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ONTOLOGY REPORT - ANNOTATIONS


Term:pigment metabolic process
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Accession:GO:0042440 term browser browse the term
Definition:The chemical reactions and pathways involving pigment, any general or particular coloring matter in living organisms, e.g. melanin.
Synonyms:exact_synonym: pigment metabolism



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carotenoid biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G PPOX protoporphyrinogen oxidase involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr38:21,306,973...21,310,892
Ensembl chr38:21,306,974...21,311,012
JBrowse link
flavone metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G PPARGC1A PPARG coactivator 1 alpha ISO hesperetin RGD PMID:22767158 RGD:7242166 NCBI chr 3:85,645,942...86,284,570
Ensembl chr 3:86,016,140...86,281,269
JBrowse link
flavonol biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G TGDS TDP-glucose 4,6-dehydratase involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr22:45,384,119...45,400,128
Ensembl chr22:45,384,412...45,400,314
JBrowse link
heme A biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ALAD aminolevulinate dehydratase involved_in IEA Ensembl GO_REF:0000107 NCBI chr11:67,736,643...67,752,399
Ensembl chr11:67,741,390...67,752,321
JBrowse link
G ALAS1 5'-aminolevulinate synthase 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr20:37,552,813...37,566,417
Ensembl chr20:37,552,814...37,566,638
JBrowse link
G COX10 cytochrome c oxidase assembly factor heme A:farnesyltransferase COX10 involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:16103131)
(PMID:16782876)
Ensembl
MGI
TreeGrafter
PMID:16103131 PMID:16782876 GO_REF:0000107 GO_REF:0000118 NCBI chr 5:37,853,495...37,982,228
Ensembl chr 5:37,852,875...37,982,243
JBrowse link
G COX15 cytochrome c oxidase assembly homolog COX15 involved_in IEA InterPro
TreeGrafter
Ensembl
GO_REF:0000002 GO_REF:0000107 GO_REF:0000118 NCBI chr28:12,609,690...12,625,467
Ensembl chr28:12,610,401...12,624,087
JBrowse link
G CPOX coproporphyrinogen oxidase involved_in IEA Ensembl GO_REF:0000107 NCBI chr33:5,446,022...5,459,152
Ensembl chr33:5,447,414...5,459,461
JBrowse link
G FECH ferrochelatase involved_in IEA Ensembl GO_REF:0000107 NCBI chr 1:18,352,184...18,384,251
Ensembl chr 1:18,345,811...18,383,092
JBrowse link
G HMBS hydroxymethylbilane synthase involved_in IEA Ensembl GO_REF:0000107 NCBI chr 5:14,767,306...14,775,205
Ensembl chr 5:14,767,666...14,775,082
JBrowse link
G PPOX protoporphyrinogen oxidase involved_in IEA Ensembl GO_REF:0000107 NCBI chr38:21,306,973...21,310,892
Ensembl chr38:21,306,974...21,311,012
JBrowse link
G UROD uroporphyrinogen decarboxylase involved_in IEA Ensembl GO_REF:0000107 NCBI chr15:15,313,808...15,317,130
Ensembl chr15:15,312,674...15,320,010
JBrowse link
G UROS uroporphyrinogen III synthase involved_in IEA Ensembl GO_REF:0000107 NCBI chr28:34,952,074...34,983,532
Ensembl chr28:34,948,003...34,983,532
JBrowse link
heme B biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ABCB6 ATP binding cassette subfamily B member 6 NOT|involved_in ISO (PMID:22655043) UniProt PMID:22655043 NCBI chr37:25,760,478...25,767,753
