream_of_or_within ISO MGI:2663662|MGI:2663669 (MGI:4430014|PMID:20016102) RGD PMID:20016102 MGI:4430014 NCBI chr12:11,037,028...11,057,251
Ensembl chr12:11,036,698...11,057,251
JBrowse link
G Scrib scribble planar cell polarity protein acts_upstream_of_or_within ISO MGI:2139764 (MGI:4439427|PMID:20215345) RGD PMID:20215345 MGI:4439427 NCBI chr 7:107,759,343...107,782,364
Ensembl chr 7:107,759,343...107,782,331
JBrowse link
G Sec24b SEC24 homolog B, COPII coat complex component acts_upstream_of_or_within ISO MGI:2145950|MGI:4440621 (MGI:4439427|PMID:20215345) RGD PMID:20215345 MGI:4439427 NCBI chr 2:218,562,670...218,632,753
Ensembl chr 2:218,562,676...218,632,699
JBrowse link
G Slitrk6 SLIT and NTRK-like family, member 6 acts_upstream_of_or_within ISO MGI:4417931 (MGI:4413621|PMID:19936227) RGD PMID:19936227 MGI:4413621 NCBI chr15:87,563,506...87,570,125
Ensembl chr15:87,563,322...87,570,393
JBrowse link
G Wdpcp WD repeat containing planar cell polarity effector involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:5558098 (MGI:5544506|PMID:24302887)
Ensembl
RGD
PMID:24302887 GO_REF:0000107 MGI:5544506 NCBI chr14:95,645,955...95,977,120
Ensembl chr14:95,646,038...95,977,113
JBrowse link
auditory receptor cell stereocilium organization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Atp2b2 ATPase plasma membrane Ca2+ transporting 2 acts_upstream_of_or_within ISO MGI:1856799 (MGI:3709803|PMID:11875276) RGD PMID:11875276 MGI:3709803 NCBI chr 4:146,896,332...147,140,665
Ensembl chr 4:146,896,332...147,140,665
JBrowse link
G Cdh23 cadherin-related 23 involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:1856228|MGI:1856681|MGI:1891428|MGI:2154548|MGI:2154549 (MGI:1929001|PMID:11138008), (MGI:1933915|PMID:11322776), (MGI:3526751|PMID:15537665), (MGI:3625226|PMID:12121736), (MGI:3686545|PMID:17050716), (MGI:5468200|PMID:23217710), (MGI:75953|PMID:7610888), (MGI:81497|PMID:8790740), (MGI:86134|PMID:9039475)
Ensembl
RGD
PMID:7610888 PMID:8790740 PMID:9039475 PMID:11138008 PMID:11322776 More... GO_REF:0000107 MGI:1929001 MGI:1933915 MGI:3526751 MGI:3625226 MGI:3686545 MGI:5468200 MGI:75953 MGI:81497 MGI:86134 NCBI chr20:28,240,643...28,622,490
Ensembl chr20:28,240,645...28,622,419
JBrowse link
G Clic5 chloride intracellular channel 5 involved_in
acts_upstream_of_or_within
IBA
ISO
PMID:21873635
MGI:3663254 (MGI:3663248|PMID:17021174)
RGD PMID:17021174 PMID:21873635 MGI:3663248, RGD:13792537 NCBI chr 9:16,710,980...16,813,427
Ensembl chr 9:16,710,980...16,813,427
JBrowse link
G Clrn1 clarin 1 involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:3850171 (MGI:3849925|PMID:19414487), (MGI:4353469|PMID:19423712)
Ensembl
RGD
PMID:19414487 PMID:19423712 GO_REF:0000107 MGI:3849925 MGI:4353469 NCBI chr 2:143,084,030...143,130,948
Ensembl chr 2:143,084,030...143,130,948
JBrowse link
G Clrn2 clarin 2 acts_upstream_of_or_within ISO (PMID:33496845) RGD PMID:33496845 NCBI chr14:65,656,550...65,666,193
