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ONTOLOGY REPORT - ANNOTATIONS


Term:pigment metabolic process
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Accession:GO:0042440 term browser browse the term
Definition:The chemical reactions and pathways involving pigment, any general or particular coloring matter in living organisms, e.g. melanin.
Synonyms:exact_synonym: pigment metabolism


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carotenoid biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G PPOX protoporphyrinogen oxidase involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr20:2,814,571...2,819,384
Ensembl chr20:2,814,571...2,818,936
JBrowse link
flavone metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G PPARGC1A PPARG coactivator 1 alpha ISO hesperetin RGD PMID:22767158 RGD:7242166 NCBI chr27:25,882,385...26,563,530
Ensembl chr27:26,465,499...26,564,582
JBrowse link
flavonol biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G TGDS TDP-glucose 4,6-dehydratase involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr 3:73,403,520...73,424,985
Ensembl chr 3:73,400,485...73,424,892
JBrowse link
heme A biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ALAD aminolevulinate dehydratase involved_in ISO (PMID:14050799)
(PMID:5393940)
MGI PMID:5393940 PMID:14050799 NCBI chr12:26,173,063...26,185,456
Ensembl chr12:26,173,096...26,189,845
JBrowse link
G ALAS1 5'-aminolevulinate synthase 1 involved_in ISO (PMID:33307066) MGI PMID:33307066 NCBI chr22:13,558,011...13,573,740
Ensembl chr22:13,559,180...13,575,869
JBrowse link
G COX10 COX10, heme A:farnesyltransferase cytochrome c oxidase assembly factor involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:16103131)
(PMID:16782876)
Ensembl
MGI
TreeGrafter
PMID:16103131 PMID:16782876 GO_REF:0000107 GO_REF:0000118 NCBI chr16:13,410,654...13,550,922
Ensembl chr16:13,410,792...13,551,903
JBrowse link
G COX15 COX15, cytochrome c oxidase assembly homolog involved_in IEA InterPro
TreeGrafter
Ensembl
GO_REF:0000002 GO_REF:0000107 GO_REF:0000118 NCBI chr 9:92,739,137...92,797,190
Ensembl chr 9:92,779,573...92,796,943
JBrowse link
G CPOX coproporphyrinogen oxidase involved_in IEA Ensembl GO_REF:0000107 NCBI chr22:82,252,163...82,265,827
Ensembl chr22:82,251,972...82,267,350
JBrowse link
G FECH ferrochelatase involved_in IEA Ensembl GO_REF:0000107 NCBI chr18:22,143,268...22,182,259
Ensembl chr18:22,143,483...22,182,416
JBrowse link
G HMBS hydroxymethylbilane synthase involved_in IEA Ensembl GO_REF:0000107 NCBI chr 1:110,457,799...110,466,361
Ensembl chr 1:110,457,537...110,466,095
JBrowse link
G PPOX protoporphyrinogen oxidase involved_in ISO (PMID:3346226) MGI PMID:3346226 NCBI chr20:2,814,571...2,819,384
Ensembl chr20:2,814,571...2,818,936
JBrowse link
G UROD uroporphyrinogen decarboxylase involved_in ISO (PMID:17360334) MGI PMID:17360334 NCBI chr20:87,772,685...87,776,110
Ensembl chr20:87,772,261...87,775,978
JBrowse link
G UROS uroporphyrinogen III synthase involved_in IEA Ensembl GO_REF:0000107 NCBI chr 9:118,405,674...118,450,544
Ensembl chr 9:118,410,802...118,440,915
JBrowse link
heme B biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ABCB6 ATP binding cassette subfamily B member 6 (LAN blood group) NOT|involved_in ISO (PMID:22655043) UniProt PMID:22655043 NCBI chr10:105,113,729...105,122,948
Ensembl chr10:105,112,797...105,122,358
JBrowse link
G ALAD aminolevulinate dehydratase involved_in ISO (PMID:14050799)
(PMID:5393940)
MGI PMID:5393940 PMID:14050799 NCBI chr12:26,173,063...26,185,456
