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ONTOLOGY REPORT - ANNOTATIONS


Term:pigment metabolic process
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Accession:GO:0042440 term browser browse the term
Definition:The chemical reactions and pathways involving pigment, any general or particular coloring matter in living organisms, e.g. melanin.
Synonyms:exact_synonym: pigment metabolism


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adenine biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gart phosphoribosylglycinamide formyltransferase, phosphoribosylglycinamide synthetase, phosphoribosylaminoimidazole synthetase IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr11:31,780,477...31,805,728
Ensembl chr11:31,780,487...31,805,728
JBrowse link
adenine salvage term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Aprt adenine phosphoribosyl transferase ISO
IBA
MGI:MGI:2429961 (MGI:MGI:85816|PMID:8864750)
PMID:21873635
RGD PMID:8864750, PMID:21873635 MGI:MGI:85816, RGD:13792537 NCBI chr19:55,387,288...55,389,256
Ensembl chr19:55,387,288...55,389,256
JBrowse link
G Hprt1 hypoxanthine phosphoribosyltransferase 1 ISO
IBA
MGI:MGI:1857299 (MGI:MGI:1331314|PMID:10037486)
PMID:21873635
RGD PMID:10037486, PMID:21873635 MGI:MGI:1331314, RGD:13792537 NCBI chr  X:158,196,640...158,228,815
Ensembl chr  X:158,197,149...158,228,749
JBrowse link
G LOC103689983 hypoxanthine-guanine phosphoribosyltransferase IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr  X:158,623,231...158,655,277
Ensembl chr  X:158,623,240...158,655,198
JBrowse link
flavone metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ppargc1a PPARG coactivator 1 alpha IEP hesperetin RGD PMID:22767158 RGD:7242166 NCBI chr14:63,095,291...63,190,688
Ensembl chr14:63,095,720...63,187,009
JBrowse link
G Ugt1a1 UDP glucuronosyltransferase family 1 member A1 ISO (PMID:18052087) RGD PMID:18052087 NCBI chr 9:95,295,701...95,302,822
Ensembl chr 9:95,161,157...95,302,822
JBrowse link
G Ugt1a8 UDP glucuronosyltransferase family 1 member A8 ISO (PMID:18052087) RGD PMID:18052087 NCBI chr 9:95,221,474...95,302,822
Ensembl chr 9:95,161,157...95,302,822
JBrowse link
G Ugt1a9 UDP glucuronosyltransferase family 1 member A9 ISO (PMID:18052087) RGD PMID:18052087 NCBI chr 9:95,161,157...95,302,822
Ensembl chr 9:95,161,157...95,302,822
JBrowse link
guanine salvage term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Hprt1 hypoxanthine phosphoribosyltransferase 1 ISO
IBA
ISS
MGI:MGI:1857299 (MGI:MGI:1331314|PMID:10037486)
PMID:21873635
GO_REF:0000024
(PMID:19527031)
RGD
UniProt
PMID:10037486, PMID:19527031, PMID:21873635 GO_REF:0000024, MGI:MGI:1331314, RGD:13792537 NCBI chr  X:158,196,640...158,228,815
Ensembl chr  X:158,197,149...158,228,749
JBrowse link
G LOC103689983 hypoxanthine-guanine phosphoribosyltransferase ISS
IBA
GO_REF:0000024
PMID:21873635
UniProt PMID:21873635 GO_REF:0000024, RGD:13792537 NCBI chr  X:158,623,231...158,655,277
