Send us a Message



Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   

ONTOLOGY REPORT - ANNOTATIONS


Term:pigment metabolic process
go back to main search page
Accession:GO:0042440 term browser browse the term
Definition:The chemical reactions and pathways involving pigment, any general or particular coloring matter in living organisms, e.g. melanin.
Synonyms:exact_synonym: pigment metabolism


GViewer not supported for the selected species.

show annotations for term's descendants           Sort by:
carotenoid biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ppox protoporphyrinogen oxidase involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936903:470,317...474,705
Ensembl chrNW_004936903:470,344...478,025
JBrowse link
flavone metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ppargc1a PPARG coactivator 1 alpha ISO hesperetin RGD PMID:22767158 RGD:7242166 NCBI chrNW_004936477:4,881,230...5,488,208
Ensembl chrNW_004936477:5,199,881...5,488,226
JBrowse link
flavonol biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Tgds TDP-glucose 4,6-dehydratase involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936472:14,993,579...15,016,270
Ensembl chrNW_004936472:14,993,710...15,014,408
JBrowse link
heme A biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Alad aminolevulinate dehydratase involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936559:226,481...237,258
Ensembl chrNW_004936559:226,424...241,684
JBrowse link
G Alas1 5'-aminolevulinate synthase 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936529:3,518,337...3,531,842
Ensembl chrNW_004936529:3,518,322...3,531,845
JBrowse link
G Cpox coproporphyrinogen oxidase involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936630:4,412,099...4,424,867
Ensembl chrNW_004936630:4,412,273...4,425,520
JBrowse link
G Fech ferrochelatase involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936497:6,755,626...6,788,568
Ensembl chrNW_004936497:6,755,553...6,790,944
JBrowse link
G Hmbs hydroxymethylbilane synthase involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936542:4,037,888...4,046,089
Ensembl chrNW_004936542:4,037,201...4,050,810
JBrowse link
G LOC101959085 cytochrome c oxidase assembly protein COX15 homolog involved_in IEA InterPro
TreeGrafter
Ensembl
GO_REF:0000002 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936636:385,198...401,090
Ensembl chrNW_004936636:385,018...401,851
JBrowse link
G LOC101967907 protoheme IX farnesyltransferase, mitochondrial involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:16103131)
(PMID:16782876)
Ensembl
MGI
TreeGrafter
PMID:16103131 PMID:16782876 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936724:783,591...905,625
Ensembl chrNW_004936724:783,224...905,710
JBrowse link
G Ppox protoporphyrinogen oxidase involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936903:470,317...474,705
Ensembl chrNW_004936903:470,344...478,025
JBrowse link
G Urod uroporphyrinogen decarboxylase involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936474:26,207,169...26,210,599
Ensembl chrNW_004936474:26,207,169...26,210,623
JBrowse link
G Uros uroporphyrinogen III synthase involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936486:13,792,354...13,816,744
Ensembl chrNW_004936486:13,791,286...13,817,238
JBrowse link
heme B biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Abcb6 ATP binding cassette subfamily B member 6 (LAN blood group) NOT|involved_in ISO (PMID:22655043) UniProt PMID:22655043 NCBI chrNW_004936569:1,628,649...1,635,599
Ensembl chrNW_004936569:1,625,374...1,635,694
JBrowse link
G Alad aminolevulinate dehydratase involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936559:226,481...237,258
Ensembl chrNW_004936559:226,424...241,684
JBrowse link