Ensembl chr14:65,656,550...65,666,193
JBrowse link
G Grxcr2 glutaredoxin and cysteine rich domain containing 2 acts_upstream_of_or_within ISO MGI:2139535|MGI:6281113|MGI:6281114 (MGI:6278501|PMID:30380417) RGD PMID:30380417 MGI:6278501 NCBI chr18:33,984,689...33,998,094
Ensembl chr18:33,984,689...33,998,094
JBrowse link
G Lhfpl5 LHFPL tetraspan subfamily member 5 acts_upstream_of_or_within ISO MGI:3055797|MGI:3718054 (MGI:3578102|PMID:15905332), (MGI:3759710|PMID:17876667), (MGI:5468200|PMID:23217710) RGD PMID:15905332 PMID:17876667 PMID:23217710 MGI:3578102 MGI:3759710 MGI:5468200 NCBI chr20:6,632,362...6,642,534
Ensembl chr20:6,632,362...6,642,532
JBrowse link
G Myo3a myosin IIIA involved_in ISO MGI:2448580 (MGI:5766107|PMID:26754646) RGD PMID:26754646 MGI:5766107 NCBI chr17:84,554,785...84,604,748
Ensembl chr17:84,543,552...84,759,042
JBrowse link
G Myo3b myosin IIIB involved_in ISO MGI:2183924 (MGI:5766107|PMID:26754646) RGD PMID:26754646 MGI:5766107 NCBI chr 3:54,873,704...55,226,189
Ensembl chr 3:54,820,251...55,227,373
JBrowse link
G Myo7a myosin VIIA acts_upstream_of_or_within ISO MGI:1860092|MGI:2155422 (MGI:2156358|PMID:11753415), (MGI:3625226|PMID:12121736), (MGI:3686545|PMID:17050716) RGD PMID:11753415 PMID:12121736 PMID:17050716 MGI:2156358 MGI:3625226 MGI:3686545 NCBI chr 1:152,342,611...152,414,171
Ensembl chr 1:152,344,448...152,414,157
JBrowse link
G Pcdh15 protocadherin related 15 acts_upstream_of_or_within ISO MGI:1855958|MGI:1856394|MGI:1856396|MGI:1890219|MGI:2151877|MGI:3505691 (MGI:1928787|PMID:10978835), (MGI:3526751|PMID:15537665), (MGI:3619110|PMID:11124469), (MGI:3654702|PMID:16887306), (MGI:5468200|PMID:23217710) RGD PMID:10978835 PMID:11124469 PMID:15537665 PMID:16887306 PMID:23217710 MGI:1928787 MGI:3526751 MGI:3619110 MGI:3654702 MGI:5468200 NCBI chr20:13,997,094...15,496,446
Ensembl chr20:13,963,565...15,494,719
JBrowse link
G Pdzd7 PDZ domain containing 7 involved_in
acts_upstream_of_or_within
IBA
ISO
PMID:21873635
MGI:4433578 (MGI:5565635|PMID:24334608)
RGD PMID:24334608 PMID:21873635 MGI:5565635, RGD:13792537 NCBI chr 1:243,888,295...243,907,778
Ensembl chr 1:243,888,281...243,906,839
JBrowse link
G Pls1 plastin 1 involved_in ISO (MGI:5608770|PMID:25124451) RGD PMID:25124451 MGI:5608770 NCBI chr 8:96,316,703...96,426,592
Ensembl chr 8:96,317,849...96,385,195
JBrowse link
G Rest RE1-silencing transcription factor involved_in ISS
ISO
GO_REF:0000024
(MGI:6193260|PMID:29961578)
UniProt
RGD
PMID:29961578 GO_REF:0000024 MGI:6193260 NCBI chr14:30,859,109...30,879,828
Ensembl chr14:30,862,553...30,894,354
JBrowse link
G Ripor2 RHO family interacting cell polarization regulator 2 involved_in ISO (MGI:5789047|PMID:27269051) RGD PMID:27269051 MGI:5789047 NCBI chr17:40,323,867...40,547,482
Ensembl chr17:40,323,867...40,548,092
JBrowse link