Ensembl chr  X:158,623,240...158,655,198
JBrowse link
G Prtfdc1 phosphoribosyl transferase domain containing 1 NOT ISO (PMID:21054786) RGD PMID:21054786 NCBI chr17:87,926,242...88,037,040
Ensembl chr17:87,927,058...88,037,040
JBrowse link
heme A biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cox10 cytochrome c oxidase assembly factor heme A:farnesyltransferase COX10 ISO (PMID:12928484)
(MGI:MGI:3604933|PMID:16103131), (MGI:MGI:3640032|PMID:16782876)
RGD PMID:12928484, PMID:16103131, PMID:16782876 MGI:MGI:3604933, MGI:MGI:3640032 NCBI chr10:50,439,778...50,563,920
Ensembl chr10:50,439,782...50,574,539
JBrowse link
G Cox15 cytochrome c oxidase assembly homolog COX15 ISO
IBA
UniProtKB:Q7KZN9-1 (PMID:12474143)
PMID:21873635
RGD PMID:12474143, PMID:21873635 RGD:13792537 NCBI chr 1:263,494,850...263,511,510
Ensembl chr 1:263,494,852...263,511,505
JBrowse link
heme biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Alad aminolevulinate dehydratase IDA
IBA
ISO
ISS
PMID:21873635
(MGI:MGI:53493|PMID:4959158), (MGI:MGI:53609|PMID:4981581), (MGI:MGI:63121|PMID:14050799)
GO_REF:0000024
(PMID:11032836)
RGD
UniProt
PMID:4959158, PMID:4981581, PMID:11032836, PMID:14050799, PMID:1764448, PMID:21873635 GO_REF:0000024, MGI:MGI:53493, MGI:MGI:53609, MGI:MGI:63121, RGD:1599020, RGD:13792537 NCBI chr 5:78,368,867...78,379,206
Ensembl chr 5:78,368,867...78,379,346
JBrowse link
G Alas1 5'-aminolevulinate synthase 1 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 8:114,927,704...114,941,038
Ensembl chr 8:114,927,722...114,940,177
JBrowse link
G Alas2 5'-aminolevulinate synthase 2 ISO
IBA
ISS
(MGI:MGI:3694153|PMID:9446639)
PMID:21873635
GO_REF:0000024
RGD
UniProt
PMID:9446639, PMID:21873635 GO_REF:0000024, MGI:MGI:3694153, RGD:13792537 NCBI chr  X:23,167,576...23,187,356
Ensembl chr  X:23,167,696...23,187,341
JBrowse link
G Atp5if1 ATP synthase inhibitory factor subunit 1 ISO
IBA
ISS
(PMID:23135403)
PMID:21873635
GO_REF:0000024
(MGI:MGI:5447588|PMID:23135403)
RGD
UniProt
PMID:23135403, PMID:21873635 GO_REF:0000024, MGI:MGI:5447588, RGD:13792537 NCBI chr 5:150,719,570...150,723,287
Ensembl chr 5:150,719,569...150,723,321
JBrowse link
G Cox10 cytochrome c oxidase assembly factor heme A:farnesyltransferase COX10 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr10:50,439,778...50,563,920
Ensembl chr10:50,439,782...50,574,539
JBrowse link
G Cpox coproporphyrinogen oxidase IDA
ISO
(MGI:MGI:77569|PMID:8407975) RGD PMID:8407975, PMID:3955059 MGI:MGI:77569, RGD:1600961 NCBI chr11:44,039,665...44,049,648
Ensembl chr11:44,039,669...44,049,648
JBrowse link
G Fech ferrochelatase IDA
IBA
ISO
PMID:21873635
(PMID:27599036)
MGI:MGI:1858114|MGI:MGI:2384729 (MGI:MGI:1327758|PMID:9989256), (MGI:MGI:3620268|PMID:16503645), (MGI:MGI:3696634|PMID:15496139), (MGI:MGI:3794459|PMID:16306232), (MGI:MGI:79136|PMID:8611576)