Ensembl chr12:26,173,096...26,189,845
JBrowse link
G ALAS1 5'-aminolevulinate synthase 1 involved_in ISO (PMID:33307066) MGI PMID:33307066 NCBI chr22:13,558,011...13,573,740
Ensembl chr22:13,559,180...13,575,869
JBrowse link
G CPOX coproporphyrinogen oxidase involved_in IEA Ensembl GO_REF:0000107 NCBI chr22:82,252,163...82,265,827
Ensembl chr22:82,251,972...82,267,350
JBrowse link
G FECH ferrochelatase involved_in IEA Ensembl GO_REF:0000107 NCBI chr18:22,143,268...22,182,259
Ensembl chr18:22,143,483...22,182,416
JBrowse link
G HMBS hydroxymethylbilane synthase involved_in IEA Ensembl GO_REF:0000107 NCBI chr 1:110,457,799...110,466,361
Ensembl chr 1:110,457,537...110,466,095
JBrowse link
G PPOX protoporphyrinogen oxidase involved_in ISO (PMID:3346226) MGI PMID:3346226 NCBI chr20:2,814,571...2,819,384
Ensembl chr20:2,814,571...2,818,936
JBrowse link
G UROD uroporphyrinogen decarboxylase involved_in ISO (PMID:17360334) MGI PMID:17360334 NCBI chr20:87,772,685...87,776,110
Ensembl chr20:87,772,261...87,775,978
JBrowse link
G UROS uroporphyrinogen III synthase involved_in IEA Ensembl GO_REF:0000107 NCBI chr 9:118,405,674...118,450,544
Ensembl chr 9:118,410,802...118,440,915
JBrowse link
heme biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ABCB10 ATP binding cassette subfamily B member 10 involved_in IEA Ensembl GO_REF:0000107 NCBI chr25:66,786,618...66,829,118
Ensembl chr25:66,786,484...66,828,916
JBrowse link
G ALAD aminolevulinate dehydratase acts_upstream_of_or_within
involved_in
ISO
IEA
(PMID:14050799), (PMID:4959158), (PMID:4981581) RGD
MGI
TreeGrafter
UniProt
PMID:1764448 PMID:4959158 PMID:4981581 PMID:14050799 GO_REF:0000043 GO_REF:0000118 RGD:1599020 NCBI chr12:26,173,063...26,185,456
Ensembl chr12:26,173,096...26,189,845
JBrowse link
G ALAS1 5'-aminolevulinate synthase 1 involved_in IEA UniProt
TreeGrafter
GO_REF:0000043 GO_REF:0000118 NCBI chr22:13,558,011...13,573,740
Ensembl chr22:13,559,180...13,575,869
JBrowse link
G ALAS2 5'-aminolevulinate synthase 2 involved_in IEA UniProt
TreeGrafter
Ensembl
GO_REF:0000043 GO_REF:0000107 GO_REF:0000118 NCBI chr  X:51,086,062...51,108,564
Ensembl chr  X:51,086,066...51,103,505
JBrowse link
G ATP5IF1 ATP synthase inhibitory factor subunit 1 involved_in ISO (MGI:5447588|PMID:23135403)
(PMID:23135403)
UniProt PMID:23135403 MGI:5447588 NCBI chr20:104,567,306...104,569,346 JBrowse link
G COX10 COX10, heme A:farnesyltransferase cytochrome c oxidase assembly factor involved_in IEA UniProt
InterPro
GO_REF:0000002 GO_REF:0000043 NCBI chr16:13,410,654...13,550,922
Ensembl chr16:13,410,792...13,551,903
JBrowse link
G CPOX coproporphyrinogen oxidase acts_upstream_of_or_within
involved_in
ISO
IEA
(PMID:8407975) RGD
MGI
UniProt
Ensembl
PMID:3955059 PMID:8407975 GO_REF:0000107 GO_REF:0000117 RGD:1600961 NCBI chr22:82,252,163...82,265,827
Ensembl chr22:82,251,972...82,267,350
JBrowse link
G FECH ferrochelatase acts_upstream_of_or_within
involved_in
ISO
IEA
(PMID:8611576)
(PMID:9989256)
(PMID:15496139), (PMID:16503645)
(PMID:16306232)
RGD
MGI
TreeGrafter
Ensembl
UniProt
InterPro
PMID:3955059 PMID:8611576 PMID:9989256 PMID:15496139 PMID:16306232 More... GO_REF:0000002 GO_REF:0000043 GO_REF:0000104 GO_REF:0000107 GO_REF:0000118 RGD:1600961 NCBI chr18:22,143,268...22,182,259
Ensembl chr18:22,143,483...22,182,416
JBrowse link
G HMBS hydroxymethylbilane synthase involved_in IEA Ensembl
TreeGrafter
GO_REF:0000107 GO_REF:0000118 NCBI chr 1:110,457,799...110,466,361
Ensembl chr 1:110,457,537...110,466,095
