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ONTOLOGY REPORT - ANNOTATIONS

Term:ear morphogenesis
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Accession:GO:0042471 term browser browse the term
Definition:The process in which the anatomical structures of the ear are generated and organized. The ear is the sense organ in vertebrates that is specialized for the detection of sound, and the maintenance of balance. Includes the outer ear and middle ear, which collect and transmit sound waves; and the inner ear, which contains the organs of balance and (except in fish) hearing. Also includes the pinna, the visible part of the outer ear, present in some mammals.
Synonyms:exact_synonym: hearing organ morphogenesis


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ear morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CHD7 chromodomain helicase DNA binding protein 7 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:10932191) Ensembl
MGI		 PMID:10932191 GO_REF:0000107 NCBI chr 4:72,572,455...72,754,443
Ensembl chr 4:72,573,453...72,694,146 		JBrowse link
G GJB6 gap junction protein beta 6 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:12490528) Ensembl
MGI		 PMID:12490528 GO_REF:0000107 NCBI chr11:793,276...800,109
Ensembl chr11:793,280...800,046 		JBrowse link
G NIPBL NIPBL cohesin loading factor involved_in IEA Ensembl GO_REF:0000107 NCBI chr16:22,152,455...22,364,373
Ensembl chr16:22,152,469...22,363,821 		JBrowse link
G TBX1 T-box transcription factor 1 acts_upstream_of_or_within ISO (PMID:15190012) MGI PMID:15190012 NCBI chr14:51,289,376...51,297,110
Ensembl chr14:51,289,321...51,296,725 		JBrowse link
G WDR19 WD repeat domain 19 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:22228095) Ensembl
MGI		 PMID:22228095 GO_REF:0000107 NCBI chr 8:30,453,969...30,553,699
Ensembl chr 8:30,463,862...30,553,703 		JBrowse link
auditory receptor cell morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G MIR96 microRNA mir-96 acts_upstream_of_or_within ISO (PMID:19363478) MGI PMID:19363478 NCBI chr18:18,982,506...18,982,590
Ensembl chr18:18,982,506...18,982,590 		JBrowse link
G RAC1 Rac family small GTPase 1 acts_upstream_of_or_within ISO (PMID:20016102) MGI PMID:20016102 NCBI chr 3:4,781,776...4,803,510
Ensembl chr 3:4,781,780...4,803,543 		JBrowse link
G SCRIB scribble planar cell polarity protein involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:20215345) Ensembl
MGI		 PMID:20215345 GO_REF:0000107 NCBI chr 4:824,925...852,360
Ensembl chr 4:825,062...852,664 		JBrowse link
G SEC24B SEC24 homolog B, COPII coat complex component involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:20215345) Ensembl
MGI		 PMID:20215345 GO_REF:0000107 NCBI chr 8:112,670,529...112,762,870
Ensembl chr 8:112,670,533...112,762,858 		JBrowse link
G SLITRK6 SLIT and NTRK like family member 6 acts_upstream_of_or_within ISO (PMID:19936227) MGI PMID:19936227 NCBI chr11:56,508,713...56,522,270
Ensembl chr11:56,508,767...56,522,197 		JBrowse link
G USH1C USH1 protein network component harmonin involved_in IBA GO_Central GO_REF:0000033 NCBI chr 2:41,593,793...41,646,777
Ensembl chr 2:41,593,802...41,647,247 		JBrowse link
G WDPCP WD repeat containing planar cell polarity effector involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:24302887) Ensembl
MGI		 PMID:24302887 GO_REF:0000107 NCBI chr 3:78,435,154...78,726,313
Ensembl chr 3:78,268,922...78,856,893 		JBrowse link
auditory receptor cell stereocilium organization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ANKRD24 ankyrin repeat domain 24 involved_in ISO (MGI:6885507|PMID:35175278) UniProt PMID:35175278 MGI:6885507 NCBI chr 2:74,540,868...74,568,402
Ensembl chr 2:74,540,870...74,567,837 		JBrowse link
G ATP2B2 ATPase plasma membrane Ca2+ transporting 2 acts_upstream_of_or_within ISO (PMID:11875276) MGI PMID:11875276 NCBI chr13:66,526,508...66,897,125
Ensembl chr13:66,528,323...66,897,128 		JBrowse link
G CDH23 cadherin related 23 acts_upstream_of_or_within ISO (PMID:15537665)
(PMID:11138008), (PMID:17050716), (PMID:23217710)
(PMID:12121736)
(PMID:7610888), (PMID:8790740), (PMID:9039475)
(PMID:11322776)		 MGI PMID:7610888 PMID:8790740 PMID:9039475 PMID:11138008 PMID:11322776 More... NCBI chr14:74,267,547...74,734,623
Ensembl chr14:74,223,089...74,733,834 		JBrowse link
G CLIC5 chloride intracellular channel 5 acts_upstream_of_or_within ISO (PMID:17021174) MGI PMID:17021174 NCBI chr 7:40,683,044...40,808,017
Ensembl chr 7:40,682,907...40,863,886 		JBrowse link
G CLRN1 clarin 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:19414487), (PMID:19423712) Ensembl
MGI		 PMID:19414487 PMID:19423712 GO_REF:0000107 NCBI chr13:91,104,850...91,152,397
Ensembl chr13:91,106,207...91,148,031 		JBrowse link
G CLRN2 clarin 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 8:12,551,855...12,564,512
Ensembl chr 8:12,551,892...12,564,379 		JBrowse link
G GRXCR2 glutaredoxin and cysteine rich domain containing 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:30380417) Ensembl
MGI		 PMID:30380417 GO_REF:0000107 NCBI chr 2:147,215,061...147,231,792
Ensembl chr 2:147,216,279...147,232,478 		JBrowse link
G LHFPL5 LHFPL tetraspan subfamily member 5 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:15905332)
(PMID:17876667), (PMID:23217710)		 Ensembl
MGI		 PMID:15905332 PMID:17876667 PMID:23217710 GO_REF:0000107 NCBI chr 7:31,624,050...31,642,269
Ensembl chr 7:31,624,450...31,642,268 		JBrowse link
G MYO3A myosin IIIA involved_in ISO (PMID:26754646) MGI PMID:26754646 NCBI chr10:49,392,119...49,623,575 JBrowse link
G MYO3B myosin IIIB involved_in ISO (PMID:26754646) MGI PMID:26754646 NCBI chr15:76,432,429...76,855,443
Ensembl chr15:76,401,963...76,855,429 		JBrowse link
G MYO7A myosin VIIA involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:17050716)
(PMID:11753415)
(PMID:12121736)		 Ensembl