RGD PMID:8611576, PMID:9989256, PMID:15496139, PMID:16306232, PMID:16503645, PMID:27599036, PMID:3955059, PMID:21873635 MGI:MGI:1327758, MGI:MGI:3620268, MGI:MGI:3696634, MGI:MGI:3794459, MGI:MGI:79136, RGD:1600961, RGD:13792537 NCBI chr18:59,941,992...59,975,192
Ensembl chr18:59,941,992...59,975,192
JBrowse link
G Fxn frataxin IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 1:242,123,975...242,152,834
Ensembl chr 1:242,123,975...242,152,834
JBrowse link
G Hmbs hydroxymethylbilane synthase IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 8:48,667,278...48,674,673
Ensembl chr 8:48,667,275...48,674,748
JBrowse link
G Hnf1a HNF1 homeobox A ISO MGI:MGI:2384429 (MGI:MGI:1352605|PMID:10617683) RGD PMID:10617683 MGI:MGI:1352605 NCBI chr12:47,407,811...47,433,342
Ensembl chr12:47,407,811...47,433,342
JBrowse link
G Pgrmc1 progesterone receptor membrane component 1 ISS
ISO
IEA
GO_REF:0000024
(PMID:27599036)
GO_REF:0000107
UniProt
RGD
Ensembl
PMID:27599036 GO_REF:0000024, GO_REF:0000107 NCBI chr  X:123,205,869...123,213,880
Ensembl chr  X:123,205,869...123,213,882
JBrowse link
G Ppox protoporphyrinogen oxidase IDA
IBA
ISO
PMID:21873635
(PMID:7713909)
(MGI:MGI:3687447|PMID:3346226)
RGD PMID:3346226, PMID:7713909, PMID:3955059, PMID:21873635 MGI:MGI:3687447, RGD:1600961, RGD:13792537 NCBI chr13:89,650,094...89,654,998
Ensembl chr13:89,650,094...89,654,244
JBrowse link
G Slc11a2 solute carrier family 11 member 2 ISO
IEA
MGI:MGI:1856400 (MGI:MGI:3691553|PMID:11739192)
GO_REF:0000107
RGD
Ensembl
PMID:11739192 GO_REF:0000107, MGI:MGI:3691553 NCBI chr 7:142,025,812...142,062,892
Ensembl chr 7:142,025,815...142,063,212
JBrowse link
G Slc25a39 solute carrier family 25, member 39 IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr10:90,351,899...90,356,905
Ensembl chr10:90,351,900...90,356,242
JBrowse link
G Tmem14c transmembrane protein 14C IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr17:21,571,510...21,577,651
Ensembl chr17:21,571,518...21,577,631
JBrowse link
G Urod uroporphyrinogen decarboxylase NAS
IBA
ISO
IC
PMID:21873635
MGI:MGI:2687172 (MGI:MGI:3703836|PMID:17360334)
RGD PMID:17360334, PMID:3658690, PMID:21873635, PMID:15736160 MGI:MGI:3703836, RGD:70052, RGD:13792537, RGD:2301379 NCBI chr 5:135,855,429...135,859,515
Ensembl chr 5:135,855,433...135,859,643
JBrowse link
G Uros uroporphyrinogen III synthase ISO
IBA
(PMID:3805019)
PMID:21873635
RGD PMID:3805019, PMID:21873635 RGD:13792537 NCBI chr 1:205,755,766...205,778,170
Ensembl chr 1:205,756,640...205,777,167
JBrowse link
heme catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Blvra biliverdin reductase A IEA GO_REF:0000002
GO_REF:0000104
InterPro
UniProt
GO_REF:0000002, GO_REF:0000104 NCBI chr 3:119,552,550...119,577,796
Ensembl chr 3:119,561,290...119,577,806
JBrowse link
G Blvrb biliverdin reductase B ISO (PMID:7929092) RGD PMID:7929092 NCBI chr 1:84,256,063...84,273,726
Ensembl chr 1:84,256,159...84,274,075
JBrowse link
G Hmox1 heme oxygenase 1 IDA
IBA
ISO
PMID:21873635
(PMID:17915953)
RGD PMID:17915953, PMID:15226268, PMID:21873635 RGD:1547877, RGD:13792537 NCBI chr19:14,508,634...14,515,455