JBrowse link
G HNF1A HNF1 homeobox A acts_upstream_of_or_within ISO (PMID:10617683) MGI PMID:10617683 NCBI chr11:116,334,935...116,358,582
Ensembl chr11:116,335,675...116,357,751
JBrowse link
G PGRMC1 progesterone receptor membrane component 1 involved_in IEA Ensembl GO_REF:0000107
G PPOX protoporphyrinogen oxidase acts_upstream_of_or_within
involved_in
ISO
IEA
(PMID:3346226) RGD
MGI
UniProt
PMID:3346226 PMID:3955059 GO_REF:0000043 RGD:1600961 NCBI chr20:2,814,571...2,819,384
Ensembl chr20:2,814,571...2,818,936
JBrowse link
G SLC11A2 solute carrier family 11 member 2 involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:11739192) Ensembl
MGI
PMID:11739192 GO_REF:0000107 NCBI chr11:47,190,138...47,238,543
Ensembl chr11:47,197,168...47,235,130
JBrowse link
G SLC25A39 solute carrier family 25 member 39 involved_in IEA UniProt GO_REF:0000043 NCBI chr16:62,068,307...62,074,359
Ensembl chr16:62,069,127...62,074,579
JBrowse link
G TMEM14C transmembrane protein 14C involved_in IEA UniProt GO_REF:0000043 NCBI chr 2:61,419,719...61,420,199 JBrowse link
G UROD uroporphyrinogen decarboxylase involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:17360334) UniProt
MGI
PMID:17360334 GO_REF:0000043 NCBI chr20:87,772,685...87,776,110
Ensembl chr20:87,772,261...87,775,978
JBrowse link
G UROS uroporphyrinogen III synthase involved_in IEA Ensembl GO_REF:0000107 NCBI chr 9:118,405,674...118,450,544
Ensembl chr 9:118,410,802...118,440,915
JBrowse link
heme catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G BLVRA biliverdin reductase A involved_in IEA UniProt
Ensembl
InterPro
GO_REF:0000002 GO_REF:0000104 GO_REF:0000107 NCBI chr21:14,777,171...14,820,690
Ensembl chr21:14,773,621...14,820,782
JBrowse link
G BLVRB biliverdin reductase B involved_in IEA Ensembl GO_REF:0000107 NCBI chr 6:34,902,632...34,925,105
Ensembl chr 6:34,902,598...34,925,100
JBrowse link
G HMOX1 heme oxygenase 1 acts_upstream_of_or_within
involved_in
ISO
IEA
(PMID:31571584) RGD
MGI
TreeGrafter
PMID:15226268 PMID:31571584 GO_REF:0000118 RGD:1547877 NCBI chr19:18,144,466...18,157,944
Ensembl chr19:18,144,545...18,157,971
JBrowse link
heme metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ABCB6 ATP binding cassette subfamily B member 6 (LAN blood group) involved_in IEA Ensembl GO_REF:0000107 NCBI chr10:105,113,729...105,122,948
Ensembl chr10:105,112,797...105,122,358
JBrowse link
G HMOX1 heme oxygenase 1 acts_upstream_of_or_within ISO (PMID:16183037) MGI PMID:16183037 NCBI chr19:18,144,466...18,157,944
Ensembl chr19:18,144,545...18,157,971
JBrowse link
G HPX hemopexin involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:18556779) Ensembl
MGI
PMID:18556779 GO_REF:0000107 NCBI chr 1:58,385,860...58,396,269
Ensembl chr 1:58,386,190...58,396,298
JBrowse link
G SLC48A1 solute carrier family 48 member 1 involved_in ISO (PMID:31571584) MGI PMID:31571584 NCBI chr11:43,979,255...44,001,567
Ensembl chr11:43,993,272...44,000,177
JBrowse link
G UROD uroporphyrinogen decarboxylase acts_upstream_of_or_within ISO (PMID:11134514) MGI PMID:11134514 NCBI chr20:87,772,685...87,776,110
Ensembl chr20:87,772,261...87,775,978
JBrowse link
heme O biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ALAD aminolevulinate dehydratase involved_in ISO (PMID:14050799)
(PMID:5393940)
MGI PMID:5393940 PMID:14050799 NCBI chr12:26,173,063...26,185,456
Ensembl chr12:26,173,096...26,189,845
JBrowse link
G ALAS1 5'-aminolevulinate synthase 1 involved_in ISO (PMID:33307066) MGI PMID:33307066 NCBI chr22:13,558,011...13,573,740
