Send us a Message



Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   

ONTOLOGY REPORT - ANNOTATIONS


Term:pigment metabolic process
go back to main search page
Accession:GO:0042440 term browser browse the term
Definition:The chemical reactions and pathways involving pigment, any general or particular coloring matter in living organisms, e.g. melanin.
Synonyms:exact_synonym: pigment metabolism


GViewer not supported for the selected species.

show annotations for term's descendants           Sort by:
flavone metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ppargc1a PPARG coactivator 1 alpha ISO hesperetin RGD PMID:22767158 RGD:7242166 NCBI chrNW_004955480:543,397...1,188,376
Ensembl chrNW_004955480:1,078,322...1,188,435
JBrowse link
heme A biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Alad aminolevulinate dehydratase involved_in ISO (PMID:5393940)
(PMID:14050799)
MGI PMID:5393940 PMID:14050799 NCBI chrNW_004955419:14,093,010...14,104,376
Ensembl chrNW_004955419:14,093,010...14,104,545
JBrowse link
G Alas1 5'-aminolevulinate synthase 1 involved_in ISO (PMID:33307066) MGI PMID:33307066 NCBI chrNW_004955532:3,810,469...3,823,456
Ensembl chrNW_004955532:3,810,464...3,823,456
JBrowse link
G Cpox coproporphyrinogen oxidase involved_in ISO (PMID:8407975) MGI PMID:8407975 NCBI chrNW_004955427:152,397...163,570
Ensembl chrNW_004955427:152,894...164,030
JBrowse link
G Fech ferrochelatase involved_in ISO (PMID:15677551) MGI PMID:15677551 NCBI chrNW_004955402:41,902,868...41,938,099
Ensembl chrNW_004955402:41,902,868...41,938,174
JBrowse link
G Hmbs hydroxymethylbilane synthase involved_in ISO (PMID:8563760) MGI PMID:8563760 NCBI chrNW_004955412:20,192,519...20,202,635
Ensembl chrNW_004955412:20,192,522...20,202,635
JBrowse link
G LOC102017801 cytochrome c oxidase assembly protein COX15 homolog involved_in ISO (PMID:12474143) HGNC-UCL PMID:12474143 NCBI chrNW_004955507:5,600,605...5,617,556
Ensembl chrNW_004955507:5,600,605...5,617,556
JBrowse link
G LOC102022268 protoheme IX farnesyltransferase, mitochondrial involved_in
acts_upstream_of_or_within
ISO (PMID:12928484)
(PMID:16782876)
(PMID:16103131)
HGNC-UCL
MGI
PMID:12928484 PMID:16103131 PMID:16782876 NCBI chrNW_004955467:3,294,200...3,415,778
Ensembl chrNW_004955467:3,292,018...3,415,778
JBrowse link
G Ppox protoporphyrinogen oxidase involved_in ISO (PMID:3346226) MGI PMID:3346226 NCBI chrNW_004955468:12,930,387...12,934,437
Ensembl chrNW_004955468:12,930,495...12,934,437
JBrowse link
G Urod uroporphyrinogen decarboxylase involved_in ISO (PMID:17360334) MGI PMID:17360334 NCBI chrNW_004955464:13,226,271...13,228,908
Ensembl chrNW_004955464:13,221,551...13,229,253
JBrowse link
G Uros uroporphyrinogen III synthase involved_in ISO (PMID:16532394) MGI PMID:16532394 NCBI chrNW_004955477:3,673,583...3,707,761
Ensembl chrNW_004955477:3,673,532...3,707,760
JBrowse link
heme B biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Abcb6 ATP binding cassette subfamily B member 6 (LAN blood group) NOT|involved_in ISO (PMID:22655043) UniProt PMID:22655043 NCBI chrNW_004955453:14,215,104...14,222,338
Ensembl chrNW_004955453:14,215,408...14,222,172
JBrowse link
G Alad aminolevulinate dehydratase involved_in ISO (PMID:14050799)