Ensembl chr37:25,760,477...25,769,841
JBrowse link
G ALAD aminolevulinate dehydratase involved_in IEA Ensembl GO_REF:0000107 NCBI chr11:67,736,643...67,752,399
Ensembl chr11:67,741,390...67,752,321
JBrowse link
G ALAS1 5'-aminolevulinate synthase 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr20:37,552,813...37,566,417
Ensembl chr20:37,552,814...37,566,638
JBrowse link
G CPOX coproporphyrinogen oxidase involved_in IEA Ensembl GO_REF:0000107 NCBI chr33:5,446,022...5,459,152
Ensembl chr33:5,447,414...5,459,461
JBrowse link
G FECH ferrochelatase involved_in IEA Ensembl GO_REF:0000107 NCBI chr 1:18,352,184...18,384,251
Ensembl chr 1:18,345,811...18,383,092
JBrowse link
G HMBS hydroxymethylbilane synthase involved_in IEA Ensembl GO_REF:0000107 NCBI chr 5:14,767,306...14,775,205
Ensembl chr 5:14,767,666...14,775,082
JBrowse link
G PPOX protoporphyrinogen oxidase involved_in IEA Ensembl GO_REF:0000107 NCBI chr38:21,306,973...21,310,892
Ensembl chr38:21,306,974...21,311,012
JBrowse link
G UROD uroporphyrinogen decarboxylase involved_in IEA Ensembl GO_REF:0000107 NCBI chr15:15,313,808...15,317,130
Ensembl chr15:15,312,674...15,320,010
JBrowse link
G UROS uroporphyrinogen III synthase involved_in IEA Ensembl GO_REF:0000107 NCBI chr28:34,952,074...34,983,532
Ensembl chr28:34,948,003...34,983,532
JBrowse link
heme biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ABCB10 ATP binding cassette subfamily B member 10 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 4:9,711,509...9,746,785
Ensembl chr 4:9,711,100...9,745,106
JBrowse link
G ALAD aminolevulinate dehydratase acts_upstream_of_or_within
involved_in
ISO
IEA
(PMID:14050799), (PMID:4959158), (PMID:4981581) RGD
MGI
TreeGrafter
UniProt
Ensembl
PMID:1764448 PMID:4959158 PMID:4981581 PMID:14050799 GO_REF:0000043 GO_REF:0000107 GO_REF:0000118 RGD:1599020 NCBI chr11:67,736,643...67,752,399
Ensembl chr11:67,741,390...67,752,321
JBrowse link
G ALAS1 5'-aminolevulinate synthase 1 involved_in IEA UniProt
TreeGrafter
GO_REF:0000043 GO_REF:0000118 NCBI chr20:37,552,813...37,566,417
Ensembl chr20:37,552,814...37,566,638
JBrowse link
G ALAS2 5'-aminolevulinate synthase 2 involved_in IEA UniProt
TreeGrafter
GO_REF:0000043 GO_REF:0000118 NCBI chr  X:46,703,477...46,731,767
Ensembl chr  X:46,703,477...46,723,529
JBrowse link
G ATP5IF1 ATP synthase inhibitory factor subunit 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 2:72,188,562...72,191,344
Ensembl chr 2:72,188,266...72,191,326
JBrowse link
G COX10 cytochrome c oxidase assembly factor heme A:farnesyltransferase COX10 involved_in IEA UniProt
InterPro
GO_REF:0000002 GO_REF:0000043 NCBI chr 5:37,853,495...37,982,228
Ensembl chr 5:37,852,875...37,982,243
JBrowse link
G COX15 cytochrome c oxidase assembly homolog COX15 involved_in IEA UniProt GO_REF:0000043 NCBI chr28:12,609,690...12,625,467
Ensembl chr28:12,610,401...12,624,087
JBrowse link
G CPOX coproporphyrinogen oxidase acts_upstream_of_or_within
involved_in
ISO
IEA
(PMID:8407975) RGD
MGI
UniProt
Ensembl
PMID:3955059 PMID:8407975 GO_REF:0000107 GO_REF:0000117 RGD:1600961 NCBI chr33:5,446,022...5,459,152
Ensembl chr33:5,447,414...5,459,461
JBrowse link
G FECH ferrochelatase acts_upstream_of_or_within
involved_in
ISO
IEA