G Scrib scribble planar cell polarity protein acts_upstream_of_or_within ISO MGI:2139764 (MGI:4439427|PMID:20215345) RGD PMID:20215345 MGI:4439427 NCBI chr 7:107,759,343...107,782,364
Ensembl chr 7:107,759,343...107,782,331
JBrowse link
G Sec24b SEC24 homolog B, COPII coat complex component acts_upstream_of_or_within ISO MGI:2145950|MGI:4440621 (MGI:4439427|PMID:20215345) RGD PMID:20215345 MGI:4439427 NCBI chr 2:218,562,670...218,632,753
Ensembl chr 2:218,562,676...218,632,699
JBrowse link
G Slc9a3r1 SLC9A3 regulator 1 acts_upstream_of_or_within ISO MGI:3526430 (MGI:5578076|PMID:24920589) RGD PMID:24920589 MGI:5578076 NCBI chr10:100,403,189...100,420,290
Ensembl chr10:100,403,069...100,420,598
JBrowse link
G Sod1 superoxide dismutase 1 involved_in
acts_upstream_of_or_within
ISS
ISO
GO_REF:0000024
MGI:1857872 (MGI:1344578|PMID:10466888), (MGI:3700629|PMID:10464373)
UniProt
RGD
PMID:10464373 PMID:10466888 GO_REF:0000024 MGI:1344578 MGI:3700629 NCBI chr11:29,456,673...29,462,249
Ensembl chr11:29,456,558...29,462,249
JBrowse link
G Strc stereocilin acts_upstream_of_or_within
involved_in
ISO MGI:3818633 (MGI:3818235|PMID:18849963)
(MGI:5430850|PMID:21165971)
RGD PMID:18849963 PMID:21165971 MGI:3818235 MGI:5430850 NCBI chr 3:108,335,920...108,355,114
Ensembl chr 3:108,335,747...108,354,134
JBrowse link
G Tprn taperin acts_upstream_of_or_within
involved_in
ISO
IBA
MGI:2685697 (MGI:6278501|PMID:30380417)
PMID:21873635
RGD PMID:30380417 PMID:21873635 MGI:6278501, RGD:13792537 NCBI chr 3:8,076,164...8,083,642
Ensembl chr 3:8,075,137...8,083,642
JBrowse link
G Triobp TRIO and F-actin binding protein acts_upstream_of_or_within ISO MGI:4881773 (MGI:4881391|PMID:20510926) RGD PMID:20510926 MGI:4881391 NCBI chr 7:110,505,916...110,569,301
Ensembl chr 7:110,506,248...110,562,474
JBrowse link
G Whrn whirlin involved_in
acts_upstream_of_or_within
IBA
ISO
IEA
PMID:21873635
MGI:4432119 (MGI:5796227|PMID:27117407)
GO_REF:0000107
RGD
Ensembl
PMID:27117407 PMID:21873635 GO_REF:0000107 MGI:5796227, RGD:13792537 NCBI chr 5:76,828,308...76,911,945
Ensembl chr 5:76,828,301...76,912,223
JBrowse link
cochlea morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cthrc1 collagen triple helix repeat containing 1 acts_upstream_of_or_within ISO MGI:1915838 (MGI:3814781|PMID:18606138) RGD PMID:18606138 MGI:3814781 NCBI chr 7:70,122,474...70,132,756
Ensembl chr 7:70,122,474...70,132,756
JBrowse link
G Dvl1 dishevelled segment polarity protein 1 acts_upstream_of_or_within ISO MGI:106613 (MGI:3589836|PMID:16116426) RGD PMID:16116426 MGI:3589836 NCBI chr 5:166,456,989...166,468,733
Ensembl chr 5:166,456,686...166,468,664
JBrowse link
G Dvl2 dishevelled segment polarity protein 2 acts_upstream_of_or_within ISO MGI:108100|MGI:94941 (MGI:3589836|PMID:16116426), (MGI:3821448|PMID:19008950) RGD PMID:16116426 PMID:19008950 MGI:3589836 MGI:3821448 NCBI chr10:54,723,356...54,732,823
Ensembl chr10:54,723,411...54,732,820
JBrowse link