Ensembl chr19:14,508,616...14,515,456
JBrowse link
G Hmox2 heme oxygenase 2 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr10:10,990,034...11,035,493
Ensembl chr10:10,990,034...11,035,484
JBrowse link
G Hmox2-ps1 heme oxygenase (decycling) 2, pseudogene 1 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 2:215,370,196...215,372,406 JBrowse link
heme metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bdh2 3-hydroxybutyrate dehydrogenase 2 ISS GO_REF:0000024 UniProt GO_REF:0000024 NCBI chr 2:240,461,505...240,482,149
Ensembl chr 2:240,461,505...240,482,145
JBrowse link
G Cyp2a3 cytochrome P450, family 2, subfamily a, polypeptide 3 ISO (MGI:MGI:3607883|PMID:16183037) RGD PMID:16183037 MGI:MGI:3607883 NCBI chr 1:83,653,248...83,662,118
Ensembl chr 1:83,653,234...83,766,484
JBrowse link
G Fech ferrochelatase TAS RGD PMID:9113083 RGD:1598930 NCBI chr18:59,941,992...59,975,192
Ensembl chr18:59,941,992...59,975,192
JBrowse link
G Hmox1 heme oxygenase 1 ISO (MGI:MGI:3607883|PMID:16183037) RGD PMID:16183037 MGI:MGI:3607883 NCBI chr19:14,508,634...14,515,455
Ensembl chr19:14,508,616...14,515,456
JBrowse link
G Hpx hemopexin ISO
IBA
MGI:MGI:2447193 (MGI:MGI:3799398|PMID:18556779)
PMID:21873635
RGD PMID:18556779, PMID:21873635 MGI:MGI:3799398, RGD:13792537 NCBI chr 1:170,423,558...170,431,066
Ensembl chr 1:170,423,483...170,431,073
JBrowse link
G Slco1a6 solute carrier organic anion transporter family, member 1a6 IEA GO_REF:0000107 Ensembl GO_REF:0000107 NCBI chr 4:176,345,671...176,390,729
Ensembl chr 4:176,345,671...176,381,477
JBrowse link
G Urod uroporphyrinogen decarboxylase ISO MGI:MGI:2687172 (MGI:MGI:1929011|PMID:11134514) RGD PMID:11134514 MGI:MGI:1929011 NCBI chr 5:135,855,429...135,859,515
Ensembl chr 5:135,855,433...135,859,643
JBrowse link
heme O biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cox10 cytochrome c oxidase assembly factor heme A:farnesyltransferase COX10 IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr10:50,439,778...50,563,920
Ensembl chr10:50,439,782...50,574,539
JBrowse link
heme oxidation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Hmox1 heme oxygenase 1 ISO
IBA
(PMID:17915953)
PMID:21873635
RGD PMID:17915953, PMID:21873635 RGD:13792537 NCBI chr19:14,508,634...14,515,455
Ensembl chr19:14,508,616...14,515,456
JBrowse link
G Hmox2 heme oxygenase 2 TAS
IBA
PMID:21873635 RGD
GO_Central
PMID:12114211, PMID:21873635 RGD:625638, RGD:13792537 NCBI chr10:10,990,034...11,035,493
Ensembl chr10:10,990,034...11,035,484
JBrowse link
G Hmox2-ps1 heme oxygenase (decycling) 2, pseudogene 1 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 2:215,370,196...215,372,406 JBrowse link
hypoxanthine biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ada adenosine deaminase ISO MGI:MGI:1857117|MGI:MGI:2683027 (MGI:MGI:3640719|PMID:10720488) RGD PMID:10720488 MGI:MGI:3640719 NCBI chr 3:160,115,840...160,139,947