Ensembl chr22:13,559,180...13,575,869
JBrowse link
G COX10 COX10, heme A:farnesyltransferase cytochrome c oxidase assembly factor involved_in IEA Ensembl
TreeGrafter
GO_REF:0000107 GO_REF:0000118 NCBI chr16:13,410,654...13,550,922
Ensembl chr16:13,410,792...13,551,903
JBrowse link
G CPOX coproporphyrinogen oxidase involved_in IEA Ensembl GO_REF:0000107 NCBI chr22:82,252,163...82,265,827
Ensembl chr22:82,251,972...82,267,350
JBrowse link
G FECH ferrochelatase involved_in IEA Ensembl GO_REF:0000107 NCBI chr18:22,143,268...22,182,259
Ensembl chr18:22,143,483...22,182,416
JBrowse link
G HMBS hydroxymethylbilane synthase involved_in IEA Ensembl GO_REF:0000107 NCBI chr 1:110,457,799...110,466,361
Ensembl chr 1:110,457,537...110,466,095
JBrowse link
G PPOX protoporphyrinogen oxidase involved_in ISO (PMID:3346226) MGI PMID:3346226 NCBI chr20:2,814,571...2,819,384
Ensembl chr20:2,814,571...2,818,936
JBrowse link
G UROD uroporphyrinogen decarboxylase involved_in ISO (PMID:17360334) MGI PMID:17360334 NCBI chr20:87,772,685...87,776,110
Ensembl chr20:87,772,261...87,775,978
JBrowse link
G UROS uroporphyrinogen III synthase involved_in IEA Ensembl GO_REF:0000107 NCBI chr 9:118,405,674...118,450,544
Ensembl chr 9:118,410,802...118,440,915
JBrowse link
heme oxidation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G HMOX1 heme oxygenase 1 involved_in IEA InterPro
TreeGrafter
GO_REF:0000002 GO_REF:0000118 NCBI chr19:18,144,466...18,157,944
Ensembl chr19:18,144,545...18,157,971
JBrowse link
melanin biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ASIP agouti signaling protein acts_upstream_of_or_within ISO (PMID:7665913) MGI PMID:7665913 NCBI chr 2:38,479,328...38,568,756 JBrowse link
G CITED1 Cbp/p300 interacting transactivator with Glu/Asp rich carboxy-terminal domain 1 involved_in ISO (MGI:4412464|PMID:11434569) UniProt PMID:11434569 MGI:4412464 NCBI chr  X:62,126,383...62,131,919
Ensembl chr  X:62,126,320...62,130,220
JBrowse link
G DCT dopachrome tautomerase involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:7665913) UniProt
MGI
PMID:7665913 GO_REF:0000043 NCBI chr 3:73,246,161...73,315,574
Ensembl chr 3:73,274,621...73,313,905
JBrowse link
G DDTL D-dopachrome tautomerase like involved_in IEA UniProt GO_REF:0000043 Ensembl chr19:7,072,419...7,077,848 JBrowse link
G LOC103217148 D-dopachrome decarboxylase involved_in IEA UniProt GO_REF:0000043 NCBI chr10:43,789,279...43,789,839 JBrowse link
G MYO5A myosin VA acts_upstream_of_or_within ISO (PMID:7665913) MGI PMID:7665913 NCBI chr26:30,865,947...31,085,184 JBrowse link
G OCA2 OCA2 melanosomal transmembrane protein involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:7665913), (PMID:9548375) TreeGrafter
MGI
PMID:7665913 PMID:9548375 GO_REF:0000118 NCBI chr26:54,022,346...54,429,991
Ensembl chr26:54,039,197...54,352,774
JBrowse link
G PMEL premelanosome protein involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:7665913) Ensembl
MGI
PMID:7665913 GO_REF:0000107 NCBI chr11:51,892,131...51,905,073
Ensembl chr11:51,887,730...51,904,324
JBrowse link
G SLC24A5 solute carrier family 24 member 5 involved_in
acts_upstream_of
IEA
ISO
(PMID:18166528) Ensembl
MGI
PMID:18166528 GO_REF:0000107 NCBI chr26:35,143,004...35,164,134
Ensembl chr26:35,143,097...35,163,718
JBrowse link
G TRPC1 transient receptor potential cation channel subfamily C member 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr15:47,827,295...47,909,207
Ensembl chr15:47,827,247...47,909,202
JBrowse link
G TYR tyrosinase involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:9548375)