(PMID:9989256)
(PMID:15496139), (PMID:16503645)
(PMID:16306232)
(PMID:8611576)
RGD
MGI
TreeGrafter
Ensembl
UniProt
InterPro
PMID:3955059 PMID:8611576 PMID:9989256 PMID:15496139 PMID:16306232 More... GO_REF:0000002 GO_REF:0000043 GO_REF:0000104 GO_REF:0000107 GO_REF:0000118 RGD:1600961 NCBI chr 1:18,352,184...18,384,251
Ensembl chr 1:18,345,811...18,383,092
JBrowse link
G HMBS hydroxymethylbilane synthase involved_in IEA Ensembl
TreeGrafter
GO_REF:0000107 GO_REF:0000118 NCBI chr 5:14,767,306...14,775,205
Ensembl chr 5:14,767,666...14,775,082
JBrowse link
G HNF1A HNF1 homeobox A involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:10617683) Ensembl
MGI
PMID:10617683 GO_REF:0000107 NCBI chr26:16,805,690...16,826,065
Ensembl chr26:16,805,690...16,824,790
JBrowse link
G LOC100684734 transmembrane protein 14C pseudogene involved_in IEA UniProt GO_REF:0000043 NCBI chr23:24,126,258...24,126,584 JBrowse link
G LOC478720 transmembrane protein 14C involved_in IEA UniProt GO_REF:0000043 NCBI chr35:10,454,501...10,462,296 JBrowse link
G PGRMC1 progesterone receptor membrane component 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr  X:91,329,243...91,337,951
Ensembl chr  X:91,329,243...91,337,951
JBrowse link
G PPOX protoporphyrinogen oxidase acts_upstream_of_or_within
involved_in
ISO
IEA
(PMID:3346226) RGD
MGI
Ensembl
UniProt
PMID:3346226 PMID:3955059 GO_REF:0000043 GO_REF:0000107 RGD:1600961 NCBI chr38:21,306,973...21,310,892
Ensembl chr38:21,306,974...21,311,012
JBrowse link
G SLC11A2 solute carrier family 11 member 2 involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:11739192) Ensembl
MGI
PMID:11739192 GO_REF:0000107 NCBI chr27:3,788,785...3,823,852
Ensembl chr27:3,787,855...3,822,672
JBrowse link
G SLC25A39 solute carrier family 25 member 39 involved_in IEA UniProt GO_REF:0000043 NCBI chr 9:19,103,104...19,107,691
Ensembl chr 9:19,102,787...19,107,694
JBrowse link
G UROD uroporphyrinogen decarboxylase involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:17360334) UniProt
TreeGrafter
MGI
Ensembl
PMID:17360334 GO_REF:0000043 GO_REF:0000107 GO_REF:0000118 NCBI chr15:15,313,808...15,317,130
Ensembl chr15:15,312,674...15,320,010
JBrowse link
G UROS uroporphyrinogen III synthase involved_in IEA Ensembl GO_REF:0000107 NCBI chr28:34,952,074...34,983,532
Ensembl chr28:34,948,003...34,983,532
JBrowse link
heme catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G BLVRA biliverdin reductase A involved_in IEA InterPro
UniProt
GO_REF:0000002 GO_REF:0000104 NCBI chr18:6,424,833...6,506,399
Ensembl chr18:6,426,255...6,495,647
JBrowse link
G BLVRB biliverdin reductase B involved_in IEA Ensembl GO_REF:0000107 NCBI chr 1:113,244,484...113,258,170
Ensembl chr 1:113,244,503...113,258,073
JBrowse link
G HMOX1 heme oxygenase 1 acts_upstream_of_or_within
involved_in
ISO
IEA
(PMID:31571584) RGD
MGI
Ensembl
TreeGrafter
PMID:15226268 PMID:31571584 GO_REF:0000107 GO_REF:0000118 RGD:1547877 NCBI chr10:28,744,404...28,751,544
Ensembl chr10:28,743,795...28,751,773
JBrowse link
G HMOX2 heme oxygenase 2 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr 6:36,881,073...36,898,062
Ensembl chr 6:36,881,506...36,898,042
JBrowse link