(PMID:5393940)
MGI PMID:5393940 PMID:14050799 NCBI chrNW_004955419:14,093,010...14,104,376
Ensembl chrNW_004955419:14,093,010...14,104,545
JBrowse link
G Alas1 5'-aminolevulinate synthase 1 involved_in ISO (PMID:33307066) MGI PMID:33307066 NCBI chrNW_004955532:3,810,469...3,823,456
Ensembl chrNW_004955532:3,810,464...3,823,456
JBrowse link
G Cpox coproporphyrinogen oxidase involved_in ISO (PMID:8407975) MGI PMID:8407975 NCBI chrNW_004955427:152,397...163,570
Ensembl chrNW_004955427:152,894...164,030
JBrowse link
G Fech ferrochelatase involved_in ISO (PMID:15677551) MGI PMID:15677551 NCBI chrNW_004955402:41,902,868...41,938,099
Ensembl chrNW_004955402:41,902,868...41,938,174
JBrowse link
G Hmbs hydroxymethylbilane synthase involved_in ISO (PMID:8563760) MGI PMID:8563760 NCBI chrNW_004955412:20,192,519...20,202,635
Ensembl chrNW_004955412:20,192,522...20,202,635
JBrowse link
G Ppox protoporphyrinogen oxidase involved_in ISO (PMID:3346226) MGI PMID:3346226 NCBI chrNW_004955468:12,930,387...12,934,437
Ensembl chrNW_004955468:12,930,495...12,934,437
JBrowse link
G Urod uroporphyrinogen decarboxylase involved_in ISO (PMID:17360334) MGI PMID:17360334 NCBI chrNW_004955464:13,226,271...13,228,908
Ensembl chrNW_004955464:13,221,551...13,229,253
JBrowse link
G Uros uroporphyrinogen III synthase involved_in ISO (PMID:16532394) MGI PMID:16532394 NCBI chrNW_004955477:3,673,583...3,707,761
Ensembl chrNW_004955477:3,673,532...3,707,760
JBrowse link
heme biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Abcb10 ATP binding cassette subfamily B member 10 involved_in ISO (MGI:5648801|PMID:24421385) UniProt PMID:24421385 MGI:5648801 NCBI chrNW_004955492:8,532,240...8,573,211
Ensembl chrNW_004955492:8,532,240...8,577,041
JBrowse link
G Alad aminolevulinate dehydratase acts_upstream_of_or_within
involved_in
ISO (PMID:14050799), (PMID:4959158), (PMID:4981581)
(PMID:11032836)
RGD
MGI
UniProt
PMID:1764448 PMID:4959158 PMID:4981581 PMID:11032836 PMID:14050799 RGD:1599020 NCBI chrNW_004955419:14,093,010...14,104,376
Ensembl chrNW_004955419:14,093,010...14,104,545
JBrowse link
G Alas2 5'-aminolevulinate synthase 2 involved_in ISO (MGI:3694153|PMID:9446639) UniProt PMID:9446639 MGI:3694153 NCBI chrNW_004955475:2,362,368...2,382,680
Ensembl chrNW_004955475:2,362,118...2,377,864
JBrowse link
G Atp5if1 ATP synthase inhibitory factor subunit 1 involved_in ISO (PMID:23135403)
(MGI:5447588|PMID:23135403)
UniProt PMID:23135403 MGI:5447588 NCBI chrNW_004955452:7,372,917...7,375,072
Ensembl chrNW_004955452:7,373,001...7,375,856
JBrowse link
G Cpox coproporphyrinogen oxidase acts_upstream_of_or_within ISO (PMID:8407975) RGD
MGI
PMID:3955059 PMID:8407975 RGD:1600961 NCBI chrNW_004955427:152,397...163,570
Ensembl chrNW_004955427:152,894...164,030
JBrowse link
G Fech ferrochelatase acts_upstream_of_or_within
involved_in
ISO (PMID:8611576)
(PMID:15496139), (PMID:16503645)
(PMID:16306232)
(PMID:9989256)
(PMID:27599036)
RGD
MGI
UniProt
PMID:3955059 PMID:8611576 PMID:9989256 PMID:15496139 PMID:16306232 More... RGD:1600961 NCBI chrNW_004955402:41,902,868...41,938,099
Ensembl chrNW_004955402:41,902,868...41,938,174
JBrowse link