(PMID:7665913)
UniProt
MGI
TreeGrafter
PMID:7665913 PMID:9548375 GO_REF:0000043 GO_REF:0000118 NCBI chr 1:80,330,051...80,444,646 JBrowse link
G TYR tyrosinase involved_in IEA UniProt
TreeGrafter
Ensembl
GO_REF:0000043 GO_REF:0000107 GO_REF:0000118 Ensembl chr 1:80,332,469...80,381,547 JBrowse link
G TYRP1 tyrosinase related protein 1 involved_in IEA UniProt GO_REF:0000043 NCBI chr12:66,841,867...66,861,730
Ensembl chr12:66,842,926...66,859,842
JBrowse link
melanin biosynthetic process from tyrosine term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G DCT dopachrome tautomerase involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr 3:73,246,161...73,315,574
Ensembl chr 3:73,274,621...73,313,905
JBrowse link
G OCA2 OCA2 melanosomal transmembrane protein involved_in ISO (PMID:25513726), (PMID:32966160) UniProt PMID:25513726 PMID:32966160 NCBI chr26:54,022,346...54,429,991
Ensembl chr26:54,039,197...54,352,774
JBrowse link
G SLC45A2 solute carrier family 45 member 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 4:33,178,614...33,219,664
Ensembl chr 4:33,179,349...33,219,028
JBrowse link
melanin metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G BCL2 BCL2 apoptosis regulator acts_upstream_of_or_within ISO (PMID:11709185) MGI PMID:11709185 NCBI chr18:16,440,560...16,643,187
Ensembl chr18:16,441,733...16,637,895
JBrowse link
G MYO5A myosin VA acts_upstream_of_or_within ISO (PMID:9548375) MGI PMID:9548375 NCBI chr26:30,865,947...31,085,184 JBrowse link
G TYRP1 tyrosinase related protein 1 acts_upstream_of_or_within ISO (PMID:9548375) MGI PMID:9548375 NCBI chr12:66,841,867...66,861,730
Ensembl chr12:66,842,926...66,859,842
JBrowse link
G VHL von Hippel-Lindau tumor suppressor involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:22627278) Ensembl
MGI
PMID:22627278 GO_REF:0000107 NCBI chr22:46,184,621...46,203,065
Ensembl chr22:46,184,756...46,204,428
JBrowse link
negative regulation of melanin biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G MFSD12 major facilitator superfamily domain containing 12 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 6:3,307,855...3,322,966
Ensembl chr 6:3,304,960...3,322,896
JBrowse link
G OPN3 opsin 3 involved_in IEA Ensembl GO_REF:0000107 NCBI chr25:78,671,900...78,720,697
Ensembl chr25:78,671,600...78,719,139
JBrowse link
G RAPGEF2 Rap guanine nucleotide exchange factor 2 involved_in ISO (MGI:5499726|PMID:16272156) UniProt PMID:16272156 MGI:5499726 NCBI chr 7:105,672,583...105,883,544
Ensembl chr 7:105,624,608...105,884,366
JBrowse link
G SLC24A5 solute carrier family 24 member 5 involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:18166528) Ensembl
MGI
PMID:18166528 GO_REF:0000107 NCBI chr26:35,143,004...35,164,134
Ensembl chr26:35,143,097...35,163,718
JBrowse link
G WNT5A Wnt family member 5A involved_in ISO (MGI:5619434|PMID:23569434) CACAO PMID:23569434 MGI:5619434 NCBI chr22:16,809,454...16,836,815
Ensembl chr22:16,809,451...16,825,048
JBrowse link
pigment biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G SOX2 SRY-box transcription factor 2 acts_upstream_of_or_within ISO (PMID:12036291) MGI PMID:12036291 NCBI chr15:7,673,581...7,676,812
Ensembl chr15:7,674,867...7,675,826
JBrowse link
pigment metabolic process involved in pigmentation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G MFSD12 major facilitator superfamily domain containing 12 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 6:3,307,855...3,322,966