heme metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ABCB6 ATP binding cassette subfamily B member 6 involved_in IEA Ensembl GO_REF:0000107 NCBI chr37:25,760,478...25,767,753
Ensembl chr37:25,760,477...25,769,841
JBrowse link
G CYP2A13 cytochrome P450 family 2 subfamily A polypeptide 13 acts_upstream_of_or_within ISO (PMID:16183037) MGI PMID:16183037 NCBI chr 1:112,932,246...112,938,248
Ensembl chr 1:112,931,985...112,938,350
JBrowse link
G HMOX1 heme oxygenase 1 involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:16183037) Ensembl
MGI
PMID:16183037 GO_REF:0000107 NCBI chr10:28,744,404...28,751,544
Ensembl chr10:28,743,795...28,751,773
JBrowse link
G HPX hemopexin acts_upstream_of_or_within ISO (PMID:18556779) MGI PMID:18556779 NCBI chr21:29,749,913...29,759,176
Ensembl chr21:29,719,589...29,759,046
JBrowse link
G SLC48A1 solute carrier family 48 member 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr27:6,970,510...6,978,837
Ensembl chr27:6,971,402...6,978,942
JBrowse link
G UROD uroporphyrinogen decarboxylase involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:11134514) Ensembl
MGI
PMID:11134514 GO_REF:0000107 NCBI chr15:15,313,808...15,317,130
Ensembl chr15:15,312,674...15,320,010
JBrowse link
heme O biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ALAD aminolevulinate dehydratase involved_in IEA Ensembl GO_REF:0000107 NCBI chr11:67,736,643...67,752,399
Ensembl chr11:67,741,390...67,752,321
JBrowse link
G ALAS1 5'-aminolevulinate synthase 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr20:37,552,813...37,566,417
Ensembl chr20:37,552,814...37,566,638
JBrowse link
G COX10 cytochrome c oxidase assembly factor heme A:farnesyltransferase COX10 involved_in IEA Ensembl
TreeGrafter
GO_REF:0000107 GO_REF:0000118 NCBI chr 5:37,853,495...37,982,228
Ensembl chr 5:37,852,875...37,982,243
JBrowse link
G CPOX coproporphyrinogen oxidase involved_in IEA Ensembl GO_REF:0000107 NCBI chr33:5,446,022...5,459,152
Ensembl chr33:5,447,414...5,459,461
JBrowse link
G FECH ferrochelatase involved_in IEA Ensembl GO_REF:0000107 NCBI chr 1:18,352,184...18,384,251
Ensembl chr 1:18,345,811...18,383,092
JBrowse link
G HMBS hydroxymethylbilane synthase involved_in IEA Ensembl GO_REF:0000107 NCBI chr 5:14,767,306...14,775,205
Ensembl chr 5:14,767,666...14,775,082
JBrowse link
G PPOX protoporphyrinogen oxidase involved_in IEA Ensembl GO_REF:0000107 NCBI chr38:21,306,973...21,310,892
Ensembl chr38:21,306,974...21,311,012
JBrowse link
G UROD uroporphyrinogen decarboxylase involved_in IEA Ensembl GO_REF:0000107 NCBI chr15:15,313,808...15,317,130
Ensembl chr15:15,312,674...15,320,010
JBrowse link
G UROS uroporphyrinogen III synthase involved_in IEA Ensembl GO_REF:0000107 NCBI chr28:34,952,074...34,983,532
Ensembl chr28:34,948,003...34,983,532
JBrowse link
heme oxidation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G HMOX1 heme oxygenase 1 involved_in IEA InterPro
TreeGrafter
UniProt
Ensembl
GO_REF:0000002 GO_REF:0000104 GO_REF:0000107 GO_REF:0000118 NCBI chr10:28,744,404...28,751,544
Ensembl chr10:28,743,795...28,751,773
JBrowse link
G HMOX2 heme oxygenase 2 involved_in IEA InterPro
TreeGrafter
GO_REF:0000002 GO_REF:0000118 NCBI chr 6:36,881,073...36,898,062
Ensembl chr 6:36,881,506...36,898,042
JBrowse link