G Hmbs hydroxymethylbilane synthase involved_in ISO (PMID:18936296) UniProt PMID:18936296 NCBI chrNW_004955412:20,192,519...20,202,635
Ensembl chrNW_004955412:20,192,522...20,202,635
JBrowse link
G Hnf1a HNF1 homeobox A acts_upstream_of_or_within ISO (PMID:10617683) MGI PMID:10617683 NCBI chrNW_004955455:10,694,102...10,717,613
Ensembl chrNW_004955455:10,694,102...10,717,613
JBrowse link
G Pgrmc1 progesterone receptor membrane component 1 involved_in ISO (PMID:27599036) UniProt PMID:27599036 NCBI chrNW_004955534:698,895...706,586
Ensembl chrNW_004955534:698,734...706,946
JBrowse link
G Ppox protoporphyrinogen oxidase acts_upstream_of_or_within
involved_in
ISO (PMID:3346226)
(PMID:7713909)
RGD
MGI
UniProt
PMID:3346226 PMID:3955059 PMID:7713909 RGD:1600961 NCBI chrNW_004955468:12,930,387...12,934,437
Ensembl chrNW_004955468:12,930,495...12,934,437
JBrowse link
G Urod uroporphyrinogen decarboxylase acts_upstream_of_or_within ISO (PMID:17360334) MGI PMID:17360334 NCBI chrNW_004955464:13,226,271...13,228,908
Ensembl chrNW_004955464:13,221,551...13,229,253
JBrowse link
G Uros uroporphyrinogen III synthase involved_in ISO (PMID:3805019) UniProt PMID:3805019 NCBI chrNW_004955477:3,673,583...3,707,761
Ensembl chrNW_004955477:3,673,532...3,707,760
JBrowse link
heme catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Blvra biliverdin reductase A involved_in ISO (PMID:10858451) UniProt PMID:10858451 NCBI chrNW_004955460:129,077...167,345
Ensembl chrNW_004955460:125,854...167,506
JBrowse link
G Blvrb biliverdin reductase B involved_in ISO (PMID:10858451), (PMID:7929092) UniProt PMID:7929092 PMID:10858451 NCBI chrNW_004955578:813,834...834,675
Ensembl chrNW_004955578:813,480...838,151
JBrowse link
G Hmox1 heme oxygenase 1 acts_upstream_of_or_within
involved_in
ISO (PMID:31571584)
(PMID:17915953)
RGD
MGI
BHF-UCL
PMID:15226268 PMID:17915953 PMID:31571584 RGD:1547877 NCBI chrNW_004955405:43,124,447...43,128,873
Ensembl chrNW_004955405:43,124,510...43,130,979
JBrowse link
heme metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Abcb6 ATP binding cassette subfamily B member 6 (LAN blood group) involved_in ISO (PMID:33007128) UniProt PMID:33007128 NCBI chrNW_004955453:14,215,104...14,222,338
Ensembl chrNW_004955453:14,215,408...14,222,172
JBrowse link
G Hmox1 heme oxygenase 1 acts_upstream_of_or_within ISO (PMID:16183037) MGI PMID:16183037 NCBI chrNW_004955405:43,124,447...43,128,873
Ensembl chrNW_004955405:43,124,510...43,130,979
JBrowse link
G Hpx hemopexin acts_upstream_of_or_within ISO (PMID:18556779) MGI PMID:18556779 NCBI chrNW_004955414:22,158,654...22,169,133
Ensembl chrNW_004955414:22,156,819...22,169,631
JBrowse link
G Slc48a1 solute carrier family 48 member 1 involved_in ISO (PMID:31571584) MGI PMID:31571584 NCBI chrNW_004955500:6,675,631...6,691,942
Ensembl chrNW_004955500:6,679,908...6,691,942
JBrowse link
G Urod uroporphyrinogen decarboxylase acts_upstream_of_or_within ISO (PMID:11134514) MGI PMID:11134514 NCBI chrNW_004955464:13,226,271...13,228,908
Ensembl chrNW_004955464:13,221,551...13,229,253
JBrowse link
heme O biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Alad aminolevulinate dehydratase involved_in ISO (PMID:5393940)
(PMID:14050799)
MGI PMID:5393940 PMID:14050799 NCBI chrNW_004955419:14,093,010...14,104,376