MGI		 PMID:11753415 PMID:12121736 PMID:17050716 GO_REF:0000107 NCBI chr 9:11,251,187...11,337,618
Ensembl chr 9:11,249,075...11,666,296 		JBrowse link
G NHERF1 NHERF family PDZ scaffold protein 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:24920589) Ensembl
MGI		 PMID:24920589 GO_REF:0000107 NCBI chr12:6,466,138...6,483,539
Ensembl chr12:6,466,121...6,483,548 		JBrowse link
G PCDH15 protocadherin related 15 acts_upstream_of_or_within ISO (PMID:11124469)
(PMID:15537665)
(PMID:10978835)
(PMID:23217710)
(PMID:16887306)		 MGI PMID:10978835 PMID:11124469 PMID:15537665 PMID:16887306 PMID:23217710 NCBI chr14:95,530,168...96,388,032 JBrowse link
G PDZD7 PDZ domain containing 7 involved_in
acts_upstream_of_or_within		 IEA
ISO
IBA		 (PMID:24334608) TreeGrafter
MGI
GO_Central		 PMID:24334608 GO_REF:0000033 GO_REF:0000118 NCBI chr14:112,088,332...112,111,348 JBrowse link
G PLS1 plastin 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr13:83,307,692...83,434,133
Ensembl chr13:83,308,007...83,434,128 		JBrowse link
G REST RE1 silencing transcription factor involved_in ISO (MGI:6193260|PMID:29961578) UniProt PMID:29961578 MGI:6193260 NCBI chr 8:56,035,182...56,061,140
Ensembl chr 8:56,035,150...56,215,013 		JBrowse link
G RIPOR2 RHO family interacting cell polarization regulator 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 7:19,609,358...19,842,345
Ensembl chr 7:19,609,358...19,838,093 		JBrowse link
G SCRIB scribble planar cell polarity protein involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:20215345) Ensembl
MGI		 PMID:20215345 GO_REF:0000107 NCBI chr 4:824,925...852,360
Ensembl chr 4:825,062...852,664 		JBrowse link
G SEC24B SEC24 homolog B, COPII coat complex component involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:20215345) Ensembl
MGI		 PMID:20215345 GO_REF:0000107 NCBI chr 8:112,670,529...112,762,870
Ensembl chr 8:112,670,533...112,762,858 		JBrowse link
G SOD1 superoxide dismutase 1 involved_in
acts_upstream_of_or_within		 ISS
ISO
IEA		 (PMID:10464373), (PMID:10466888) UniProt
MGI
Ensembl		 PMID:10464373 PMID:10466888 GO_REF:0000024 GO_REF:0000107 NCBI chr13:195,326,573...195,335,273
Ensembl chr13:195,326,649...195,337,729 		JBrowse link
G STRC stereocilin involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:30801007)
(PMID:18849963)		 Ensembl
MGI		 PMID:18849963 PMID:30801007 GO_REF:0000107 NCBI chr 1:127,830,759...127,852,392
Ensembl chr 1:127,835,622...127,852,339 		JBrowse link
G TECTA tectorin alpha involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:30801007) Ensembl
MGI		 PMID:30801007 GO_REF:0000107 NCBI chr 9:48,120,786...48,286,275
Ensembl chr 9:48,211,798...48,286,274
Ensembl chr 9:48,211,798...48,286,274 		JBrowse link
G TPRN taperin involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:30380417) TreeGrafter
MGI		 PMID:30380417 GO_REF:0000118
G TRIOBP TRIO and F-actin binding protein acts_upstream_of_or_within ISO (PMID:20510926) MGI PMID:20510926 NCBI chr 5:10,066,080...10,132,668
Ensembl chr 5:10,066,086...10,126,491 		JBrowse link
G WHRN whirlin involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:27117407) Ensembl
MGI
TreeGrafter		 PMID:27117407 GO_REF:0000107 GO_REF:0000118 NCBI chr 1:255,009,765...255,095,281
Ensembl chr 1:255,009,771...255,095,222 		JBrowse link
cochlea morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CTHRC1 collagen triple helix repeat containing 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:18606138) Ensembl
MGI		 PMID:18606138 GO_REF:0000107 NCBI chr 4:33,759,541...33,771,625
Ensembl chr 4:33,759,542...33,771,582 		JBrowse link
G DVL1 dishevelled segment polarity protein 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:16116426) Ensembl
MGI		 PMID:16116426 GO_REF:0000107 NCBI chr 6:63,617,787...63,628,965
Ensembl chr 6:63,617,789...63,628,913 		JBrowse link
G DVL2 dishevelled segment polarity protein 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:16116426)
(PMID:19008950)		 Ensembl
MGI		 PMID:16116426 PMID:19008950 GO_REF:0000107 NCBI chr12:52,581,687...52,590,266
Ensembl chr12:52,581,688...52,590,285 		JBrowse link
G DVL3 dishevelled segment polarity protein 3 acts_upstream_of_or_within ISO (PMID:19008950) MGI PMID:19008950 NCBI chr13:122,075,851...122,092,975
Ensembl chr13:122,076,003...122,092,971 		JBrowse link
G EYA1 EYA transcriptional coactivator and phosphatase 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:10072433) Ensembl
MGI		 PMID:10072433 GO_REF:0000107 NCBI chr 4:63,970,939...64,328,107
Ensembl chr 4:63,970,807...64,328,105 		JBrowse link
G FRZB frizzled related protein involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:17433286) Ensembl
MGI		 PMID:17433286 GO_REF:0000107 NCBI chr15:88,332,856...88,377,275
Ensembl chr15:88,332,860...88,377,247 		JBrowse link
G FZD2 frizzled class receptor 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:20940229) Ensembl
MGI		 PMID:20940229 GO_REF:0000107 NCBI chr12:18,740,417...18,742,301
Ensembl chr12:18,740,653...18,742,420 		JBrowse link
G GLI2 GLI family zinc finger 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:17395647) Ensembl
MGI		 PMID:17395647 GO_REF:0000107 NCBI chr15:30,312,528...30,580,272
Ensembl chr15:30,313,817...30,579,306 		JBrowse link
G GRHL3 grainyhead like transcription factor 3 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:20643356) Ensembl
MGI		 PMID:20643356 GO_REF:0000107 NCBI chr 6:82,014,022...82,050,240
Ensembl chr 6:82,013,969...82,050,236 		JBrowse link
G HOXA1 homeobox A1 involved_in ISO (PMID:16155570) DFLAT PMID:16155570 NCBI chr18:45,477,561...45,480,306
Ensembl chr18:45,477,461...45,480,152 		JBrowse link
G HPN hepsin involved_in ISO (MGI:5306554|PMID:20683358) UniProt PMID:20683358 MGI:5306554 NCBI chr 6:44,608,076...44,628,044
Ensembl chr 6:44,608,071...44,628,049 		JBrowse link