melanin biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ASIP agouti signaling protein involved_in
acts_upstream_of_or_within
ISS
ISO
(PMID:7665913) UniProt
MGI
PMID:7665913 GO_REF:0000024 NCBI chr24:23,338,757...23,393,913
Ensembl chr24:23,354,888...23,393,896
JBrowse link
G CITED1 Cbp/p300 interacting transactivator with Glu/Asp rich carboxy-terminal domain 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr  X:56,327,104...56,332,608
Ensembl chr  X:56,327,182...56,332,047
JBrowse link
G DCT dopachrome tautomerase involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:7665913) UniProt
MGI
Ensembl
PMID:7665913 GO_REF:0000043 GO_REF:0000107 NCBI chr22:45,271,709...45,305,272
Ensembl chr22:45,271,709...45,305,346
JBrowse link
G DDT D-dopachrome tautomerase involved_in IEA UniProt GO_REF:0000043 NCBI chr26:28,520,189...28,522,539 JBrowse link
G MC1R melanocortin 1 receptor acts_upstream_of_or_within ISO (PMID:7665913) MGI PMID:7665913 NCBI chr 5:63,694,296...63,695,249 JBrowse link
G MFSD12 major facilitator superfamily domain containing 12 involved_in IEA UniProt GO_REF:0000043 NCBI chr20:55,855,102...55,863,606
Ensembl chr20:55,858,687...55,862,181
JBrowse link
G MYO5A myosin VA acts_upstream_of_or_within ISO (PMID:7665913) MGI PMID:7665913 NCBI chr30:17,990,521...18,122,160
Ensembl chr30:17,888,419...18,213,061
JBrowse link
G OCA2 OCA2 melanosomal transmembrane protein involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:7665913), (PMID:9548375) Ensembl
MGI
TreeGrafter
PMID:7665913 PMID:9548375 GO_REF:0000107 GO_REF:0000118 NCBI chr 3:32,361,825...32,713,631
Ensembl chr 3:32,361,517...32,713,572
JBrowse link
G PMEL premelanosome protein involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:7665913) Ensembl
MGI
PMID:7665913 GO_REF:0000107 NCBI chr10:292,595...327,618
Ensembl chr10:292,597...300,098
JBrowse link
G SLC24A5 solute carrier family 24 member 5 acts_upstream_of ISO (PMID:18166528) MGI PMID:18166528 NCBI chr30:14,372,019...14,400,262
Ensembl chr30:14,371,778...14,400,152
JBrowse link
G TRPC1 transient receptor potential cation channel subfamily C member 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr23:38,350,066...38,416,086
Ensembl chr23:38,350,278...38,414,464
JBrowse link
G TYR tyrosinase involved_in
acts_upstream_of_or_within
IEA
ISO
IBA
(PMID:7665913)
(PMID:9548375)
UniProt
MGI
TreeGrafter
GO_Central
Ensembl
PMID:7665913 PMID:9548375 GO_REF:0000033 GO_REF:0000043 GO_REF:0000107 GO_REF:0000118 NCBI chr21:10,799,940...10,894,187
Ensembl chr21:10,799,940...10,894,191
JBrowse link
G TYRP1 tyrosinase related protein 1 involved_in IEA UniProt GO_REF:0000043 NCBI chr11:33,317,084...33,336,029
Ensembl chr11:33,317,121...33,335,498
JBrowse link
melanin biosynthetic process from tyrosine term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AMACR alpha-methylacyl-CoA racemase involved_in IEA Ensembl GO_REF:0000107 NCBI chr 4:73,815,438...73,836,016
Ensembl chr 4:73,815,291...73,867,437
JBrowse link
G DCT dopachrome tautomerase involved_in IEA Ensembl
TreeGrafter
GO_REF:0000107 GO_REF:0000118 NCBI chr22:45,271,709...45,305,272
Ensembl chr22:45,271,709...45,305,346
JBrowse link
G OCA2 OCA2 melanosomal transmembrane protein involved_in IEA Ensembl GO_REF:0000107 NCBI chr 3:32,361,825...32,713,631