G Alas1 5'-aminolevulinate synthase 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936529:3,518,337...3,531,842
Ensembl chrNW_004936529:3,518,322...3,531,845
JBrowse link
G Cpox coproporphyrinogen oxidase involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936630:4,412,099...4,424,867
Ensembl chrNW_004936630:4,412,273...4,425,520
JBrowse link
G Fech ferrochelatase involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936497:6,755,626...6,788,568
Ensembl chrNW_004936497:6,755,553...6,790,944
JBrowse link
G Hmbs hydroxymethylbilane synthase involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936542:4,037,888...4,046,089
Ensembl chrNW_004936542:4,037,201...4,050,810
JBrowse link
G Ppox protoporphyrinogen oxidase involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936903:470,317...474,705
Ensembl chrNW_004936903:470,344...478,025
JBrowse link
G Urod uroporphyrinogen decarboxylase involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936474:26,207,169...26,210,599
Ensembl chrNW_004936474:26,207,169...26,210,623
JBrowse link
G Uros uroporphyrinogen III synthase involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936486:13,792,354...13,816,744
Ensembl chrNW_004936486:13,791,286...13,817,238
JBrowse link
heme biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Abcb10 ATP binding cassette subfamily B member 10 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936484:20,154,467...20,179,748
Ensembl chrNW_004936484:20,155,595...20,180,183
JBrowse link
G Alad aminolevulinate dehydratase acts_upstream_of_or_within
involved_in
ISO
IEA
(PMID:14050799), (PMID:4959158), (PMID:4981581) RGD
MGI
TreeGrafter
Ensembl
UniProt
PMID:1764448 PMID:4959158 PMID:4981581 PMID:14050799 GO_REF:0000043 GO_REF:0000107 GO_REF:0000118 RGD:1599020 NCBI chrNW_004936559:226,481...237,258
Ensembl chrNW_004936559:226,424...241,684
JBrowse link
G Alas1 5'-aminolevulinate synthase 1 involved_in IEA UniProt
TreeGrafter
GO_REF:0000043 GO_REF:0000118 NCBI chrNW_004936529:3,518,337...3,531,842
Ensembl chrNW_004936529:3,518,322...3,531,845
JBrowse link
G Alas2 5'-aminolevulinate synthase 2 involved_in IEA UniProt
TreeGrafter
Ensembl
GO_REF:0000043 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936751:1,818,255...1,841,028
Ensembl chrNW_004936751:1,814,446...1,841,531
JBrowse link
G Atp5if1 ATP synthase inhibitory factor subunit 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936474:12,396,416...12,399,760
Ensembl chrNW_004936474:12,396,023...12,401,023
JBrowse link
G Cpox coproporphyrinogen oxidase acts_upstream_of_or_within
involved_in
ISO
IEA
(PMID:8407975) RGD
MGI
UniProt
Ensembl
PMID:3955059 PMID:8407975 GO_REF:0000107 GO_REF:0000117 RGD:1600961 NCBI chrNW_004936630:4,412,099...4,424,867
Ensembl chrNW_004936630:4,412,273...4,425,520
JBrowse link
G Fech ferrochelatase acts_upstream_of_or_within
involved_in
ISO
IEA
(PMID:15496139), (PMID:16503645)
(PMID:16306232)
(PMID:8611576)
(PMID:9989256)
RGD
MGI
TreeGrafter
Ensembl
UniProt
InterPro
PMID:3955059 PMID:8611576 PMID:9989256 PMID:15496139 PMID:16306232 More... GO_REF:0000002 GO_REF:0000043 GO_REF:0000104 GO_REF:0000107 GO_REF:0000118 RGD:1600961 NCBI chrNW_004936497:6,755,626...6,788,568
Ensembl chrNW_004936497:6,755,553...6,790,944
JBrowse link
G Hmbs hydroxymethylbilane synthase involved_in IEA Ensembl
TreeGrafter
GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936542:4,037,888...4,046,089
Ensembl chrNW_004936542:4,037,201...4,050,810
JBrowse link
G Hnf1a HNF1 homeobox A involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:10617683) Ensembl
MGI
PMID:10617683 GO_REF:0000107 NCBI chrNW_004936668:62,103...81,549
Ensembl chrNW_004936668:67,535...81,505
JBrowse link
G LOC101967907 protoheme IX farnesyltransferase, mitochondrial involved_in IEA UniProt
InterPro
GO_REF:0000002 GO_REF:0000043 NCBI chrNW_004936724:783,591...905,625