G Dvl3 dishevelled segment polarity protein 3 acts_upstream_of_or_within ISO MGI:106613|MGI:2135272 (MGI:3821448|PMID:19008950) RGD PMID:19008950 MGI:3821448 NCBI chr11:80,365,446...80,382,641
Ensembl chr11:80,366,117...80,382,462
JBrowse link
G Eya1 EYA transcriptional coactivator and phosphatase 1 acts_upstream_of_or_within ISO MGI:1857803 (MGI:1335261|PMID:10072433) RGD PMID:10072433 MGI:1335261 NCBI chr 5:4,863,501...5,101,483
Ensembl chr 5:4,955,543...5,101,483
JBrowse link
G Frzb frizzled-related protein acts_upstream_of_or_within ISO MGI:98958 (MGI:3714704|PMID:17433286) RGD PMID:17433286 MGI:3714704 NCBI chr 3:65,332,274...65,365,208
Ensembl chr 3:65,332,277...65,365,208
JBrowse link
G Fzd2 frizzled class receptor 2 involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:2135272 (MGI:4837757|PMID:20940229)
Ensembl
RGD
PMID:20940229 GO_REF:0000107 MGI:4837757 NCBI chr10:87,561,866...87,563,776
Ensembl chr10:87,561,326...87,565,334
JBrowse link
G Gli2 GLI family zinc finger 2 acts_upstream_of_or_within ISO MGI:1857509 (MGI:3709667|PMID:17395647) RGD PMID:17395647 MGI:3709667 NCBI chr13:29,946,809...30,163,901
Ensembl chr13:29,946,809...30,163,574
JBrowse link
G Grhl3 grainyhead-like transcription factor 3 acts_upstream_of_or_within ISO MGI:2135272 (MGI:4819429|PMID:20643356) RGD PMID:20643356 MGI:4819429 NCBI chr 5:147,774,160...147,806,338
Ensembl chr 5:147,774,160...147,806,160
JBrowse link
G Hoxa1 homeobox A1 involved_in ISO (PMID:16155570) RGD PMID:16155570 NCBI chr 4:81,255,814...81,258,504
Ensembl chr 4:81,255,883...81,258,504
JBrowse link
G Hpn hepsin involved_in ISS
ISO
GO_REF:0000024
(MGI:5306554|PMID:20683358)
UniProt
RGD
PMID:20683358 GO_REF:0000024 MGI:5306554 NCBI chr 1:86,337,085...86,352,785
Ensembl chr 1:86,337,087...86,352,811
JBrowse link
G Myo3a myosin IIIA involved_in ISO (MGI:5766107|PMID:26754646) RGD PMID:26754646 MGI:5766107 NCBI chr17:84,554,785...84,604,748
Ensembl chr17:84,543,552...84,759,042
JBrowse link
G Myo3b myosin IIIB involved_in ISO (MGI:5766107|PMID:26754646) RGD PMID:26754646 MGI:5766107 NCBI chr 3:54,873,704...55,226,189
Ensembl chr 3:54,820,251...55,227,373
JBrowse link
G Neurog1 neurogenin 1 involved_in ISO UniProtKB:Q6ZNK6|UniProtKB:Q8TF63 (PMID:23419067) RGD PMID:23419067 NCBI chr17:8,362,878...8,364,397
Ensembl chr17:8,362,821...8,364,571
JBrowse link
G Pax2 paired box 2 involved_in
acts_upstream_of_or_within
ISS
ISO
GO_REF:0000024
MGI:1857673 (MGI:3702803|PMID:16916509)
UniProtKB:Q00288 (MGI:4822275|PMID:20727173), (MGI:84247|PMID:8951055)
UniProt
RGD
PMID:8951055 PMID:16916509 PMID:20727173 GO_REF:0000024 MGI:3702803 MGI:4822275 MGI:84247 NCBI chr 1:243,616,509...243,697,454
Ensembl chr 1:243,616,606...243,695,321
JBrowse link
G Pou3f4 POU class 3 homeobox 4 involved_in ISS
ISO
GO_REF:0000024
UniProtKB:P70323 (MGI:5284768|PMID:18231833)
UniProt
RGD
PMID:18231833 GO_REF:0000024 MGI:5284768 NCBI chr  X:75,858,646...75,859,923
Ensembl chr  X:75,858,646...75,859,923