Ensembl chr 3:32,361,517...32,713,572
JBrowse link
G SLC45A2 solute carrier family 45 member 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 4:73,838,684...73,868,222
Ensembl chr 4:73,815,291...73,867,437
JBrowse link
melanin metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G BCL2 BCL2 apoptosis regulator involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:11709185) Ensembl
MGI
PMID:11709185 GO_REF:0000107 NCBI chr 1:13,733,849...13,900,653
Ensembl chr 1:13,731,406...13,900,658
JBrowse link
G MYO5A myosin VA acts_upstream_of_or_within ISO (PMID:9548375) MGI PMID:9548375 NCBI chr30:17,990,521...18,122,160
Ensembl chr30:17,888,419...18,213,061
JBrowse link
G TYRP1 tyrosinase related protein 1 acts_upstream_of_or_within ISO (PMID:9548375) MGI PMID:9548375 NCBI chr11:33,317,084...33,336,029
Ensembl chr11:33,317,121...33,335,498
JBrowse link
G VHL von Hippel-Lindau tumor suppressor acts_upstream_of_or_within ISO (PMID:22627278) MGI PMID:22627278 NCBI chr20:8,206,616...8,211,347
Ensembl chr20:8,206,616...8,211,323
JBrowse link
negative regulation of melanin biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G MFSD12 major facilitator superfamily domain containing 12 involved_in IEA Ensembl GO_REF:0000107 NCBI chr20:55,855,102...55,863,606
Ensembl chr20:55,858,687...55,862,181
JBrowse link
G OPN3 opsin 3 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 7:32,995,047...33,040,873
Ensembl chr 7:32,996,938...33,040,876
JBrowse link
G RAPGEF2 Rap guanine nucleotide exchange factor 2 involved_in ISS UniProt GO_REF:0000024 NCBI chr15:56,133,094...56,353,609
Ensembl chr15:56,174,578...56,352,569
JBrowse link
G SLC24A5 solute carrier family 24 member 5 acts_upstream_of_or_within ISO (PMID:18166528) MGI PMID:18166528 NCBI chr30:14,372,019...14,400,262
Ensembl chr30:14,371,778...14,400,152
JBrowse link
G WNT5A Wnt family member 5A involved_in IEA Ensembl GO_REF:0000107 NCBI chr20:34,756,430...34,790,937
Ensembl chr20:34,769,930...34,786,673
JBrowse link
pigment biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G SOX2 SRY-box transcription factor 2 acts_upstream_of_or_within ISO (PMID:12036291) MGI PMID:12036291 NCBI chr34:14,853,000...14,855,153 JBrowse link
pigment metabolic process involved in pigmentation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G MFSD12 major facilitator superfamily domain containing 12 involved_in IMP
IBA
IEA
(PMID:31117290) UniProt
GO_Central
Ensembl
PMID:31117290 GO_REF:0000033 GO_REF:0000107 NCBI chr20:55,855,102...55,863,606
Ensembl chr20:55,858,687...55,862,181
JBrowse link
G TBX2 T-box transcription factor 2 acts_upstream_of_negative_effect ISO (MGI:6814712|PMID:26971330) UniProt PMID:26971330 MGI:6814712 NCBI chr 9:35,237,323...35,245,066
Ensembl chr 9:35,235,649...35,245,736
JBrowse link
positive regulation of heme biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ABCB7 ATP binding cassette subfamily B member 7 involved_in IEA Ensembl GO_REF:0000107 NCBI chr  X:58,305,804...58,470,827
Ensembl chr  X:58,306,776...58,471,417
JBrowse link
G SLC6A9 solute carrier family 6 member 9 involved_in ISO (MGI:6450351|PMID:28495915) ARUK-UCL PMID:28495915 MGI:6450351 NCBI chr15:16,235,342...16,267,161
Ensembl chr15:16,235,482...16,267,933