Ensembl chr 3:160,115,842...160,139,947
JBrowse link
G Prps1 phosphoribosyl pyrophosphate synthetase 1 ISO (PMID:17701896) RGD PMID:17701896 NCBI chr  X:111,798,233...111,820,270
Ensembl chr  X:111,798,233...111,820,266
JBrowse link
hypoxanthine salvage term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ada adenosine deaminase IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 3:160,115,840...160,139,947
Ensembl chr 3:160,115,842...160,139,947
JBrowse link
G Hprt1 hypoxanthine phosphoribosyltransferase 1 ISO
ISS
(PMID:19527031)
GO_REF:0000024
RGD
UniProt
PMID:19527031 GO_REF:0000024 NCBI chr  X:158,196,640...158,228,815
Ensembl chr  X:158,197,149...158,228,749
JBrowse link
G LOC103689983 hypoxanthine-guanine phosphoribosyltransferase ISS GO_REF:0000024 UniProt GO_REF:0000024 NCBI chr  X:158,623,231...158,655,277
Ensembl chr  X:158,623,240...158,655,198
JBrowse link
melanin biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Asip agouti signaling protein ISO MGI:MGI:1855937 (MGI:MGI:76308|PMID:7665913) RGD PMID:7665913 MGI:MGI:76308 NCBI chr 3:150,492,010...150,579,870
Ensembl chr 3:150,574,473...150,579,870
JBrowse link
G Cited1 Cbp/p300-interacting transactivator with Glu/Asp-rich carboxy-terminal domain 1 ISO
ISS
(MGI:MGI:4412464|PMID:11434569)
GO_REF:0000024
RGD
UniProt
PMID:11434569 GO_REF:0000024, MGI:MGI:4412464 NCBI chr  X:72,128,996...72,133,692
Ensembl chr  X:72,128,994...72,133,692
JBrowse link
G Dct dopachrome tautomerase ISO MGI:MGI:1856379 (MGI:MGI:76308|PMID:7665913) RGD PMID:7665913 MGI:MGI:76308 NCBI chr15:103,208,174...103,245,033
Ensembl chr15:103,208,258...103,244,494
JBrowse link
G Ddt D-dopachrome tautomerase IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr20:13,827,153...13,829,624
Ensembl chr20:13,827,132...13,831,588
JBrowse link
G Mc1r melanocortin 1 receptor ISO MGI:MGI:1856028 (MGI:MGI:76308|PMID:7665913) RGD PMID:7665913 MGI:MGI:76308 NCBI chr19:56,215,420...56,219,987 JBrowse link
G Myo5a myosin VA ISO
IEA
MGI:MGI:1856004 (MGI:MGI:76308|PMID:7665913)
GO_REF:0000107
RGD
Ensembl
PMID:7665913 GO_REF:0000107, MGI:MGI:76308 NCBI chr 8:82,038,966...82,156,507
Ensembl chr 8:82,037,977...82,156,617
JBrowse link
G Oca2 OCA2 melanosomal transmembrane protein ISO MGI:MGI:1856114 (MGI:MGI:1202196|PMID:9548375), (MGI:MGI:76308|PMID:7665913) RGD PMID:7665913, PMID:9548375 MGI:MGI:1202196, MGI:MGI:76308 NCBI chr 1:114,661,970...114,987,433
Ensembl chr 1:114,679,537...114,987,433
JBrowse link
G Pmel premelanosome protein ISO MGI:MGI:1857040 (MGI:MGI:76308|PMID:7665913) RGD PMID:7665913 MGI:MGI:76308 NCBI chr 7:3,133,347...3,143,827
Ensembl chr 7:3,133,506...3,143,911
JBrowse link
G Trpc1 transient receptor potential cation channel, subfamily C, member 1 ISO
IEA
(PMID:8126111)
GO_REF:0000107
RGD
Ensembl
PMID:8126111 GO_REF:0000107 NCBI chr 8:103,503,982...103,554,905
Ensembl chr 8:103,503,985...103,554,468
JBrowse link
G Tyr tyrosinase ISO
IBA
(PMID:8126111)
PMID:21873635