G MYO3A myosin IIIA involved_in ISO (MGI:5766107|PMID:26754646) UniProt PMID:26754646 MGI:5766107 NCBI chr10:49,392,119...49,623,575 JBrowse link
G MYO3B myosin IIIB involved_in ISO (MGI:5766107|PMID:26754646) UniProt PMID:26754646 MGI:5766107 NCBI chr15:76,432,429...76,855,443
Ensembl chr15:76,401,963...76,855,429 		JBrowse link
G NEUROG1 neurogenin 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 2:137,763,091...137,766,787
Ensembl chr 2:137,765,942...137,766,682 		JBrowse link
G PAX2 paired box 2 involved_in
acts_upstream_of_or_within		 ISO (MGI:84247|PMID:8951055)
(PMID:16916509)
(MGI:4822275|PMID:20727173)		 DFLAT
MGI
UniProt		 PMID:8951055 PMID:16916509 PMID:20727173 MGI:4822275 MGI:84247 NCBI chr14:111,822,334...111,914,950
Ensembl chr14:111,823,308...111,913,969 		JBrowse link
G POU3F4 POU class 3 homeobox 4 involved_in IEA Ensembl GO_REF:0000107 NCBI chr  X:66,765,044...66,766,642
Ensembl chr  X:66,765,105...66,766,190 		JBrowse link
G PTK7 protein tyrosine kinase 7 (inactive) involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:20704721) Ensembl
MGI		 PMID:20704721 GO_REF:0000107 NCBI chr 7:38,135,675...38,205,662
Ensembl chr 7:38,135,655...38,205,655 		JBrowse link
G RAC1 Rac family small GTPase 1 acts_upstream_of_or_within ISO (PMID:20016102) MGI PMID:20016102 NCBI chr 3:4,781,776...4,803,510
Ensembl chr 3:4,781,780...4,803,543 		JBrowse link
G SIX1 SIX homeobox 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:12874121) Ensembl
MGI		 PMID:12874121 GO_REF:0000107 NCBI chr 1:189,620,430...189,624,652
Ensembl chr 1:189,619,855...189,624,651 		JBrowse link
G SOX9 SRY-box transcription factor 9 involved_in
acts_upstream_of_or_within		 IEA
ISO
ISS		 (PMID:20346939) Ensembl
MGI
UniProt		 PMID:20346939 GO_REF:0000024 GO_REF:0000107 NCBI chr12:8,642,154...8,647,315
Ensembl chr12:8,642,158...8,647,315 		JBrowse link
G TBX1 T-box transcription factor 1 involved_in
acts_upstream_of_or_within		 ISO (MGI:5284768|PMID:18231833)
(PMID:17825816)		 UniProt
MGI		 PMID:17825816 PMID:18231833 MGI:5284768 NCBI chr14:51,289,376...51,297,110
Ensembl chr14:51,289,321...51,296,725 		JBrowse link
G TBX18 T-box transcription factor 18 acts_upstream_of_or_within ISO (PMID:18353863) MGI PMID:18353863 NCBI chr 1:53,836,939...53,867,460
Ensembl chr 1:53,838,189...53,867,254 		JBrowse link
G TBX2 T-box transcription factor 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr12:36,878,662...36,887,513
Ensembl chr12:36,878,675...36,887,513 		JBrowse link
G TIFAB TIFA inhibitor involved_in IEA Ensembl GO_REF:0000107 NCBI chr 2:137,675,245...137,678,880
Ensembl chr 2:137,672,407...137,678,612 		JBrowse link
G TSHR thyroid stimulating hormone receptor involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:10575115) Ensembl
MGI		 PMID:10575115 GO_REF:0000107 NCBI chr 7:103,768,260...103,925,777
Ensembl chr 7:103,768,296...103,925,922 		JBrowse link
G VANGL2 VANGL planar cell polarity protein 2 acts_upstream_of_or_within ISO (PMID:20643356)
(PMID:20940229)
(PMID:16116426), (PMID:18606138)
(PMID:19008950)
(PMID:17433286)		 MGI PMID:16116426 PMID:17433286 PMID:18606138 PMID:19008950 PMID:20643356 More... NCBI chr 4:90,051,994...90,080,701
Ensembl chr 4:90,051,277...90,080,635 		JBrowse link
G WNT5A Wnt family member 5A involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:17433286) Ensembl
MGI		 PMID:17433286 GO_REF:0000107 NCBI chr13:37,344,684...37,367,215
Ensembl chr13:37,344,699...37,367,207 		JBrowse link
G ZEB1 zinc finger E-box binding homeobox 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:21980308) Ensembl
MGI		 PMID:21980308 GO_REF:0000107 NCBI chr10:42,013,114...42,216,139
Ensembl chr10:42,013,084...42,214,205 		JBrowse link
inner ear morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ABR ABR activator of RhoGEF and GTPase acts_upstream_of_or_within ISO (PMID:11921339) MGI PMID:11921339 NCBI chr12:46,709,840...46,895,819
Ensembl chr12:46,709,880...46,895,808 		JBrowse link
G ALDH1A3 aldehyde dehydrogenase 1 family member A3 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:23536097) Ensembl
MGI		 PMID:23536097 GO_REF:0000107 NCBI chr 1:139,451,080...139,491,514
Ensembl chr 1:139,451,049...139,491,511 		JBrowse link
G ATOH1 atonal bHLH transcription factor 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:16145671)
(PMID:15543141)		 Ensembl
MGI		 PMID:15543141 PMID:16145671 GO_REF:0000107 NCBI chr 8:125,768,232...125,770,619
Ensembl chr 8:125,768,286...125,770,545 		JBrowse link
G ATP2B2 ATPase plasma membrane Ca2+ transporting 2 acts_upstream_of_or_within ISO (PMID:9668038) MGI PMID:9668038 NCBI chr13:66,526,508...66,897,125
Ensembl chr13:66,528,323...66,897,128 		JBrowse link
G ATP6V1B1 ATPase H+ transporting V1 subunit B1 NOT|involved_in ISO
IEA		 (MGI:2669353|PMID:12782355) UniProt
Ensembl		 PMID:12782355 GO_REF:0000107 MGI:2669353 NCBI chr 3:71,560,102...71,591,885
Ensembl chr 3:71,561,236...71,591,845 		JBrowse link
G BCR BCR activator of RhoGEF and GTPase involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:11921339) Ensembl
MGI		 PMID:11921339 GO_REF:0000107 NCBI chr14:49,208,662...49,322,109
Ensembl chr14:49,208,762...49,322,103 		JBrowse link
G CDH23 cadherin related 23 acts_upstream_of_or_within ISO (PMID:15925194)
(PMID:7610888)		 MGI PMID:7610888 PMID:15925194 MGI:61210 NCBI chr14:74,267,547...74,734,623
Ensembl chr14:74,223,089...74,733,834 		JBrowse link
G CHD7 chromodomain helicase DNA binding protein 7 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:15353999) Ensembl
MGI		 PMID:15353999 GO_REF:0000107 NCBI chr 4:72,572,455...72,754,443
Ensembl chr 4:72,573,453...72,694,146 		JBrowse link
G CHRNA10 cholinergic receptor nicotinic alpha 10 subunit involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:18077337) Ensembl
MGI		 PMID:18077337 GO_REF:0000107 NCBI chr 9:6,427,832...6,431,881
Ensembl chr 9:6,427,191...6,432,875 		JBrowse link