JBrowse link
positive regulation of melanin biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G APPL1 adaptor protein, phosphotyrosine interacting with PH domain and leucine zipper 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr20:33,123,577...33,166,831
Ensembl chr20:33,130,723...33,166,792
JBrowse link
G ASIP agouti signaling protein involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr24:23,338,757...23,393,913
Ensembl chr24:23,354,888...23,393,896
JBrowse link
G ATP7A ATPase copper transporting alpha involved_in IEA Ensembl GO_REF:0000107 NCBI chr  X:60,203,336...60,356,525
Ensembl chr  X:60,203,270...60,352,869
JBrowse link
G CDH3 cadherin 3 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 5:80,864,859...80,912,136
Ensembl chr 5:80,863,661...80,913,019
JBrowse link
G GIPC1 GIPC PDZ domain containing family member 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr20:48,144,076...48,155,069
Ensembl chr20:48,150,498...48,157,191
JBrowse link
G OPN3 opsin 3 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 7:32,995,047...33,040,873
Ensembl chr 7:32,996,938...33,040,876
JBrowse link
G PMEL premelanosome protein involved_in IEA Ensembl GO_REF:0000107 NCBI chr10:292,595...327,618
Ensembl chr10:292,597...300,098
JBrowse link
G PTGER1 prostaglandin E receptor 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr20:48,156,055...48,159,838
Ensembl chr20:48,157,973...48,159,921
JBrowse link
G RAB38 RAB38, member RAS oncogene family ISO RGD PMID:17043139 RGD:152025192 NCBI chr21:11,769,924...11,823,546
Ensembl chr21:11,769,351...11,822,815
JBrowse link
G TYRP1 tyrosinase related protein 1 involved_in ISO (MGI:5294257|PMID:21949658)
(PMID:21996312)
CACAO PMID:21949658 PMID:21996312 MGI:5294257 NCBI chr11:33,317,084...33,336,029
Ensembl chr11:33,317,121...33,335,498
JBrowse link
protoporphyrinogen IX biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ALAD aminolevulinate dehydratase involved_in IEA UniProt GO_REF:0000041 NCBI chr11:67,736,643...67,752,399
Ensembl chr11:67,741,390...67,752,321
JBrowse link
G ALAS1 5'-aminolevulinate synthase 1 involved_in IEA UniProt GO_REF:0000041 NCBI chr20:37,552,813...37,566,417
Ensembl chr20:37,552,814...37,566,638
JBrowse link
G ALAS2 5'-aminolevulinate synthase 2 involved_in IEA UniProt GO_REF:0000041 GO_REF:0000104 NCBI chr  X:46,703,477...46,731,767
Ensembl chr  X:46,703,477...46,723,529
JBrowse link
G CPOX coproporphyrinogen oxidase involved_in ISO
IEA
RGD
TreeGrafter
UniProt
PMID:3814086 GO_REF:0000041 GO_REF:0000118 RGD:4145128 NCBI chr33:5,446,022...5,459,152
Ensembl chr33:5,447,414...5,459,461
JBrowse link
G HMBS hydroxymethylbilane synthase involved_in IEA UniProt GO_REF:0000041 NCBI chr 5:14,767,306...14,775,205
Ensembl chr 5:14,767,666...14,775,082
JBrowse link
G IREB2 iron responsive element binding protein 2 involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:15831703) Ensembl
MGI
PMID:15831703 GO_REF:0000107 NCBI chr13:38,398,445...38,441,128
Ensembl chr13:38,400,591...38,441,015
JBrowse link
G PPOX protoporphyrinogen oxidase involved_in IEA UniProt GO_REF:0000041 GO_REF:0000104 NCBI chr38:21,306,973...21,310,892
Ensembl chr38:21,306,974...21,311,012
JBrowse link