MGI:MGI:1855976|MGI:MGI:1855978 (MGI:MGI:1202196|PMID:9548375), (MGI:MGI:76308|PMID:7665913)
RGD PMID:7665913, PMID:8126111, PMID:9548375, PMID:21873635 MGI:MGI:1202196, MGI:MGI:76308, RGD:13792537 NCBI chr 1:151,012,598...151,106,802
Ensembl chr 1:151,012,598...151,106,802
JBrowse link
G Tyrp1 tyrosinase-related protein 1 IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 5:98,387,291...98,406,083
Ensembl chr 5:98,387,291...98,406,083
JBrowse link
melanin biosynthetic process from tyrosine term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dct dopachrome tautomerase ISO (MGI:MGI:3690794|PMID:2169885) RGD PMID:2169885 MGI:MGI:3690794 NCBI chr15:103,208,174...103,245,033
Ensembl chr15:103,208,258...103,244,494
JBrowse link
melanin metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bcl2 BCL2, apoptosis regulator ISO
IEA
MGI:MGI:2156165 (MGI:MGI:2154874|PMID:11709185)
GO_REF:0000107
RGD
Ensembl
PMID:11709185 GO_REF:0000107, MGI:MGI:2154874 NCBI chr13:26,605,426...26,769,374
Ensembl chr13:26,605,426...26,769,374
JBrowse link
G Myo5a myosin VA ISO MGI:MGI:1856004 (MGI:MGI:1202196|PMID:9548375) RGD PMID:9548375 MGI:MGI:1202196 NCBI chr 8:82,038,966...82,156,507
Ensembl chr 8:82,037,977...82,156,617
JBrowse link
G Tyrp1 tyrosinase-related protein 1 ISO MGI:MGI:1855960 (MGI:MGI:1202196|PMID:9548375) RGD PMID:9548375 MGI:MGI:1202196 NCBI chr 5:98,387,291...98,406,083
Ensembl chr 5:98,387,291...98,406,083
JBrowse link
G Vhl von Hippel-Lindau tumor suppressor ISO MGI:MGI:2136645 (MGI:MGI:5429122|PMID:22627278) RGD PMID:22627278 MGI:MGI:5429122 NCBI chr 4:145,580,869...145,587,835
Ensembl chr 4:145,580,799...145,587,845
JBrowse link
negative regulation of melanin biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Mfsd12 major facilitator superfamily domain containing 12 ISO (MGI:MGI:5912387|PMID:29025994) RGD PMID:29025994 MGI:MGI:5912387 NCBI chr 7:11,214,832...11,223,713
Ensembl chr 7:11,216,975...11,223,649
JBrowse link
G Opn3 opsin 3 ISO
IEA
(PMID:31097585)
GO_REF:0000107
RGD
Ensembl
PMID:31097585 GO_REF:0000107 NCBI chr13:93,716,481...93,746,994
Ensembl chr13:93,716,481...93,746,994
JBrowse link
G Rapgef2 Rap guanine nucleotide exchange factor 2 ISO
ISS
(MGI:MGI:5499726|PMID:16272156)
GO_REF:0000024
RGD
UniProt
PMID:16272156 GO_REF:0000024, MGI:MGI:5499726 NCBI chr 2:177,836,191...178,057,378
Ensembl chr 2:177,836,202...178,057,157
JBrowse link
G Slc24a5 solute carrier family 24 member 5 ISO (MGI:MGI:3775882|PMID:18166528) RGD PMID:18166528 MGI:MGI:3775882 NCBI chr 3:117,335,212...117,354,480
Ensembl chr 3:117,335,212...117,354,480
JBrowse link
G Wnt5a Wnt family member 5A ISO
IEA
(MGI:MGI:5619434|PMID:23569434)
GO_REF:0000107
RGD
Ensembl
PMID:23569434 GO_REF:0000107, MGI:MGI:5619434 NCBI chr16:4,469,451...4,490,271
Ensembl chr16:4,469,468...4,489,860
JBrowse link
pigment biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Sox2 SRY-box transcription factor 2 ISO MGI:MGI:2447996 (MGI:MGI:2181477|PMID:12036291) RGD PMID:12036291 MGI:MGI:2181477 NCBI chr 2:121,165,137...121,167,545