Ensembl chrNW_004955419:14,093,010...14,104,545
JBrowse link
G Alas1 5'-aminolevulinate synthase 1 involved_in ISO (PMID:33307066) MGI PMID:33307066 NCBI chrNW_004955532:3,810,469...3,823,456
Ensembl chrNW_004955532:3,810,464...3,823,456
JBrowse link
G Cpox coproporphyrinogen oxidase involved_in ISO (PMID:8407975) MGI PMID:8407975 NCBI chrNW_004955427:152,397...163,570
Ensembl chrNW_004955427:152,894...164,030
JBrowse link
G Fech ferrochelatase involved_in ISO (PMID:15677551) MGI PMID:15677551 NCBI chrNW_004955402:41,902,868...41,938,099
Ensembl chrNW_004955402:41,902,868...41,938,174
JBrowse link
G Hmbs hydroxymethylbilane synthase involved_in ISO (PMID:8563760) MGI PMID:8563760 NCBI chrNW_004955412:20,192,519...20,202,635
Ensembl chrNW_004955412:20,192,522...20,202,635
JBrowse link
G LOC102022268 protoheme IX farnesyltransferase, mitochondrial involved_in ISO (PMID:12928484) MGI PMID:12928484 NCBI chrNW_004955467:3,294,200...3,415,778
Ensembl chrNW_004955467:3,292,018...3,415,778
JBrowse link
G Ppox protoporphyrinogen oxidase involved_in ISO (PMID:3346226) MGI PMID:3346226 NCBI chrNW_004955468:12,930,387...12,934,437
Ensembl chrNW_004955468:12,930,495...12,934,437
JBrowse link
G Urod uroporphyrinogen decarboxylase involved_in ISO (PMID:17360334) MGI PMID:17360334 NCBI chrNW_004955464:13,226,271...13,228,908
Ensembl chrNW_004955464:13,221,551...13,229,253
JBrowse link
G Uros uroporphyrinogen III synthase involved_in ISO (PMID:16532394) MGI PMID:16532394 NCBI chrNW_004955477:3,673,583...3,707,761
Ensembl chrNW_004955477:3,673,532...3,707,760
JBrowse link
heme oxidation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Hmox1 heme oxygenase 1 involved_in ISO (PMID:17915953) BHF-UCL PMID:17915953 NCBI chrNW_004955405:43,124,447...43,128,873
Ensembl chrNW_004955405:43,124,510...43,130,979
JBrowse link
melanin biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Asip agouti signaling protein acts_upstream_of_or_within ISO (PMID:7665913) MGI PMID:7665913 NCBI chrNW_004955422:27,021,810...27,150,339
Ensembl chrNW_004955422:27,020,386...27,057,626
JBrowse link
G Cited1 Cbp/p300 interacting transactivator with Glu/Asp rich carboxy-terminal domain 1 involved_in ISO (MGI:4412464|PMID:11434569) UniProt PMID:11434569 MGI:4412464 NCBI chrNW_004955475:11,722,514...11,725,067 JBrowse link
G Dct dopachrome tautomerase acts_upstream_of_or_within ISO (PMID:7665913) MGI PMID:7665913 NCBI chrNW_004955404:15,359,402...15,395,556
Ensembl chrNW_004955404:15,359,402...15,395,535
JBrowse link
G Myo5a myosin VA acts_upstream_of_or_within ISO (PMID:7665913) MGI PMID:7665913 NCBI chrNW_004955409:2,409,503...2,530,539
Ensembl chrNW_004955409:2,428,815...2,530,012
JBrowse link
G Oca2 OCA2 melanosomal transmembrane protein acts_upstream_of_or_within ISO (PMID:7665913), (PMID:9548375) MGI PMID:7665913 PMID:9548375 NCBI chrNW_004955533:1,522,878...1,796,673
Ensembl chrNW_004955533:1,522,795...1,797,116
JBrowse link
G Pmel premelanosome protein acts_upstream_of_or_within ISO (PMID:7665913) MGI PMID:7665913 NCBI chrNW_004955458:3,544,855...3,555,453
Ensembl chrNW_004955458:3,544,961...3,554,619
JBrowse link