Ensembl chrNW_004936724:783,224...905,710
JBrowse link
G Pgrmc1 progesterone receptor membrane component 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936479:10,625,989...10,634,058
Ensembl chrNW_004936479:10,625,889...10,634,136
JBrowse link
G Ppox protoporphyrinogen oxidase acts_upstream_of_or_within
involved_in
ISO
IEA
(PMID:3346226) RGD
MGI
UniProt
Ensembl
PMID:3346226 PMID:3955059 GO_REF:0000043 GO_REF:0000107 RGD:1600961 NCBI chrNW_004936903:470,317...474,705
Ensembl chrNW_004936903:470,344...478,025
JBrowse link
G Slc11a2 solute carrier family 11 member 2 involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:11739192) Ensembl
MGI
PMID:11739192 GO_REF:0000107 NCBI chrNW_004936512:8,590,302...8,622,121
Ensembl chrNW_004936512:8,586,262...8,623,597
JBrowse link
G Slc25a39 solute carrier family 25 member 39 involved_in IEA UniProt GO_REF:0000043 NCBI chrNW_004936541:769,056...770,682
Ensembl chrNW_004936541:769,064...770,686
JBrowse link
G Tmem14c transmembrane protein 14C involved_in IEA UniProt GO_REF:0000043 NCBI chrNW_004936534:2,233,467...2,240,223 JBrowse link
G Urod uroporphyrinogen decarboxylase involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:17360334) UniProt
MGI
Ensembl
PMID:17360334 GO_REF:0000043 GO_REF:0000107 NCBI chrNW_004936474:26,207,169...26,210,599
Ensembl chrNW_004936474:26,207,169...26,210,623
JBrowse link
G Uros uroporphyrinogen III synthase involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936486:13,792,354...13,816,744
Ensembl chrNW_004936486:13,791,286...13,817,238
JBrowse link
heme catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Blvra biliverdin reductase A involved_in IEA UniProt
Ensembl
InterPro
GO_REF:0000002 GO_REF:0000104 GO_REF:0000107 NCBI chrNW_004936478:18,811,452...18,850,594
Ensembl chrNW_004936478:18,833,172...18,852,839
JBrowse link
G Blvrb biliverdin reductase B involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936661:2,808,998...2,818,123
Ensembl chrNW_004936661:2,808,950...2,818,178
JBrowse link
G Hmox1 heme oxygenase 1 acts_upstream_of_or_within
involved_in
ISO
IEA
(PMID:31571584) RGD
MGI
Ensembl
TreeGrafter
PMID:15226268 PMID:31571584 GO_REF:0000107 GO_REF:0000118 RGD:1547877 NCBI chrNW_004936492:5,042,353...5,049,216
Ensembl chrNW_004936492:5,042,330...5,049,311
JBrowse link
G Hmox2 heme oxygenase 2 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936530:4,556,617...4,558,250
Ensembl chrNW_004936530:4,556,706...4,557,663
JBrowse link
heme metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Abcb6 ATP binding cassette subfamily B member 6 (LAN blood group) involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936569:1,628,649...1,635,599
Ensembl chrNW_004936569:1,625,374...1,635,694
JBrowse link
G Hmox1 heme oxygenase 1 involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:16183037) Ensembl
MGI
PMID:16183037 GO_REF:0000107 NCBI chrNW_004936492:5,042,353...5,049,216
Ensembl chrNW_004936492:5,042,330...5,049,311
JBrowse link
G Hpx hemopexin involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:18556779) Ensembl
MGI
PMID:18556779 GO_REF:0000107 NCBI chrNW_004936842:485,515...495,684
Ensembl chrNW_004936842:485,517...494,742
JBrowse link
G Slc48a1 solute carrier family 48 member 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936512:5,672,952...5,680,502
Ensembl chrNW_004936512:5,672,952...5,684,113
JBrowse link
G Urod uroporphyrinogen decarboxylase involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:11134514) Ensembl
MGI
PMID:11134514 GO_REF:0000107 NCBI chrNW_004936474:26,207,169...26,210,599
Ensembl chrNW_004936474:26,207,169...26,210,623
JBrowse link
heme O biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Alad aminolevulinate dehydratase involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936559:226,481...237,258
Ensembl chrNW_004936559:226,424...241,684