JBrowse link
G Ptk7 protein tyrosine kinase 7 acts_upstream_of_or_within ISO MGI:3640803 (MGI:4830023|PMID:20704721) RGD PMID:20704721 MGI:4830023 NCBI chr 9:14,352,155...14,418,494
Ensembl chr 9:14,351,202...14,418,494
JBrowse link
G Rac1 Rac family small GTPase 1 acts_upstream_of_or_within ISO MGI:2663662|MGI:2663669 (MGI:4430014|PMID:20016102) RGD PMID:20016102 MGI:4430014 NCBI chr12:11,037,028...11,057,251
Ensembl chr12:11,036,698...11,057,251
JBrowse link
G Six1 SIX homeobox 1 acts_upstream_of_or_within ISO MGI:2655195 (MGI:2671031|PMID:12874121) RGD PMID:12874121 MGI:2671031 NCBI chr 6:91,746,739...91,751,975
Ensembl chr 6:91,746,739...91,751,975
JBrowse link
G Sox9 SRY-box transcription factor 9 involved_in
acts_upstream_of_or_within
ISS
ISO
GO_REF:0000024
MGI:2385468|MGI:3841145 (MGI:4454502|PMID:20346939)
UniProt
RGD
PMID:20346939 GO_REF:0000024 MGI:4454502 NCBI chr10:97,806,485...97,811,994
Ensembl chr10:97,806,485...97,811,994
JBrowse link
G Tbx1 T-box transcription factor 1 involved_in
acts_upstream_of_or_within
ISS
ISO
GO_REF:0000024
MGI:2179136 (MGI:3765363|PMID:17825816)
UniProtKB:P62515 (MGI:5284768|PMID:18231833)
UniProt
RGD
PMID:17825816 PMID:18231833 GO_REF:0000024 MGI:3765363 MGI:5284768 NCBI chr11:82,409,275...82,419,058
Ensembl chr11:82,409,275...82,418,380
JBrowse link
G Tbx18 T-box transcription factor 18 acts_upstream_of_or_within ISO MGI:3044915 (MGI:3788971|PMID:18353863) RGD PMID:18353863 MGI:3788971 NCBI chr 8:88,652,054...88,680,081
Ensembl chr 8:88,652,054...88,680,058
JBrowse link
G Tbx2 T-box transcription factor 2 involved_in IEA
ISO
GO_REF:0000107
(MGI:6710296|PMID:33795231)
Ensembl
RGD
PMID:33795231 GO_REF:0000107 MGI:6710296 NCBI chr10:70,679,670...70,688,868
Ensembl chr10:70,679,518...70,688,529
JBrowse link
G Tifab TIFA inhibitor involved_in ISO UniProtKB:Q8TF63|UniProtKB:Q92886 (PMID:23419067) RGD PMID:23419067 NCBI chr17:8,433,406...8,436,541
Ensembl chr17:8,431,635...8,436,592
JBrowse link
G Tshr thyroid stimulating hormone receptor involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
(MGI:3652455|PMID:10575115)
Ensembl
RGD
PMID:10575115 GO_REF:0000107 MGI:3652455 NCBI chr 6:110,341,585...110,475,297
Ensembl chr 6:110,341,581...110,474,538
JBrowse link
G Tshr-ps1 thyroid stimulating hormone receptor, pseudogene 1 acts_upstream_of_or_within ISO (MGI:3652455|PMID:10575115) RGD PMID:10575115 MGI:3652455 NCBI chr 4:92,142,656...92,143,138 JBrowse link
G Vangl2 VANGL planar cell polarity protein 2 acts_upstream_of_or_within ISO MGI:108100|MGI:1857642|MGI:1888513|MGI:2655333|MGI:98958 (MGI:3589836|PMID:16116426), (MGI:3714704|PMID:17433286), (MGI:3814781|PMID:18606138), (MGI:3821448|PMID:19008950), (MGI:4819429|PMID:20643356), (MGI:4837757|PMID:20940229) RGD PMID:16116426 PMID:17433286 PMID:18606138 PMID:19008950 PMID:20643356 More... MGI:3589836 MGI:3714704 MGI:3814781 MGI:3821448 MGI:4819429 MGI:4837757 NCBI chr13:84,462,731...84,489,404