Ensembl chr 6:3,304,960...3,322,896
JBrowse link
G TBX2 T-box transcription factor 2 acts_upstream_of_negative_effect
involved_in
ISO
IEA
(MGI:6814712|PMID:26971330) UniProt
Ensembl
PMID:26971330 GO_REF:0000107 MGI:6814712 NCBI chr16:32,627,296...32,636,797
Ensembl chr16:32,627,819...32,636,880
JBrowse link
positive regulation of heme biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ABCB7 ATP binding cassette subfamily B member 7 involved_in IEA Ensembl GO_REF:0000107 NCBI chr  X:64,633,989...64,748,638
Ensembl chr  X:64,634,079...64,701,938
JBrowse link
G SLC6A9 solute carrier family 6 member 9 involved_in ISO (MGI:6450351|PMID:28495915) ARUK-UCL PMID:28495915 MGI:6450351 NCBI chr20:88,774,354...88,809,726
Ensembl chr20:88,774,339...88,808,669
JBrowse link
positive regulation of melanin biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G APPL1 adaptor protein, phosphotyrosine interacting with PH domain and leucine zipper 1 involved_in ISO (PMID:21291857) UniProt PMID:21291857 NCBI chr22:18,546,694...18,591,239
Ensembl chr22:18,546,751...18,589,552
JBrowse link
G ASIP agouti signaling protein involved_in IEA TreeGrafter GO_REF:0000118 Ensembl chr 2:38,480,960...38,562,339 JBrowse link
G ATP7A ATPase copper transporting alpha involved_in ISO (PMID:11092760) UniProt PMID:11092760 NCBI chr  X:66,843,519...66,985,655
Ensembl chr  X:66,843,558...66,985,709
JBrowse link
G CDH3 cadherin 3 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 5:58,717,600...58,775,033
Ensembl chr 5:58,717,597...58,775,339
JBrowse link
G GIPC1 GIPC PDZ domain containing family member 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 6:13,136,647...13,155,259
Ensembl chr 6:13,136,624...13,142,002
JBrowse link
G OPN3 opsin 3 involved_in IEA Ensembl GO_REF:0000107 NCBI chr25:78,671,900...78,720,697
Ensembl chr25:78,671,600...78,719,139
JBrowse link
G PMEL premelanosome protein involved_in IEA Ensembl GO_REF:0000107 NCBI chr11:51,892,131...51,905,073
Ensembl chr11:51,887,730...51,904,324
JBrowse link
G RAB38 RAB38, member RAS oncogene family ISO RGD PMID:17043139 RGD:152025192 NCBI chr 1:79,256,996...79,316,967
Ensembl chr 1:79,256,835...79,316,789
JBrowse link
G TYRP1 tyrosinase related protein 1 involved_in ISO (MGI:5294257|PMID:21949658)
(PMID:21996312)
CACAO PMID:21949658 PMID:21996312 MGI:5294257 NCBI chr12:66,841,867...66,861,730
Ensembl chr12:66,842,926...66,859,842
JBrowse link
protoporphyrinogen IX biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ALAD aminolevulinate dehydratase involved_in IEA UniProt GO_REF:0000041 NCBI chr12:26,173,063...26,185,456
Ensembl chr12:26,173,096...26,189,845
JBrowse link
G ALAS1 5'-aminolevulinate synthase 1 involved_in IEA UniProt GO_REF:0000041 GO_REF:0000104 NCBI chr22:13,558,011...13,573,740
Ensembl chr22:13,559,180...13,575,869
JBrowse link
G ALAS2 5'-aminolevulinate synthase 2 involved_in IEA UniProt GO_REF:0000041 GO_REF:0000104 NCBI chr  X:51,086,062...51,108,564
Ensembl chr  X:51,086,066...51,103,505
JBrowse link
G CPOX coproporphyrinogen oxidase involved_in ISO
IEA
RGD
TreeGrafter
UniProt
PMID:3814086 GO_REF:0000041 GO_REF:0000118 RGD:4145128 NCBI chr22:82,252,163...82,265,827
Ensembl chr22:82,251,972...82,267,350
JBrowse link
G HMBS hydroxymethylbilane synthase involved_in IEA UniProt GO_REF:0000041 NCBI chr 1:110,457,799...110,466,361
Ensembl chr 1:110,457,537...110,466,095
JBrowse link
G IREB2 iron responsive element binding protein 2 acts_upstream_of_or_within ISO (PMID:15831703) MGI PMID:15831703 NCBI chr26:4,842,328...4,905,941