JBrowse link
G Alas1 5'-aminolevulinate synthase 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936529:3,518,337...3,531,842
Ensembl chrNW_004936529:3,518,322...3,531,845
JBrowse link
G Cpox coproporphyrinogen oxidase involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936630:4,412,099...4,424,867
Ensembl chrNW_004936630:4,412,273...4,425,520
JBrowse link
G Fech ferrochelatase involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936497:6,755,626...6,788,568
Ensembl chrNW_004936497:6,755,553...6,790,944
JBrowse link
G Hmbs hydroxymethylbilane synthase involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936542:4,037,888...4,046,089
Ensembl chrNW_004936542:4,037,201...4,050,810
JBrowse link
G LOC101967907 protoheme IX farnesyltransferase, mitochondrial involved_in IEA Ensembl
TreeGrafter
GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936724:783,591...905,625
Ensembl chrNW_004936724:783,224...905,710
JBrowse link
G Ppox protoporphyrinogen oxidase involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936903:470,317...474,705
Ensembl chrNW_004936903:470,344...478,025
JBrowse link
G Urod uroporphyrinogen decarboxylase involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936474:26,207,169...26,210,599
Ensembl chrNW_004936474:26,207,169...26,210,623
JBrowse link
G Uros uroporphyrinogen III synthase involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936486:13,792,354...13,816,744
Ensembl chrNW_004936486:13,791,286...13,817,238
JBrowse link
heme oxidation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Hmox1 heme oxygenase 1 involved_in IEA InterPro
TreeGrafter
Ensembl
GO_REF:0000002 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936492:5,042,353...5,049,216
Ensembl chrNW_004936492:5,042,330...5,049,311
JBrowse link
G Hmox2 heme oxygenase 2 involved_in IEA InterPro
TreeGrafter
GO_REF:0000002 GO_REF:0000118 NCBI chrNW_004936530:4,556,617...4,558,250
Ensembl chrNW_004936530:4,556,706...4,557,663
JBrowse link
melanin biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Asip agouti signaling protein involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:7665913) Ensembl
MGI
PMID:7665913 GO_REF:0000107 NCBI chrNW_004936561:6,341,667...6,346,440
Ensembl chrNW_004936561:6,341,623...6,346,458
JBrowse link
G Cited1 Cbp/p300 interacting transactivator with Glu/Asp rich carboxy-terminal domain 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936762:1,387,354...1,392,955
Ensembl chrNW_004936762:1,387,346...1,391,967
JBrowse link
G Dct dopachrome tautomerase involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:7665913) UniProt
MGI
Ensembl
PMID:7665913 GO_REF:0000043 GO_REF:0000107 NCBI chrNW_004936472:15,074,947...15,110,427
Ensembl chrNW_004936472:15,074,633...15,110,534
JBrowse link
G LOC101963449 D-dopachrome decarboxylase involved_in IEA UniProt GO_REF:0000043 NCBI chrNW_004936619:1,043,006...1,045,054 JBrowse link
G Mc1r melanocortin 1 receptor acts_upstream_of_or_within ISO (PMID:7665913) MGI PMID:7665913 NCBI chrNW_004936641:193,885...198,730 JBrowse link
G Myo5a myosin VA acts_upstream_of_or_within ISO (PMID:7665913) MGI PMID:7665913 NCBI chrNW_004936471:14,105,832...14,257,386
Ensembl chrNW_004936471:14,111,841...14,254,246
JBrowse link
G Oca2 OCA2 melanosomal transmembrane protein involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:7665913), (PMID:9548375) Ensembl
MGI
TreeGrafter
PMID:7665913 PMID:9548375 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936471:38,612,450...38,952,150
Ensembl chrNW_004936471:38,612,427...38,952,199
JBrowse link
G Pmel premelanosome protein involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:7665913) Ensembl
MGI
PMID:7665913 GO_REF:0000107 NCBI chrNW_004936646:368,064...379,085
Ensembl chrNW_004936646:365,809...379,130
JBrowse link