G CHRNA9 cholinergic receptor nicotinic alpha 9 subunit involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:18077337) Ensembl
MGI		 PMID:18077337 GO_REF:0000107 NCBI chr 8:31,430,933...31,456,385
Ensembl chr 8:31,443,043...31,456,384 		JBrowse link
G COL11A1 collagen type XI alpha 1 chain involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:1952599) Ensembl
MGI		 PMID:1952599 GO_REF:0000107 NCBI chr 4:115,638,381...115,841,679
Ensembl chr 4:115,634,172...115,840,708 		JBrowse link
G COL2A1 collagen type II alpha 1 chain involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:9165353) Ensembl
MGI		 PMID:9165353 GO_REF:0000107 NCBI chr 5:78,350,131...78,380,893
Ensembl chr 5:78,350,137...78,380,718 		JBrowse link
G DLX5 distal-less homeobox 5 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:16900517)
(PMID:12142028)		 Ensembl
MGI		 PMID:12142028 PMID:16900517 GO_REF:0000107 NCBI chr 9:76,639,915...76,643,689
Ensembl chr 9:76,639,561...76,643,884 		JBrowse link
G DLX6 distal-less homeobox 6 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:16900517) Ensembl
MGI		 PMID:16900517 GO_REF:0000107 NCBI chr 9:76,623,489...76,630,296
Ensembl chr 9:76,625,117...76,630,275 		JBrowse link
G EPHB2 EPH receptor B2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 6:80,649,098...80,849,979
Ensembl chr 6:80,650,740...80,843,567 		JBrowse link
G EYA1 EYA transcriptional coactivator and phosphatase 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:15817220)
(PMID:10471511)
(PMID:16916509)		 Ensembl
MGI		 PMID:10471511 PMID:15817220 PMID:16916509 GO_REF:0000107 NCBI chr 4:63,970,939...64,328,107
Ensembl chr 4:63,970,807...64,328,105 		JBrowse link
G FGF10 fibroblast growth factor 10 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:11062007)
(PMID:16691564)		 Ensembl
MGI		 PMID:11062007 PMID:16691564 GO_REF:0000107 NCBI chr16:28,695,465...28,779,953
Ensembl chr16:28,695,470...28,777,509 		JBrowse link
G FGF8 fibroblast growth factor 8 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:15809037) Ensembl
MGI		 PMID:15809037 GO_REF:0000107 NCBI chr14:112,808,215...112,814,225
Ensembl chr14:112,808,162...112,814,248 		JBrowse link
G FGF9 fibroblast growth factor 9 acts_upstream_of_or_within ISO (PMID:15328018) MGI PMID:15328018 NCBI chr11:1,554,648...1,581,938
Ensembl chr11:1,554,763...1,582,408 		JBrowse link
G FGFR1 fibroblast growth factor receptor 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:12194867) Ensembl
MGI		 PMID:12194867 GO_REF:0000107 NCBI chr15:48,053,895...48,106,634
Ensembl chr15:48,053,340...48,106,724 		JBrowse link
G FGFR2 fibroblast growth factor receptor 2 involved_in
acts_upstream_of_or_within		 ISS
ISO		 (PMID:10934262) UniProt
MGI		 PMID:10934262 GO_REF:0000024 NCBI chr14:131,183,095...131,285,001
Ensembl chr14:131,181,713...131,289,425 		JBrowse link
G FOXG1 forkhead box G1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:16691564) Ensembl
MGI		 PMID:16691564 GO_REF:0000107 NCBI chr 7:70,656,603...70,660,236
Ensembl chr 7:70,658,685...70,660,145 		JBrowse link
G FOXI1 forkhead box I1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:12642503) Ensembl
MGI		 PMID:12642503 GO_REF:0000107 NCBI chr16:53,835,350...53,839,185
Ensembl chr16:53,835,399...53,839,187 		JBrowse link
G FRZB frizzled related protein involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:18991062) Ensembl
MGI		 PMID:18991062 GO_REF:0000107 NCBI chr15:88,332,856...88,377,275
Ensembl chr15:88,332,860...88,377,247 		JBrowse link
G FZD3 frizzled class receptor 3 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:16495441) Ensembl
MGI		 PMID:16495441 GO_REF:0000107 NCBI chr14:12,281,127...12,394,768
Ensembl chr14:12,281,155...12,390,530 		JBrowse link
G FZD6 frizzled class receptor 6 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:16495441) Ensembl
MGI		 PMID:16495441 GO_REF:0000107 NCBI chr 4:33,811,159...33,844,556
Ensembl chr 4:33,809,809...33,844,656 		JBrowse link
G GATA2 GATA binding protein 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:20652952) Ensembl
MGI		 PMID:20652952 GO_REF:0000107 NCBI chr13:71,981,139...71,997,626
Ensembl chr13:71,984,067...71,997,619 		JBrowse link
G GATA3 GATA binding protein 3 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:11135239)
(PMID:21553382)		 Ensembl
MGI		 PMID:11135239 PMID:21553382 GO_REF:0000107 NCBI chr10:63,367,684...63,397,977
Ensembl chr10:63,367,663...63,388,859 		JBrowse link
G GBX2 gastrulation brain homeobox 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:15829521), (PMID:15996652) Ensembl
MGI		 PMID:15829521 PMID:15996652 GO_REF:0000107 NCBI chr15:136,029,393...136,032,568
Ensembl chr15:136,029,070...136,032,316 		JBrowse link
G GFI1 growth factor independent 1 transcriptional repressor acts_upstream_of_or_within ISO (PMID:12441305) MGI PMID:12441305 NCBI chr 4:124,619,887...124,629,638
Ensembl chr 4:124,621,261...124,629,638 		JBrowse link
G HMX2 H6 family homeobox 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:11748138)
(PMID:15363417)		 Ensembl
MGI		 PMID:11748138 PMID:15363417 GO_REF:0000107 NCBI chr14:132,691,108...132,699,477
Ensembl chr14:132,696,380...132,699,544 		JBrowse link
G HMX3 H6 family homeobox 3 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:15363417)
(PMID:9435283)		 Ensembl
MGI		 PMID:9435283 PMID:15363417 GO_REF:0000107 NCBI chr14:132,684,994...132,687,485
Ensembl chr14:132,684,865...132,687,761 		JBrowse link
G HOXA1 homeobox A1 acts_upstream_of_or_within ISO (PMID:15367676) MGI PMID:15367676 NCBI chr18:45,477,561...45,480,306
Ensembl chr18:45,477,461...45,480,152 		JBrowse link
G INSIG1 insulin induced gene 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:16955138) Ensembl
MGI		 PMID:16955138 GO_REF:0000107 NCBI chr18:2,885,494...2,898,758
Ensembl chr18:2,885,612...2,898,767 		JBrowse link