Ensembl chr26:4,842,122...4,905,964
JBrowse link
G PPOX protoporphyrinogen oxidase involved_in IEA UniProt GO_REF:0000041 GO_REF:0000104 NCBI chr20:2,814,571...2,819,384
Ensembl chr20:2,814,571...2,818,936
JBrowse link
G UROD uroporphyrinogen decarboxylase involved_in IEA UniProt GO_REF:0000041 NCBI chr20:87,772,685...87,776,110
Ensembl chr20:87,772,261...87,775,978
JBrowse link
G UROS uroporphyrinogen III synthase involved_in IEA UniProt GO_REF:0000041 NCBI chr 9:118,405,674...118,450,544
Ensembl chr 9:118,410,802...118,440,915
JBrowse link
quercetin catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G LCT lactase involved_in IEA Ensembl GO_REF:0000107 NCBI chr10:19,994,398...20,049,325
Ensembl chr10:19,994,384...20,049,097
JBrowse link
regulation of heme biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G LOC103222178 uncharacterized LOC103222178 acts_upstream_of_or_within ISO (PMID:25157825) MGI PMID:25157825 NCBI chr17:61,416,703...61,424,884 JBrowse link
G LOC103238774 transmembrane protein 14B involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr11:74,202,702...74,203,102 JBrowse link
G SRRD SRR1 domain containing involved_in ISO (MGI:6282940|PMID:28802827) UniProt PMID:28802827 MGI:6282940 NCBI chr19:9,387,861...9,396,219
Ensembl chr19:9,387,648...9,395,955
JBrowse link
G TMEM14A transmembrane protein 14A involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr17:19,819,918...19,835,919
Ensembl chr17:19,820,458...19,829,781
JBrowse link
G TMEM14C transmembrane protein 14C involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr 2:61,419,719...61,420,199 JBrowse link
regulation of melanin biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G LOC103242158 cystinosin involved_in ISO (PMID:22649030) UniProt PMID:22649030 NCBI chr16:3,138,716...3,164,512
Ensembl chr16:3,138,734...3,164,625
JBrowse link
G MFSD12 major facilitator superfamily domain containing 12 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 6:3,307,855...3,322,966
Ensembl chr 6:3,304,960...3,322,896
JBrowse link
G SLC7A11 solute carrier family 7 member 11 involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:16037214) Ensembl
MGI
PMID:16037214 GO_REF:0000107 NCBI chr 7:85,149,810...85,225,061
Ensembl chr 7:85,154,068...85,225,144
JBrowse link
rhodopsin metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G GRK3 G protein-coupled receptor kinase 3 ISO RGD PMID:17573483 RGD:5685371 NCBI chr19:8,438,543...8,601,652
Ensembl chr19:8,438,380...8,600,359
JBrowse link
xanthophyll biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G COQ6 coenzyme Q6, monooxygenase involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr24:51,164,328...51,178,522
Ensembl chr24:51,164,378...51,177,620
JBrowse link
zeaxanthin biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G RPE65 retinoid isomerohydrolase RPE65 involved_in IEA Ensembl
TreeGrafter
GO_REF:0000107 GO_REF:0000118 NCBI chr20:64,662,777...64,684,178
Ensembl chr20:64,664,358...64,683,211
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 16766
    metabolic process 10337
      pigment metabolic process 67
        anthocyanin-containing compound metabolic process + 0
        aurone metabolic process + 0
        flavone metabolic process + 3
        heme metabolic process + 31
        melanin metabolic process + 28
        phlobaphene metabolic process + 0
        pigment biosynthetic process + 56
        pigment catabolic process + 3
        pigment metabolic process involved in pigmentation + 3
paths to the root