G Slc24a5 solute carrier family 24 member 5 involved_in
acts_upstream_of
IEA
ISO
(PMID:18166528) Ensembl
MGI
PMID:18166528 GO_REF:0000107 NCBI chrNW_004936471:10,470,078...10,492,334
Ensembl chrNW_004936471:10,470,046...10,493,104
JBrowse link
G Trpc1 transient receptor potential cation channel subfamily C member 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936540:4,340,672...4,417,655
Ensembl chrNW_004936540:4,323,528...4,418,685
JBrowse link
G Tyr tyrosinase involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:9548375)
(PMID:7665913)
UniProt
MGI
TreeGrafter
Ensembl
PMID:7665913 PMID:9548375 GO_REF:0000043 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936736:421,623...519,085
Ensembl chrNW_004936736:421,598...519,253
JBrowse link
G Tyrp1 tyrosinase related protein 1 involved_in IEA UniProt GO_REF:0000043 NCBI chrNW_004936539:6,537,448...6,555,440
Ensembl chrNW_004936539:6,537,509...6,556,513
JBrowse link
melanin biosynthetic process from tyrosine term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dct dopachrome tautomerase involved_in IEA Ensembl
TreeGrafter
GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936472:15,074,947...15,110,427
Ensembl chrNW_004936472:15,074,633...15,110,534
JBrowse link
G Oca2 OCA2 melanosomal transmembrane protein involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936471:38,612,450...38,952,150
Ensembl chrNW_004936471:38,612,427...38,952,199
JBrowse link
G Slc45a2 solute carrier family 45 member 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936518:7,094,949...7,139,961
Ensembl chrNW_004936518:7,095,038...7,137,277
JBrowse link
melanin metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bcl2 BCL2 apoptosis regulator involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:11709185) Ensembl
MGI
PMID:11709185 GO_REF:0000107 NCBI chrNW_004936497:2,209,136...2,373,580
Ensembl chrNW_004936497:2,210,334...2,210,921
JBrowse link
G Myo5a myosin VA acts_upstream_of_or_within ISO (PMID:9548375) MGI PMID:9548375 NCBI chrNW_004936471:14,105,832...14,257,386
Ensembl chrNW_004936471:14,111,841...14,254,246
JBrowse link
G Tyrp1 tyrosinase related protein 1 involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:9548375) Ensembl
MGI
PMID:9548375 GO_REF:0000107 NCBI chrNW_004936539:6,537,448...6,555,440
Ensembl chrNW_004936539:6,537,509...6,556,513
JBrowse link
G Vhl von Hippel-Lindau tumor suppressor involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:22627278) Ensembl
MGI
PMID:22627278 GO_REF:0000107 NCBI chrNW_004936602:3,135,790...3,140,622 JBrowse link
negative regulation of melanin biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Mfsd12 major facilitator superfamily domain containing 12 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936588:2,011,838...2,019,119
Ensembl chrNW_004936588:2,011,506...2,019,125
JBrowse link
G Opn3 opsin 3 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936526:8,833,495...8,876,631
Ensembl chrNW_004936526:8,833,455...8,876,729
JBrowse link
G Rapgef2 Rap guanine nucleotide exchange factor 2 involved_in ISO (MGI:5499726|PMID:16272156) UniProt PMID:16272156 MGI:5499726 NCBI chrNW_004936576:5,583,847...5,746,583
Ensembl chrNW_004936576:5,583,805...5,746,671
JBrowse link
G Slc24a5 solute carrier family 24 member 5 involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:18166528) Ensembl
MGI
PMID:18166528 GO_REF:0000107 NCBI chrNW_004936471:10,470,078...10,492,334
Ensembl chrNW_004936471:10,470,046...10,493,104
JBrowse link
G Wnt5a Wnt family member 5A involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936473:6,031,627...6,052,211
Ensembl chrNW_004936473:6,029,976...6,052,159
JBrowse link
pigment biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Sox2 SRY-box transcription factor 2 acts_upstream_of_or_within ISO (PMID:12036291) MGI PMID:12036291 NCBI chrNW_004936566:1,630,698...1,632,607