G INSIG2 insulin induced gene 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:16955138) Ensembl
MGI		 PMID:16955138 GO_REF:0000107 NCBI chr15:23,676,684...23,699,591
Ensembl chr15:23,676,683...23,699,582 		JBrowse link
G ITGA8 integrin subunit alpha 8 acts_upstream_of_or_within ISO (PMID:10742111) MGI PMID:10742111 NCBI chr10:46,132,887...46,303,659
Ensembl chr10:46,132,913...46,303,343 		JBrowse link
G KCNQ1 potassium voltage-gated channel subfamily Q member 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 2:1,675,323...1,989,110
Ensembl chr 2:1,675,360...1,989,111 		JBrowse link
G KCNQ4 potassium voltage-gated channel subfamily Q member 4 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:16437162) Ensembl
MGI		 PMID:16437162 GO_REF:0000107 NCBI chr 6:170,346,135...170,401,534
Ensembl chr 6:170,346,141...170,401,718 		JBrowse link
G LOC100523747 phospholipid-transporting ATPase IB involved_in IEA Ensembl GO_REF:0000107 NCBI chr11:3,277,395...3,793,881
Ensembl chr11:3,277,951...3,793,881 		JBrowse link
G LOC102159820 cadherin EGF LAG seven-pass G-type receptor 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:12842012) Ensembl
MGI		 PMID:12842012 GO_REF:0000107 NCBI chr 5:3,114,410...3,203,378
Ensembl chr 5:2,980,351...3,203,381 		JBrowse link
G MAFB MAF bZIP transcription factor B involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:16325169) Ensembl
MGI		 PMID:16325169 GO_REF:0000107 NCBI chr17:43,408,390...43,411,782
Ensembl chr17:43,404,927...43,411,739 		JBrowse link
G MYO15A myosin XVA acts_upstream_of_or_within ISO (PMID:11718241), (PMID:14724386) MGI PMID:11718241 PMID:14724386 NCBI chr12:60,533,502...60,582,645 JBrowse link
G MYO6 myosin VI involved_in
acts_upstream_of_or_within		 IBA
ISO
IEA		 (PMID:7493015) GO_Central
MGI
TreeGrafter		 PMID:7493015 GO_REF:0000033 GO_REF:0000118 NCBI chr 1:89,992,860...90,137,767
Ensembl chr 1:89,992,866...90,137,734 		JBrowse link
G MYO7A myosin VIIA involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:5795329)
(PMID:15389316)
(PMID:11753415)		 Ensembl
MGI		 PMID:5795329 PMID:11753415 PMID:15389316 GO_REF:0000107 NCBI chr 9:11,251,187...11,337,618
Ensembl chr 9:11,249,075...11,666,296 		JBrowse link
G NEUROG1 neurogenin 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:16145671) Ensembl
MGI		 PMID:16145671 GO_REF:0000107 NCBI chr 2:137,763,091...137,766,787
Ensembl chr 2:137,765,942...137,766,682 		JBrowse link
G NR4A3 nuclear receptor subfamily 4 group A member 3 acts_upstream_of_or_within ISO (PMID:11784868) MGI PMID:11784868 NCBI chr 1:241,569,867...241,611,735
Ensembl chr 1:241,570,010...241,611,727 		JBrowse link
G NTN1 netrin 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:17616930) Ensembl
MGI		 PMID:17616930 GO_REF:0000107 NCBI chr12:54,089,444...54,292,191
Ensembl chr12:54,089,472...54,292,193 		JBrowse link
G OTOP1 otopetrin 1 involved_in
acts_upstream_of_or_within		 IEA
ISO
IBA		 (PMID:12651873) Ensembl
MGI
TreeGrafter
GO_Central		 PMID:12651873 GO_REF:0000033 GO_REF:0000107 GO_REF:0000118 NCBI chr 8:6,127,837...6,164,421
Ensembl chr 8:6,127,965...6,163,061 		JBrowse link
G OTX1 orthodenticle homeobox 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:10225993) Ensembl
MGI		 PMID:10225993 GO_REF:0000107 NCBI chr 3:78,895,142...78,903,045
Ensembl chr 3:78,896,675...78,903,122 		JBrowse link
G OTX2 orthodenticle homeobox 2 acts_upstream_of_or_within ISO (PMID:10225993) MGI PMID:10225993 NCBI chr 1:186,028,575...186,039,026
Ensembl chr 1:186,028,579...186,038,229 		JBrowse link
G PAX2 paired box 2 involved_in
acts_upstream_of_or_within		 ISO (MGI:4822275|PMID:20727173)
(PMID:15242798)
(PMID:16916509)
(MGI:84247|PMID:8951055)		 UniProt
MGI
DFLAT		 PMID:8951055 PMID:15242798 PMID:16916509 PMID:20727173 MGI:4822275 MGI:84247 NCBI chr14:111,822,334...111,914,950
Ensembl chr14:111,823,308...111,913,969 		JBrowse link
G POU4F3 POU class 4 homeobox 3 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:12585968) Ensembl
MGI		 PMID:12585968 GO_REF:0000107 NCBI chr 2:147,693,013...147,694,345
Ensembl chr 2:147,692,751...147,695,346 		JBrowse link
G PRRX1 paired related homeobox 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:9729491) Ensembl
MGI		 PMID:9729491 GO_REF:0000107 NCBI chr 4:80,427,682...80,502,689
Ensembl chr 4:80,427,687...80,501,646 		JBrowse link
G PRRX2 paired related homeobox 2 acts_upstream_of_or_within ISO (PMID:9729491) MGI PMID:9729491 NCBI chr 1:269,853,134...269,902,808
Ensembl chr 1:269,853,200...269,903,469 		JBrowse link
G PTPRQ protein tyrosine phosphatase receptor type Q involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:14534255) Ensembl
MGI		 PMID:14534255 GO_REF:0000107 NCBI chr 5:100,787,025...101,081,145
Ensembl chr 5:100,787,027...101,033,334 		JBrowse link
G ROR2 receptor tyrosine kinase like orphan receptor 2 acts_upstream_of_or_within ISO (PMID:18606138) MGI PMID:18606138 NCBI chr14:2,803,840...3,035,384
Ensembl chr14:2,804,061...3,035,296 		JBrowse link
G SIX1 SIX homeobox 1 involved_in
acts_upstream_of_or_within		 IEA
ISO
ISS		 (PMID:15788460) Ensembl
MGI
UniProt		 PMID:15788460 GO_REF:0000024 GO_REF:0000107 NCBI chr 1:189,620,430...189,624,652
Ensembl chr 1:189,619,855...189,624,651 		JBrowse link
G SIX4 SIX homeobox 4 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:15788460) Ensembl
MGI		 PMID:15788460 GO_REF:0000107 NCBI chr 1:189,670,390...189,682,378
Ensembl chr 1:189,670,390...189,682,577 		JBrowse link
G SLITRK6 SLIT and NTRK like family member 6 acts_upstream_of_or_within ISO (PMID:19936227) MGI PMID:19936227 NCBI chr11:56,508,713...56,522,270
Ensembl chr11:56,508,767...56,522,197 		JBrowse link
G SOBP sine oculis binding protein homolog involved_in
acts_upstream_of_or_within		 IEA
ISO
IBA		 (PMID:16962269) Ensembl
MGI
GO_Central
TreeGrafter		 PMID:16962269 GO_REF:0000033 GO_REF:0000107 GO_REF:0000118 NCBI chr 1:73,549,778...73,722,689