G Slc24a5 solute carrier family 24 member 5 acts_upstream_of ISO (PMID:18166528) MGI PMID:18166528 NCBI chrNW_004955409:5,747,624...5,768,122
Ensembl chrNW_004955409:5,747,624...5,768,122
JBrowse link
G Trpc1 transient receptor potential cation channel subfamily C member 1 involved_in ISO (PMID:8126111) CACAO PMID:8126111 NCBI chrNW_004955508:3,143,868...3,211,613
Ensembl chrNW_004955508:3,143,868...3,211,613
JBrowse link
G Tyr tyrosinase involved_in
acts_upstream_of_or_within
ISO (PMID:8126111)
(PMID:9548375)
(PMID:7665913)
CACAO
MGI
PMID:7665913 PMID:8126111 PMID:9548375 NCBI chrNW_004955414:4,244,035...4,314,001
Ensembl chrNW_004955414:4,244,035...4,314,001
JBrowse link
melanin biosynthetic process from tyrosine term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dct dopachrome tautomerase involved_in ISO (MGI:3690794|PMID:2169885)
(MGI:6827472|PMID:33100333)
UniProt PMID:2169885 PMID:33100333 MGI:3690794 MGI:6827472 NCBI chrNW_004955404:15,359,402...15,395,556
Ensembl chrNW_004955404:15,359,402...15,395,535
JBrowse link
G Oca2 OCA2 melanosomal transmembrane protein involved_in ISO (PMID:25513726), (PMID:32966160) UniProt PMID:25513726 PMID:32966160 NCBI chrNW_004955533:1,522,878...1,796,673
Ensembl chrNW_004955533:1,522,795...1,797,116
JBrowse link
G Slc45a2 solute carrier family 45 member 2 involved_in ISO (PMID:32966160)
(MGI:7338895|PMID:35469906)
UniProt PMID:32966160 PMID:35469906 MGI:7338895 NCBI chrNW_004955426:19,498,942...19,530,628
Ensembl chrNW_004955426:19,498,942...19,530,628
JBrowse link
melanin metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bcl2 BCL2 apoptosis regulator acts_upstream_of_or_within ISO (PMID:11709185) MGI PMID:11709185 NCBI chrNW_004955402:46,911,125...47,084,214
Ensembl chrNW_004955402:46,916,266...47,084,485
JBrowse link
G Myo5a myosin VA acts_upstream_of_or_within ISO (PMID:9548375) MGI PMID:9548375 NCBI chrNW_004955409:2,409,503...2,530,539
Ensembl chrNW_004955409:2,428,815...2,530,012
JBrowse link
G Tyrp1 tyrosinase related protein 1 acts_upstream_of_or_within ISO (PMID:9548375) MGI PMID:9548375 NCBI chrNW_004955434:15,913,208...15,932,193
Ensembl chrNW_004955434:15,913,968...15,931,740
JBrowse link
G Vhl von Hippel-Lindau tumor suppressor acts_upstream_of_or_within ISO (PMID:22627278) MGI PMID:22627278 NCBI chrNW_004955561:1,573,525...1,578,295
Ensembl chrNW_004955561:1,573,525...1,580,511
JBrowse link
negative regulation of melanin biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Mfsd12 major facilitator superfamily domain containing 12 involved_in ISO (MGI:5912387|PMID:29025994) CACAO PMID:29025994 MGI:5912387 NCBI chrNW_004955495:5,505,528...5,516,330
Ensembl chrNW_004955495:5,506,154...5,516,142
JBrowse link
G Opn3 opsin 3 involved_in ISO (PMID:31097585) UniProt PMID:31097585 NCBI chrNW_004955406:10,450,810...10,493,958
Ensembl chrNW_004955406:10,450,768...10,493,958
JBrowse link
G Rapgef2 Rap guanine nucleotide exchange factor 2 involved_in ISO (MGI:5499726|PMID:16272156) UniProt PMID:16272156 MGI:5499726 NCBI chrNW_004955471:12,670,837...12,838,910
Ensembl chrNW_004955471:12,670,764...12,815,430
JBrowse link
G Slc24a5 solute carrier family 24 member 5 acts_upstream_of_or_within ISO (PMID:18166528) MGI PMID:18166528 NCBI chrNW_004955409:5,747,624...5,768,122