Ensembl chrNW_004936566:1,631,822...1,632,613
JBrowse link
pigment metabolic process involved in pigmentation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Mfsd12 major facilitator superfamily domain containing 12 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936588:2,011,838...2,019,119
Ensembl chrNW_004936588:2,011,506...2,019,125
JBrowse link
G Tbx2 T-box transcription factor 2 acts_upstream_of_negative_effect
involved_in
ISO
IEA
(MGI:6814712|PMID:26971330) UniProt
Ensembl
PMID:26971330 GO_REF:0000107 MGI:6814712 NCBI chrNW_004936490:2,769,264...2,778,342
Ensembl chrNW_004936490:2,769,231...2,805,238
JBrowse link
positive regulation of heme biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Abcb7 ATP binding cassette subfamily B member 7 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936683:1,224,703...1,326,761
Ensembl chrNW_004936683:1,222,450...1,326,765
JBrowse link
G Slc6a9 solute carrier family 6 member 9 involved_in ISO (MGI:6450351|PMID:28495915) ARUK-UCL PMID:28495915 MGI:6450351 NCBI chrNW_004936474:25,312,544...25,344,993
Ensembl chrNW_004936474:25,313,201...25,345,053
JBrowse link
positive regulation of melanin biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Appl1 adaptor protein, phosphotyrosine interacting with PH domain and leucine zipper 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936473:7,580,495...7,647,471
Ensembl chrNW_004936473:7,579,780...7,611,923
JBrowse link
G Asip agouti signaling protein involved_in IEA Ensembl
TreeGrafter
GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936561:6,341,667...6,346,440
Ensembl chrNW_004936561:6,341,623...6,346,458
JBrowse link
G Atp7a ATPase copper transporting alpha involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936683:2,874,022...2,936,214
Ensembl chrNW_004936683:2,874,042...2,935,040
JBrowse link
G Cdh3 cadherin 3 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936475:18,908,031...18,954,402
Ensembl chrNW_004936475:18,906,493...18,955,072
JBrowse link
G Gipc1 GIPC PDZ domain containing family member 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936659:3,019,829...3,030,280
Ensembl chrNW_004936659:3,012,012...3,026,883
JBrowse link
G Opn3 opsin 3 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936526:8,833,495...8,876,631
Ensembl chrNW_004936526:8,833,455...8,876,729
JBrowse link
G Pmel premelanosome protein involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936646:368,064...379,085
Ensembl chrNW_004936646:365,809...379,130
JBrowse link
G Rab38 RAB38, member RAS oncogene family ISO RGD PMID:17043139 RGD:152025192 NCBI chrNW_004936736:1,304,290...1,360,412
Ensembl chrNW_004936736:1,304,185...1,361,221
JBrowse link
G Tyrp1 tyrosinase related protein 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936539:6,537,448...6,555,440
Ensembl chrNW_004936539:6,537,509...6,556,513
JBrowse link
protoporphyrinogen IX biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Alad aminolevulinate dehydratase involved_in IEA UniProt GO_REF:0000041 NCBI chrNW_004936559:226,481...237,258
Ensembl chrNW_004936559:226,424...241,684
JBrowse link
G Alas1 5'-aminolevulinate synthase 1 involved_in IEA UniProt GO_REF:0000041 GO_REF:0000104 NCBI chrNW_004936529:3,518,337...3,531,842
Ensembl chrNW_004936529:3,518,322...3,531,845
JBrowse link
G Alas2 5'-aminolevulinate synthase 2 involved_in IEA UniProt GO_REF:0000041 GO_REF:0000104 NCBI chrNW_004936751:1,818,255...1,841,028
Ensembl chrNW_004936751:1,814,446...1,841,531
JBrowse link
G Cpox coproporphyrinogen oxidase involved_in ISO
IEA
RGD
TreeGrafter
UniProt
PMID:3814086 GO_REF:0000041 GO_REF:0000118 RGD:4145128 NCBI chrNW_004936630:4,412,099...4,424,867
Ensembl chrNW_004936630:4,412,273...4,425,520
JBrowse link