Ensembl chr 1:73,549,307...73,702,020 		JBrowse link
G SOX2 SRY-box transcription factor 2 acts_upstream_of_or_within ISO (PMID:15846349) MGI PMID:15846349 NCBI chr13:119,668,476...119,669,435
Ensembl chr13:119,668,476...119,669,435 		JBrowse link
G SPRY2 sprouty RTK signaling antagonist 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:15809037) Ensembl
MGI		 PMID:15809037 GO_REF:0000107 NCBI chr11:52,153,695...52,158,766
Ensembl chr11:52,153,704...52,159,156 		JBrowse link
G TBX1 T-box transcription factor 1 acts_upstream_of_or_within ISO (PMID:16600992)
(PMID:15084464)
(PMID:15652707)
(PMID:12913075)		 MGI PMID:12913075 PMID:15084464 PMID:15652707 PMID:16600992 NCBI chr14:51,289,376...51,297,110
Ensembl chr14:51,289,321...51,296,725 		JBrowse link
G TBX3 T-box transcription factor 3 involved_in IEA Ensembl GO_REF:0000107 NCBI chr14:37,582,704...37,596,767
Ensembl chr14:37,582,822...37,596,766 		JBrowse link
G TFAP2A transcription factor AP-2 alpha involved_in ISS UniProt GO_REF:0000024 NCBI chr 7:7,221,654...7,244,626
Ensembl chr 7:7,221,656...7,244,612 		JBrowse link
G TIFAB TIFA inhibitor involved_in IEA Ensembl GO_REF:0000107 NCBI chr 2:137,675,245...137,678,880
Ensembl chr 2:137,672,407...137,678,612 		JBrowse link
G TMIE transmembrane inner ear involved_in
acts_upstream_of_or_within		 IEA
ISO
IBA		 (PMID:12140191) Ensembl
MGI
GO_Central		 PMID:12140191 GO_REF:0000033 GO_REF:0000107 NCBI chr13:29,623,905...29,633,016
Ensembl chr13:29,624,154...29,633,013 		JBrowse link
G USH1C USH1 protein network component harmonin involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:14519688) TreeGrafter
MGI		 PMID:14519688 GO_REF:0000118 NCBI chr 2:41,593,793...41,646,777
Ensembl chr 2:41,593,802...41,647,247 		JBrowse link
G USH1G USH1 protein network component sans involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:12588793), (PMID:1927362) Ensembl
MGI		 PMID:1927362 PMID:12588793 GO_REF:0000107 NCBI chr12:6,333,640...6,341,083
Ensembl chr12:6,334,310...6,340,361 		JBrowse link
G WNT1 Wnt family member 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:15961523) Ensembl
MGI		 PMID:15961523 GO_REF:0000107 NCBI chr 5:15,010,607...15,015,007
Ensembl chr 5:15,010,786...15,014,998 		JBrowse link
G WNT3A Wnt family member 3A involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:15961523) Ensembl
MGI		 PMID:15961523 GO_REF:0000107 NCBI chr 2:51,153,978...51,203,678
Ensembl chr 2:51,153,970...51,202,176 		JBrowse link
G WNT5A Wnt family member 5A involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:18991062) Ensembl
MGI		 PMID:18991062 GO_REF:0000107 NCBI chr13:37,344,684...37,367,215
Ensembl chr13:37,344,699...37,367,207 		JBrowse link
middle ear morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G EDN1 endothelin 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:8152482) Ensembl
MGI		 PMID:8152482 GO_REF:0000107 NCBI chr 7:8,752,018...8,758,354
Ensembl chr 7:8,751,695...8,758,348 		JBrowse link
G EDNRA endothelin receptor type A involved_in IEA Ensembl GO_REF:0000107 NCBI chr 8:81,210,750...81,279,053
Ensembl chr 8:81,209,327...81,276,853 		JBrowse link
G ENPP1 ectonucleotide pyrophosphatase/phosphodiesterase 1 involved_in ISO (PMID:27959908) MGI PMID:27959908 NCBI chr 1:31,724,290...31,796,594
Ensembl chr 1:31,722,721...31,796,595 		JBrowse link
G EYA1 EYA transcriptional coactivator and phosphatase 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:10471511) Ensembl
MGI		 PMID:10471511 GO_REF:0000107 NCBI chr 4:63,970,939...64,328,107
Ensembl chr 4:63,970,807...64,328,105 		JBrowse link
G EYA4 EYA transcriptional coactivator and phosphatase 4 acts_upstream_of_or_within ISO (PMID:18219393) MGI PMID:18219393 NCBI chr 1:30,260,784...30,575,593
Ensembl chr 1:30,261,917...30,533,604 		JBrowse link
G FGFR1 fibroblast growth factor receptor 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:15630379) Ensembl
MGI		 PMID:15630379 GO_REF:0000107 NCBI chr15:48,053,895...48,106,634
Ensembl chr15:48,053,340...48,106,724 		JBrowse link
G GAS1 growth arrest specific 1 acts_upstream_of_or_within ISO (PMID:17525797) MGI PMID:17525797 NCBI chr10:28,509,168...28,511,554
Ensembl chr10:28,509,261...28,510,301 		JBrowse link
G GSC goosecoid homeobox involved_in IEA Ensembl GO_REF:0000107 NCBI chr 7:116,099,053...116,101,153
Ensembl chr 7:116,098,327...116,101,338 		JBrowse link
G HOXA2 homeobox A2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:16221728)
(PMID:15634706)
(PMID:15861402)		 Ensembl
MGI		 PMID:15634706 PMID:15861402 PMID:16221728 GO_REF:0000107 NCBI chr18:45,470,079...45,473,345
Ensembl chr18:45,470,862...45,473,876 		JBrowse link
G INSIG1 insulin induced gene 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:16955138) Ensembl
MGI		 PMID:16955138 GO_REF:0000107 NCBI chr18:2,885,494...2,898,758
Ensembl chr18:2,885,612...2,898,767 		JBrowse link
G INSIG2 insulin induced gene 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:16955138) Ensembl
MGI		 PMID:16955138 GO_REF:0000107 NCBI chr15:23,676,684...23,699,591
Ensembl chr15:23,676,683...23,699,582 		JBrowse link
G MSX1 msh homeobox 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:16330189) Ensembl
MGI		 PMID:16330189 GO_REF:0000107 NCBI chr 8:5,628,381...5,632,375
Ensembl chr 8:5,628,380...5,632,607 		JBrowse link
G MYC MYC proto-oncogene, bHLH transcription factor acts_upstream_of_or_within ISO (PMID:17523175) MGI PMID:17523175 NCBI chr 4:12,455,141...12,460,360
Ensembl chr 4:12,455,122...12,461,078 		JBrowse link
G NAGLU N-acetyl-alpha-glucosaminidase involved_in IEA Ensembl GO_REF:0000107 Ensembl chr12:20,271,351...20,279,777 JBrowse link
G NKX3-2 NK3 homeobox 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:14973294) Ensembl
MGI		 PMID:14973294 GO_REF:0000107 NCBI chr 8:9,179,061...9,183,340
Ensembl chr 8:9,179,232...9,182,892 		JBrowse link