Ensembl chrNW_004955409:5,747,624...5,768,122
JBrowse link
G Wnt5a Wnt family member 5A involved_in ISO (MGI:5619434|PMID:23569434) CACAO PMID:23569434 MGI:5619434 NCBI chrNW_004955430:5,304,817...5,325,684
Ensembl chrNW_004955430:5,304,745...5,325,684
JBrowse link
pigment biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Sox2 SRY-box transcription factor 2 acts_upstream_of_or_within ISO (PMID:12036291) MGI PMID:12036291 NCBI chrNW_004955420:10,671,888...10,674,080
Ensembl chrNW_004955420:10,671,978...10,672,934
JBrowse link
pigment metabolic process involved in pigmentation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Mfsd12 major facilitator superfamily domain containing 12 involved_in ISO (PMID:33208952)
(MGI:6492453|PMID:33208952)
(PMID:31117290)
UniProt PMID:31117290 PMID:33208952 MGI:6492453 NCBI chrNW_004955495:5,505,528...5,516,330
Ensembl chrNW_004955495:5,506,154...5,516,142
JBrowse link
G Tbx2 T-box transcription factor 2 acts_upstream_of_negative_effect ISO (MGI:6814712|PMID:26971330) UniProt PMID:26971330 MGI:6814712 NCBI chrNW_004955451:2,458,612...2,466,264
Ensembl chrNW_004955451:2,457,568...2,466,639
JBrowse link
positive regulation of heme biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Abcb7 ATP binding cassette subfamily B member 7 involved_in ISO (PMID:30765471)
(MGI:6695684|PMID:30765471)
UniProt PMID:30765471 MGI:6695684 NCBI chrNW_004955562:1,079,884...1,220,806
Ensembl chrNW_004955562:1,077,198...1,221,061
JBrowse link
G Slc6a9 solute carrier family 6 member 9 involved_in ISO (MGI:6450351|PMID:28495915) ARUK-UCL PMID:28495915 MGI:6450351 NCBI chrNW_004955537:3,520,516...3,549,492
Ensembl chrNW_004955537:3,520,516...3,550,022
JBrowse link
positive regulation of melanin biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Appl1 adaptor protein, phosphotyrosine interacting with PH domain and leucine zipper 1 involved_in ISO (PMID:21291857) UniProt PMID:21291857 NCBI chrNW_004955430:6,986,977...7,018,938
Ensembl chrNW_004955430:6,986,759...7,018,938
JBrowse link
G Atp7a ATPase copper transporting alpha involved_in ISO (PMID:11092760) UniProt PMID:11092760 NCBI chrNW_004955557:1,355,471...1,515,725
Ensembl chrNW_004955557:1,355,397...1,515,393
JBrowse link
G Cdh3 cadherin 3 involved_in ISO (PMID:23334344) UniProt PMID:23334344 NCBI chrNW_004955484:7,937,847...7,985,418
Ensembl chrNW_004955484:7,938,495...7,986,231
JBrowse link
G Gipc1 GIPC PDZ domain containing family member 1 involved_in ISO (PMID:21291857) UniProt PMID:21291857 NCBI chrNW_004955415:33,067,689...33,077,749
Ensembl chrNW_004955415:33,067,689...33,074,730
JBrowse link
G Opn3 opsin 3 involved_in ISO (PMID:28842328) UniProt PMID:28842328 NCBI chrNW_004955406:10,450,810...10,493,958
Ensembl chrNW_004955406:10,450,768...10,493,958
JBrowse link
G Pmel premelanosome protein involved_in ISO (MGI:5294257|PMID:21949658) CACAO PMID:21949658 MGI:5294257 NCBI chrNW_004955458:3,544,855...3,555,453
Ensembl chrNW_004955458:3,544,961...3,554,619
JBrowse link
G Rab38 RAB38, member RAS oncogene family ISO RGD PMID:17043139 RGD:152025192 NCBI chrNW_004955414:5,158,860...5,214,108
Ensembl chrNW_004955414:5,158,261...5,215,698
JBrowse link