G Hmbs hydroxymethylbilane synthase involved_in IEA UniProt GO_REF:0000041 NCBI chrNW_004936542:4,037,888...4,046,089
Ensembl chrNW_004936542:4,037,201...4,050,810
JBrowse link
G Ireb2 iron responsive element binding protein 2 involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:15831703) Ensembl
MGI
PMID:15831703 GO_REF:0000107 NCBI chrNW_004936471:36,547,552...36,601,327
Ensembl chrNW_004936471:36,547,500...36,600,636
JBrowse link
G Ppox protoporphyrinogen oxidase involved_in IEA UniProt GO_REF:0000041 GO_REF:0000104 NCBI chrNW_004936903:470,317...474,705
Ensembl chrNW_004936903:470,344...478,025
JBrowse link
G Urod uroporphyrinogen decarboxylase involved_in IEA UniProt GO_REF:0000041 NCBI chrNW_004936474:26,207,169...26,210,599
Ensembl chrNW_004936474:26,207,169...26,210,623
JBrowse link
G Uros uroporphyrinogen III synthase involved_in IEA UniProt GO_REF:0000041 NCBI chrNW_004936486:13,792,354...13,816,744
Ensembl chrNW_004936486:13,791,286...13,817,238
JBrowse link
quercetin catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Lct lactase involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936469:40,064,822...40,108,423
Ensembl chrNW_004936469:40,064,822...40,107,447
JBrowse link
regulation of heme biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Srrd SRR1 domain containing involved_in ISO (MGI:6282940|PMID:28802827) UniProt PMID:28802827 MGI:6282940 NCBI chrNW_004936657:1,104,833...1,112,854
Ensembl chrNW_004936657:1,104,833...1,112,374
JBrowse link
G Tmem14a transmembrane protein 14A involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936476:8,179,949...8,198,204
Ensembl chrNW_004936476:8,180,141...8,185,884
JBrowse link
G Tmem14c transmembrane protein 14C involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:25157825) TreeGrafter
MGI
PMID:25157825 GO_REF:0000118 NCBI chrNW_004936534:2,233,467...2,240,223 JBrowse link
regulation of melanin biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ctns cystinosin, lysosomal cystine transporter involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936677:342,964...360,890
Ensembl chrNW_004936677:343,042...360,879
JBrowse link
G Mfsd12 major facilitator superfamily domain containing 12 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936588:2,011,838...2,019,119
Ensembl chrNW_004936588:2,011,506...2,019,125
JBrowse link
G Slc7a11 solute carrier family 7 member 11 involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:16037214) Ensembl
MGI
PMID:16037214 GO_REF:0000107 NCBI chrNW_004936535:9,177,305...9,242,743
Ensembl chrNW_004936535:9,177,143...9,242,566
JBrowse link
rhodopsin metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Grk3 G protein-coupled receptor kinase 3 ISO RGD PMID:17573483 RGD:5685371 NCBI chrNW_004936657:425,902...522,331
Ensembl chrNW_004936657:426,787...521,198
JBrowse link
xanthophyll biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Coq6 coenzyme Q6, monooxygenase involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936488:3,217,868...3,240,375
Ensembl chrNW_004936488:3,217,288...3,236,438
JBrowse link
zeaxanthin biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Rpe65 retinoid isomerohydrolase RPE65 involved_in IEA Ensembl
TreeGrafter
GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936591:3,347,346...3,368,062
Ensembl chrNW_004936591:3,347,272...3,368,015
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 15871
    metabolic process 9527
      pigment metabolic process 64
        anthocyanin-containing compound metabolic process + 0
        aurone metabolic process + 0
        flavone metabolic process + 3
        heme metabolic process + 30
        melanin metabolic process + 26
        phlobaphene metabolic process + 0
        pigment biosynthetic process + 52
        pigment catabolic process + 4
        pigment metabolic process involved in pigmentation + 3
paths to the root