G UROD uroporphyrinogen decarboxylase involved_in IEA UniProt GO_REF:0000041 NCBI chr15:15,313,808...15,317,130
Ensembl chr15:15,312,674...15,320,010
JBrowse link
G UROS uroporphyrinogen III synthase involved_in IEA UniProt GO_REF:0000041 NCBI chr28:34,952,074...34,983,532
Ensembl chr28:34,948,003...34,983,532
JBrowse link
quercetin catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G LCT lactase involved_in IEA Ensembl GO_REF:0000107 NCBI chr19:38,571,539...38,620,567
Ensembl chr19:38,572,058...38,620,567
JBrowse link
regulation of heme biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G LOC100684734 transmembrane protein 14C pseudogene involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr23:24,126,258...24,126,584 JBrowse link
G LOC478720 transmembrane protein 14C involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:25157825) TreeGrafter
MGI
PMID:25157825 GO_REF:0000118 NCBI chr35:10,454,501...10,462,296 JBrowse link
G SRRD SRR1 domain containing involved_in ISO (MGI:6282940|PMID:28802827) UniProt PMID:28802827 MGI:6282940 NCBI chr26:20,172,236...20,186,236 JBrowse link
G TMEM14A transmembrane protein 14A involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr12:20,303,724...20,318,336 JBrowse link
regulation of melanin biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CTNS cystinosin, lysosomal cystine transporter involved_in IEA Ensembl GO_REF:0000107 NCBI chr 9:47,474,488...47,490,951
Ensembl chr 9:47,473,901...47,490,252
JBrowse link
G MFSD12 major facilitator superfamily domain containing 12 involved_in IMP
IBA
IEA
(PMID:31117290) UniProt
GO_Central
Ensembl
PMID:31117290 GO_REF:0000033 GO_REF:0000107 NCBI chr20:55,855,102...55,863,606
Ensembl chr20:55,858,687...55,862,181
JBrowse link
G SLC7A11 solute carrier family 7 member 11 involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:16037214) Ensembl
MGI
PMID:16037214 GO_REF:0000107 NCBI chr19:4,289,792...4,379,060
Ensembl chr19:4,289,850...4,389,048
JBrowse link
rhodopsin metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G GRK3 G protein-coupled receptor kinase 3 ISO RGD PMID:17573483 RGD:5685371 NCBI chr26:19,385,059...19,512,528
Ensembl chr26:19,385,058...19,516,077
JBrowse link
xanthophyll biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G COQ6 coenzyme Q6, monooxygenase involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr 8:47,177,376...47,190,143
Ensembl chr 8:47,177,358...47,190,141
JBrowse link
zeaxanthin biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G RPE65 retinoid isomerohydrolase RPE65 involved_in IEA
ISS
IBA
Ensembl
UniProt
GO_Central
TreeGrafter
GO_REF:0000024 GO_REF:0000033 GO_REF:0000107 GO_REF:0000118 NCBI chr 6:76,887,399...76,911,133
Ensembl chr 6:76,887,399...76,911,131
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 17917
    metabolic process 10998
      pigment metabolic process 68
        anthocyanin-containing compound metabolic process + 0
        aurone metabolic process + 0
        flavone metabolic process + 3
        heme metabolic process + 32
        melanin metabolic process + 28
        phlobaphene metabolic process + 0
        pigment biosynthetic process + 55
        pigment catabolic process + 4
        pigment metabolic process involved in pigmentation + 3
paths to the root