G NOG noggin involved_in IEA Ensembl GO_REF:0000107 NCBI chr12:32,891,321...32,892,206
Ensembl chr12:32,891,321...32,892,206 		JBrowse link
G OSR1 odd-skipped related transcription factor 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 3:118,368,471...118,765,107
Ensembl chr 3:118,757,920...118,765,102 		JBrowse link
G OSR2 odd-skipped related transciption factor 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 4:37,890,200...37,897,935
Ensembl chr 4:37,890,203...37,897,929 		JBrowse link
G PRKRA protein activator of interferon induced protein kinase EIF2AK2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:16571658) Ensembl
MGI		 PMID:16571658 GO_REF:0000107 NCBI chr15:84,134,273...84,156,596
Ensembl chr15:84,133,687...84,156,508 		JBrowse link
G PRRX1 paired related homeobox 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:9729491)
(PMID:7758948)		 Ensembl
MGI		 PMID:7758948 PMID:9729491 GO_REF:0000107 NCBI chr 4:80,427,682...80,502,689
Ensembl chr 4:80,427,687...80,501,646 		JBrowse link
G PRRX2 paired related homeobox 2 acts_upstream_of_or_within ISO (PMID:9729491) MGI PMID:9729491 NCBI chr 1:269,853,134...269,902,808
Ensembl chr 1:269,853,200...269,903,469 		JBrowse link
G RPL38 ribosomal protein L38 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:21062742) Ensembl
MGI		 PMID:21062742 GO_REF:0000107 NCBI chr12:6,884,899...6,889,966
Ensembl chr12:6,884,902...6,898,764 		JBrowse link
G SIX1 SIX homeobox 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:12874121) Ensembl
MGI		 PMID:12874121 GO_REF:0000107 NCBI chr 1:189,620,430...189,624,652
Ensembl chr 1:189,619,855...189,624,651 		JBrowse link
G SIX2 SIX homeobox 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:15634706) Ensembl
MGI		 PMID:15634706 GO_REF:0000107 NCBI chr 3:95,460,046...95,463,428
Ensembl chr 3:95,459,945...95,463,251 		JBrowse link
G TBX1 T-box transcription factor 1 acts_upstream_of_or_within ISO (PMID:16600992)
(PMID:20501333)
(PMID:15652707)		 MGI PMID:15652707 PMID:16600992 PMID:20501333 NCBI chr14:51,289,376...51,297,110
Ensembl chr14:51,289,321...51,296,725 		JBrowse link
G TSHZ1 teashirt zinc finger homeobox 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:17586487) Ensembl
MGI		 PMID:17586487 GO_REF:0000107 NCBI chr 1:148,905,179...148,984,984
Ensembl chr 1:148,906,075...148,984,832 		JBrowse link
otic vesicle formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G FGF10 fibroblast growth factor 10 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:14623822) Ensembl
MGI		 PMID:14623822 GO_REF:0000107 NCBI chr16:28,695,465...28,779,953
Ensembl chr16:28,695,470...28,777,509 		JBrowse link
G FGF3 fibroblast growth factor 3 acts_upstream_of_or_within ISO (PMID:17601531) MGI PMID:17601531 NCBI chr 2:3,489,208...3,496,532
Ensembl chr 2:3,489,009...3,497,533 		JBrowse link
G FGF8 fibroblast growth factor 8 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:17601531) Ensembl
MGI		 PMID:17601531 GO_REF:0000107 NCBI chr14:112,808,215...112,814,225
Ensembl chr14:112,808,162...112,814,248 		JBrowse link
G FGFR2 fibroblast growth factor receptor 2 involved_in
acts_upstream_of_or_within		 ISS
ISO		 (PMID:9435295) UniProt
MGI		 PMID:9435295 GO_REF:0000024 NCBI chr14:131,183,095...131,285,001
Ensembl chr14:131,181,713...131,289,425 		JBrowse link
G HESX1 HESX homeobox 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:9620767) Ensembl
MGI		 PMID:9620767 GO_REF:0000107 NCBI chr13:39,046,961...39,088,926
Ensembl chr13:39,046,465...39,088,875 		JBrowse link
G SOX9 SRY-box transcription factor 9 involved_in
acts_upstream_of_or_within		 IEA
ISO
ISS		 (PMID:18377888) Ensembl
MGI
UniProt		 PMID:18377888 GO_REF:0000024 GO_REF:0000107 NCBI chr12:8,642,154...8,647,315
Ensembl chr12:8,642,158...8,647,315 		JBrowse link
G TCAP titin-cap involved_in IEA Ensembl GO_REF:0000107 NCBI chr12:22,651,666...22,652,904
Ensembl chr12:22,651,664...22,653,722 		JBrowse link
otic vesicle morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G EYA1 EYA transcriptional coactivator and phosphatase 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:16916509) Ensembl
MGI		 PMID:16916509 GO_REF:0000107 NCBI chr 4:63,970,939...64,328,107
Ensembl chr 4:63,970,807...64,328,105 		JBrowse link
G TBX1 T-box transcription factor 1 acts_upstream_of_or_within ISO (PMID:17074316) MGI PMID:17074316 NCBI chr14:51,289,376...51,297,110
Ensembl chr14:51,289,321...51,296,725 		JBrowse link
otolith formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G SLC44A4 solute carrier family 44 member 4 involved_in ISS UniProt GO_REF:0000024 NCBI chr 7:23,958,935...23,977,466
Ensembl chr 7:23,958,942...23,977,482 		JBrowse link
otolith morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G BLOC1S5 biogenesis of lysosomal organelles complex 1 subunit 5 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:5367369) Ensembl
MGI		 PMID:5367369 GO_REF:0000107 NCBI chr 7:5,324,467...5,363,346
Ensembl chr 7:5,321,655...5,363,538 		JBrowse link
G LRIG1 leucine rich repeats and immunoglobulin like domains 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:24086156) Ensembl
MGI		 PMID:24086156 GO_REF:0000107 NCBI chr13:47,909,002...48,027,396
Ensembl chr13:47,909,011...48,027,384 		JBrowse link
G LRIG3 leucine rich repeats and immunoglobulin like domains 3 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:24086156) Ensembl
MGI		 PMID:24086156 GO_REF:0000107 NCBI chr 5:24,066,611...24,117,971
Ensembl chr 5:24,066,623...24,117,970 		JBrowse link
G TTC39C tetratricopeptide repeat domain 39C involved_in IEA
IBA		 TreeGrafter
GO_Central		 GO_REF:0000033 GO_REF:0000118 NCBI chr 6:108,859,792...108,968,236
Ensembl chr 6:108,860,324...108,968,678 		JBrowse link
outer ear morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G EYA1 EYA transcriptional coactivator and phosphatase 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:10471511) Ensembl