Ensembl chr13:84,465,527...84,489,378
JBrowse link
G Wnt5a Wnt family member 5A involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:1857617|MGI:2135272 (MGI:3714704|PMID:17433286)
Ensembl
RGD
PMID:17433286 GO_REF:0000107 MGI:3714704 NCBI chr16:3,695,667...3,718,234
Ensembl chr16:3,697,032...3,718,234
JBrowse link
G Zeb1 zinc finger E-box binding homeobox 1 involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:1861230 (MGI:5294688|PMID:21980308)
Ensembl
RGD
PMID:21980308 GO_REF:0000107 MGI:5294688 NCBI chr17:51,948,948...52,116,018
Ensembl chr17:51,948,948...52,115,214
JBrowse link
otic vesicle formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Fgf10 fibroblast growth factor 10 acts_upstream_of_or_within ISO MGI:95517 (MGI:2683889|PMID:14623822) RGD PMID:14623822 MGI:2683889 NCBI chr 2:50,801,897...50,875,428
Ensembl chr 2:50,800,992...50,876,866
JBrowse link
G Fgf3 fibroblast growth factor 3 acts_upstream_of_or_within ISO MGI:1099809|MGI:99604 (MGI:3720541|PMID:17601531) RGD PMID:17601531 MGI:3720541 NCBI chr 1:200,001,261...200,005,187
Ensembl chr 1:200,001,261...200,005,187
JBrowse link
G Fgf8 fibroblast growth factor 8 acts_upstream_of_or_within ISO MGI:95517 (MGI:3720541|PMID:17601531) RGD PMID:17601531 MGI:3720541 NCBI chr 1:244,584,477...244,590,359
Ensembl chr 1:244,584,652...244,590,359
JBrowse link
G Fgfr2 fibroblast growth factor receptor 2 acts_upstream_of_or_within ISO MGI:2153790 (MGI:1197797|PMID:9435295) RGD PMID:9435295 MGI:1197797 NCBI chr 1:184,745,418...184,850,655
Ensembl chr 1:184,745,420...184,850,626
JBrowse link
G Hesx1 HESX homeobox 1 acts_upstream_of_or_within ISO MGI:1931124 (MGI:1206234|PMID:9620767) RGD PMID:9620767 MGI:1206234 NCBI chr16:2,191,852...2,193,957
Ensembl chr16:2,191,852...2,193,957
JBrowse link
G Sox9 SRY-box transcription factor 9 involved_in
acts_upstream_of_or_within
ISS
ISO
GO_REF:0000024
MGI:1932522|MGI:2385468 (MGI:3795349|PMID:18377888)
UniProt
RGD
PMID:18377888 GO_REF:0000024 MGI:3795349 NCBI chr10:97,806,485...97,811,994
Ensembl chr10:97,806,485...97,811,994
JBrowse link
G Tcap titin-cap acts_upstream_of_or_within ISO (PMID:9817758) RGD PMID:9817758 NCBI chr10:83,381,719...83,382,887
Ensembl chr10:83,381,719...83,382,887
JBrowse link
otic vesicle morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Eya1 EYA transcriptional coactivator and phosphatase 1 acts_upstream_of_or_within ISO MGI:2150426 (MGI:3702803|PMID:16916509) RGD PMID:16916509 MGI:3702803 NCBI chr 5:4,863,501...5,101,483
Ensembl chr 5:4,955,543...5,101,483
JBrowse link
G Tbx1 T-box transcription factor 1 acts_upstream_of_or_within ISO MGI:3046793 (MGI:3703494|PMID:17074316) RGD PMID:17074316 MGI:3703494 NCBI chr11:82,409,275...82,419,058
Ensembl chr11:82,409,275...82,418,380
JBrowse link
otolith formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Slc44a4 solute carrier family 44, member 4 involved_in ISS GO_REF:0000024 UniProt GO_REF:0000024 NCBI chr20:3,903,099...3,919,215