G Tyrp1 tyrosinase related protein 1 involved_in ISO (PMID:21996312)
(MGI:5294257|PMID:21949658)
CACAO PMID:21949658 PMID:21996312 MGI:5294257 NCBI chrNW_004955434:15,913,208...15,932,193
Ensembl chrNW_004955434:15,913,968...15,931,740
JBrowse link
protoporphyrinogen IX biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cpox coproporphyrinogen oxidase ISO RGD PMID:3814086 RGD:4145128 NCBI chrNW_004955427:152,397...163,570
Ensembl chrNW_004955427:152,894...164,030
JBrowse link
G Ireb2 iron responsive element binding protein 2 acts_upstream_of_or_within ISO (PMID:15831703) MGI PMID:15831703 NCBI chrNW_004955450:852,554...898,908
Ensembl chrNW_004955450:852,554...900,011
JBrowse link
quercetin catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Lct lactase involved_in ISO (PMID:12594539) UniProt PMID:12594539 NCBI chrNW_004955440:3,148,730...3,197,110
Ensembl chrNW_004955440:3,148,730...3,197,110
JBrowse link
regulation of heme biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Srrd SRR1 domain containing involved_in ISO (MGI:6282940|PMID:28802827) UniProt PMID:28802827 MGI:6282940 NCBI chrNW_004955455:1,076,113...1,090,346
Ensembl chrNW_004955455:1,075,652...1,083,102
JBrowse link
G Tmem14c transmembrane protein 14C acts_upstream_of_or_within ISO (PMID:25157825) MGI PMID:25157825 NCBI chrNW_004955465:3,621,652...3,628,355
Ensembl chrNW_004955465:3,621,652...3,628,355
JBrowse link
regulation of melanin biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ctns cystinosin, lysosomal cystine transporter involved_in ISO (PMID:22649030) UniProt PMID:22649030 NCBI chrNW_004955467:13,151,663...13,169,005
Ensembl chrNW_004955467:13,151,957...13,168,696
JBrowse link
G Mfsd12 major facilitator superfamily domain containing 12 involved_in ISO (PMID:33208952)
(MGI:6492453|PMID:33208952)
(PMID:31117290)
UniProt PMID:31117290 PMID:33208952 MGI:6492453 NCBI chrNW_004955495:5,505,528...5,516,330
Ensembl chrNW_004955495:5,506,154...5,516,142
JBrowse link
G Slc7a11 solute carrier family 7 member 11 acts_upstream_of_or_within ISO (PMID:16037214) MGI PMID:16037214 NCBI chrNW_004955428:5,238,460...5,309,085
Ensembl chrNW_004955428:5,237,865...5,309,085
JBrowse link
rhodopsin metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Grk3 G protein-coupled receptor kinase 3 ISO RGD PMID:17573483 RGD:5685371 NCBI chrNW_004955442:19,640,145...19,785,803
Ensembl chrNW_004955442:19,640,145...19,785,803
JBrowse link
zeaxanthin biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Rpe65 retinoid isomerohydrolase RPE65 involved_in ISO (PMID:28874556) UniProt PMID:28874556 NCBI chrNW_004955423:23,184,326...23,208,206
Ensembl chrNW_004955423:23,183,937...23,208,282
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 12346
    metabolic process 7467
      pigment metabolic process 56
        anthocyanin-containing compound metabolic process + 0
        aurone metabolic process + 0
        flavone metabolic process + 2
        heme metabolic process + 26
        melanin metabolic process + 24
        phlobaphene metabolic process + 0
        pigment biosynthetic process + 45
        pigment catabolic process + 3
        pigment metabolic process involved in pigmentation + 3
paths to the root