MGI		 PMID:10471511 GO_REF:0000107 NCBI chr 4:63,970,939...64,328,107
Ensembl chr 4:63,970,807...64,328,105 		JBrowse link
G FGFR1 fibroblast growth factor receptor 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:15630379) Ensembl
MGI		 PMID:15630379 GO_REF:0000107 NCBI chr15:48,053,895...48,106,634
Ensembl chr15:48,053,340...48,106,724 		JBrowse link
G GAS1 growth arrest specific 1 acts_upstream_of_or_within ISO (PMID:17525797) MGI PMID:17525797 NCBI chr10:28,509,168...28,511,554
Ensembl chr10:28,509,261...28,510,301 		JBrowse link
G HOXA1 homeobox A1 involved_in ISO (PMID:16155570) DFLAT PMID:16155570 NCBI chr18:45,477,561...45,480,306
Ensembl chr18:45,477,461...45,480,152 		JBrowse link
G MAPK1 mitogen-activated protein kinase 1 acts_upstream_of_or_within ISO (PMID:18952847) MGI PMID:18952847 NCBI chr14:50,083,079...50,165,528
Ensembl chr14:50,082,896...50,165,513 		JBrowse link
G MAPK3 mitogen-activated protein kinase 3 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:18952847) Ensembl
MGI		 PMID:18952847 GO_REF:0000107 NCBI chr 3:18,291,444...18,299,410
Ensembl chr 3:18,291,445...18,299,567 		JBrowse link
G PRKRA protein activator of interferon induced protein kinase EIF2AK2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:16571658) Ensembl
MGI		 PMID:16571658 GO_REF:0000107 NCBI chr15:84,134,273...84,156,596
Ensembl chr15:84,133,687...84,156,508 		JBrowse link
G TBX1 T-box transcription factor 1 acts_upstream_of_or_within ISO (PMID:16600992) MGI PMID:16600992 NCBI chr14:51,289,376...51,297,110
Ensembl chr14:51,289,321...51,296,725 		JBrowse link
G ZIC3 Zic family member 3 involved_in IEA Ensembl GO_REF:0000107 NCBI chr  X:112,592,951...112,605,087
Ensembl chr  X:112,593,301...112,604,814 		JBrowse link
positive regulation of otic vesicle morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G STOX1 storkhead box 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr14:71,927,387...71,985,239
Ensembl chr14:71,928,399...71,985,233 		JBrowse link
semicircular canal formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G HOXA1 homeobox A1 involved_in ISO (PMID:16155570) DFLAT PMID:16155570 NCBI chr18:45,477,561...45,480,306
Ensembl chr18:45,477,461...45,480,152 		JBrowse link
semicircular canal fusion term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G FGF10 fibroblast growth factor 10 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:15765517) Ensembl
MGI		 PMID:15765517 GO_REF:0000107 NCBI chr16:28,695,465...28,779,953
Ensembl chr16:28,695,470...28,777,509 		JBrowse link
semicircular canal morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CHD7 chromodomain helicase DNA binding protein 7 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:19855134) Ensembl
MGI		 PMID:19855134 GO_REF:0000107 NCBI chr 4:72,572,455...72,754,443
Ensembl chr 4:72,573,453...72,694,146 		JBrowse link
G EYA1 EYA transcriptional coactivator and phosphatase 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:10072433) Ensembl
MGI		 PMID:10072433 GO_REF:0000107 NCBI chr 4:63,970,939...64,328,107
Ensembl chr 4:63,970,807...64,328,105 		JBrowse link
G FGF10 fibroblast growth factor 10 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:17601531) Ensembl
MGI		 PMID:17601531 GO_REF:0000107 NCBI chr16:28,695,465...28,779,953
Ensembl chr16:28,695,470...28,777,509 		JBrowse link
G FGF3 fibroblast growth factor 3 acts_upstream_of_or_within ISO (PMID:17601531) MGI PMID:17601531 NCBI chr 2:3,489,208...3,496,532
Ensembl chr 2:3,489,009...3,497,533 		JBrowse link
G NR4A3 nuclear receptor subfamily 4 group A member 3 acts_upstream_of_or_within ISO (PMID:11784868) MGI PMID:11784868 NCBI chr 1:241,569,867...241,611,735
Ensembl chr 1:241,570,010...241,611,727 		JBrowse link
G TBX1 T-box transcription factor 1 acts_upstream_of_or_within ISO (PMID:19855134) MGI PMID:19855134 NCBI chr14:51,289,376...51,297,110
Ensembl chr14:51,289,321...51,296,725 		JBrowse link
G TBX3 T-box transcription factor 3 involved_in IEA Ensembl GO_REF:0000107 NCBI chr14:37,582,704...37,596,767
Ensembl chr14:37,582,822...37,596,766 		JBrowse link
G ZEB1 zinc finger E-box binding homeobox 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:21980308) Ensembl
MGI		 PMID:21980308 GO_REF:0000107 NCBI chr10:42,013,114...42,216,139
Ensembl chr10:42,013,084...42,214,205 		JBrowse link
vestibular receptor cell morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G PTPRQ protein tyrosine phosphatase receptor type Q involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:22357859) Ensembl
MGI		 PMID:22357859 GO_REF:0000107 NCBI chr 5:100,787,025...101,081,145
Ensembl chr 5:100,787,027...101,033,334 		JBrowse link
vestibular receptor cell stereocilium organization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G PLS1 plastin 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr13:83,307,692...83,434,133
Ensembl chr13:83,308,007...83,434,128 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 17799
    developmental process 6719
      anatomical structure morphogenesis 2946
        animal organ morphogenesis 1161
          embryonic organ morphogenesis 334
            ear morphogenesis 146
              inner ear morphogenesis + 122
              middle ear morphogenesis 26
              outer ear morphogenesis + 9
Path 2
Term Annotations click to browse term
  biological_process 17799
    developmental process 6719
      anatomical structure development 6314
        multicellular organism development 5105
          embryo development 1329
            embryonic organ development 545
              embryonic organ morphogenesis 334
                ear morphogenesis 146
                  inner ear morphogenesis + 122
                  middle ear morphogenesis 26
                  outer ear morphogenesis + 9
paths to the root