Ensembl chr20:3,903,099...3,919,215
JBrowse link
otolith morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bloc1s5 biogenesis of lysosomal organelles complex 1 subunit 5 acts_upstream_of_or_within ISO MGI:1856106 (MGI:53623|PMID:5367369) RGD PMID:5367369 MGI:53623 NCBI chr17:26,171,965...26,197,276
Ensembl chr17:26,172,018...26,197,251
JBrowse link
G Lrig1 leucine-rich repeats and immunoglobulin-like domains 1 acts_upstream_of_or_within ISO MGI:2443955 (MGI:5519140|PMID:24086156) RGD PMID:24086156 MGI:5519140 NCBI chr 4:127,130,899...127,230,956
Ensembl chr 4:127,130,898...127,231,513
JBrowse link
G Lrig3 leucine-rich repeats and immunoglobulin-like domains 3 acts_upstream_of_or_within ISO MGI:107935 (MGI:5519140|PMID:24086156) RGD PMID:24086156 MGI:5519140 NCBI chr 7:61,816,313...61,866,275
Ensembl chr 7:61,816,342...61,866,481
JBrowse link
G Ttc39c tetratricopeptide repeat domain 39C involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr18:3,768,802...3,887,932
Ensembl chr18:3,805,183...3,887,930
JBrowse link
positive regulation of otic vesicle morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Stox1 storkhead box 1 involved_in ISO (MGI:5635320|PMID:25677106) RGD PMID:25677106 MGI:5635320 NCBI chr20:30,598,656...30,666,371
Ensembl chr20:30,598,168...30,666,939
JBrowse link
semicircular canal formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Hoxa1 homeobox A1 involved_in ISO (PMID:16155570) RGD PMID:16155570 NCBI chr 4:81,255,814...81,258,504
Ensembl chr 4:81,255,883...81,258,504
JBrowse link
semicircular canal fusion term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Fgf10 fibroblast growth factor 10 acts_upstream_of_or_within ISO MGI:1859647 (MGI:3575490|PMID:15765517) RGD PMID:15765517 MGI:3575490 NCBI chr 2:50,801,897...50,875,428
Ensembl chr 2:50,800,992...50,876,866
JBrowse link
semicircular canal morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Chd7 chromodomain helicase DNA binding protein 7 acts_upstream_of_or_within ISO MGI:98493 (MGI:4397600|PMID:19855134) RGD PMID:19855134 MGI:4397600 NCBI chr 5:21,812,007...21,995,358
Ensembl chr 5:21,812,070...21,995,358
JBrowse link
G Eya1 EYA transcriptional coactivator and phosphatase 1 acts_upstream_of_or_within ISO MGI:1857803 (MGI:1335261|PMID:10072433) RGD PMID:10072433 MGI:1335261 NCBI chr 5:4,863,501...5,101,483
Ensembl chr 5:4,955,543...5,101,483
JBrowse link
G Fgf10 fibroblast growth factor 10 acts_upstream_of_or_within ISO MGI:95517 (MGI:3720541|PMID:17601531) RGD PMID:17601531 MGI:3720541 NCBI chr 2:50,801,897...50,875,428
Ensembl chr 2:50,800,992...50,876,866
JBrowse link
G Fgf3 fibroblast growth factor 3 acts_upstream_of_or_within ISO MGI:1099809 (MGI:3720541|PMID:17601531) RGD PMID:17601531 MGI:3720541 NCBI chr 1:200,001,261...200,005,187
Ensembl chr 1:200,001,261...200,005,187
JBrowse link
G Nr4a3 nuclear receptor subfamily 4, group A, member 3 acts_upstream_of_or_within ISO MGI:3037444 (MGI:2157256|PMID:11784868) RGD PMID:11784868 MGI:2157256 NCBI chr 5:62,361,588...62,401,489
Ensembl chr 5:62,361,822...62,402,733
JBrowse link
G Tbx1 T-box transcription factor 1 involved_in
acts_upstream_of_or_within
ISS
ISO
GO_REF:0000024
MGI:2444748 (MGI:4397600|PMID:19855134)
UniProt
RGD
PMID:19855134 GO_REF:0000024 MGI:4397600 NCBI chr11:82,409,275...82,419,058
Ensembl chr11:82,409,275...82,418,380
JBrowse link
G Tbx3 T-box transcription factor 3 involved_in ISO (MGI:6710296|PMID:33795231) RGD PMID:33795231 MGI:6710296 NCBI chr12:36,879,924...36,894,849
Ensembl chr12:36,881,445...36,893,708
JBrowse link
G Zeb1 zinc finger E-box binding homeobox 1 involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:1861230 (MGI:5294688|PMID:21980308)
Ensembl
RGD
PMID:21980308 GO_REF:0000107 MGI:5294688 NCBI chr17:51,948,948...52,116,018
Ensembl chr17:51,948,948...52,115,214
JBrowse link
vestibular receptor cell morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ptprq protein tyrosine phosphatase, receptor type, Q involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:2679316 (MGI:5315778|PMID:22357859)
Ensembl
RGD
PMID:22357859 GO_REF:0000107 MGI:5315778 NCBI chr 7:42,837,109...43,016,917
Ensembl chr 7:42,837,109...43,016,917
JBrowse link
vestibular receptor cell stereocilium organization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Pls1 plastin 1 involved_in ISO (MGI:5608770|PMID:25124451) RGD PMID:25124451 MGI:5608770 NCBI chr 8:96,316,703...96,426,592
Ensembl chr 8:96,317,849...96,385,195
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 19497
    developmental process 6889
      anatomical structure morphogenesis 2911
        embryonic morphogenesis 694
          inner ear morphogenesis 123
            auditory receptor cell morphogenesis + 27
            cochlea morphogenesis 29
            otic vesicle morphogenesis + 10
            otolith morphogenesis + 5
            semicircular canal morphogenesis + 9
            vestibular receptor cell morphogenesis + 2
Path 2
Term Annotations click to browse term
  biological_process 19497
    developmental process 6889
      anatomical structure development 6306
        multicellular organism development 5727
          system development 5373
            animal organ development 4130
              embryonic organ development 552
                embryonic organ morphogenesis 341
                  ear morphogenesis 146
                    inner ear morphogenesis 123
                      auditory receptor cell morphogenesis + 27
                      cochlea morphogenesis 29
                      otic vesicle morphogenesis + 10
                      otolith morphogenesis + 5
                      semicircular canal morphogenesis + 9
                      vestibular receptor cell morphogenesis + 2
paths to the root