Ensembl chr 2:121,165,137...121,167,545
JBrowse link
positive regulation of heme biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Slc6a9 solute carrier family 6 member 9 IEA
ISO
GO_REF:0000107
(MGI:MGI:6450351|PMID:28495915)
Ensembl
RGD
PMID:28495915 GO_REF:0000107, MGI:MGI:6450351 NCBI chr 5:136,669,674...136,703,702
Ensembl chr 5:136,669,674...136,703,697
JBrowse link
positive regulation of melanin biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Appl1 adaptor protein, phosphotyrosine interacting with PH domain and leucine zipper 1 ISO (PMID:21291857) RGD PMID:21291857 NCBI chr16:2,560,103...2,602,035
Ensembl chr16:2,563,520...2,602,103
JBrowse link
G Asip agouti signaling protein ISO
IBA
UniProtKB:P07147|UniProtKB:Q60696 (MGI:MGI:5294257|PMID:21949658)
PMID:21873635
RGD PMID:21949658, PMID:21873635 MGI:MGI:5294257, RGD:13792537 NCBI chr 3:150,492,010...150,579,870
Ensembl chr 3:150,574,473...150,579,870
JBrowse link
G Cdh3 cadherin 3 ISO (PMID:23334344) RGD PMID:23334344 NCBI chr19:38,668,957...38,719,801
Ensembl chr19:38,669,230...38,719,677
JBrowse link
G Gipc1 GIPC PDZ domain containing family, member 1 ISS
ISO
GO_REF:0000024
(PMID:21291857)
UniProt
RGD
PMID:21291857 GO_REF:0000024 NCBI chr19:24,786,604...24,798,231
Ensembl chr19:24,786,628...24,798,233
JBrowse link
G Opn3 opsin 3 ISO
IEA
(PMID:28842328)
GO_REF:0000107
RGD
Ensembl
PMID:28842328 GO_REF:0000107 NCBI chr13:93,716,481...93,746,994
Ensembl chr13:93,716,481...93,746,994
JBrowse link
G Pmel premelanosome protein ISO (MGI:MGI:5294257|PMID:21949658) RGD PMID:21949658 MGI:MGI:5294257 NCBI chr 7:3,133,347...3,143,827
Ensembl chr 7:3,133,506...3,143,911
JBrowse link
G Tyrp1 tyrosinase-related protein 1 ISO (PMID:21996312)
UniProtKB:Q03288|UniProtKB:Q60696 (MGI:MGI:5294257|PMID:21949658)
RGD PMID:21949658, PMID:21996312 MGI:MGI:5294257 NCBI chr 5:98,387,291...98,406,083
Ensembl chr 5:98,387,291...98,406,083
JBrowse link
protoporphyrinogen IX biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Alad aminolevulinate dehydratase IEA GO_REF:0000041 UniProt GO_REF:0000041 NCBI chr 5:78,368,867...78,379,206
Ensembl chr 5:78,368,867...78,379,346
JBrowse link
G Alas1 5'-aminolevulinate synthase 1 IEA GO_REF:0000041 UniProt GO_REF:0000041 NCBI chr 8:114,927,704...114,941,038
Ensembl chr 8:114,927,722...114,940,177
JBrowse link
G Alas2 5'-aminolevulinate synthase 2 IEA GO_REF:0000041 UniProt GO_REF:0000041 NCBI chr  X:23,167,576...23,187,356
Ensembl chr  X:23,167,696...23,187,341
JBrowse link
G Cpox coproporphyrinogen oxidase IDA
IBA
IEA
PMID:21873635
GO_REF:0000041
UniProt PMID:3814086, PMID:21873635 GO_REF:0000041, RGD:4145128, RGD:13792537 NCBI chr11:44,039,665...44,049,648
Ensembl chr11:44,039,669...44,049,648
JBrowse link
G Hmbs hydroxymethylbilane synthase IEA GO_REF:0000041 UniProt GO_REF:0000041 NCBI chr 8:48,667,278...48,674,673
Ensembl chr 8:48,667,275...48,674,748
JBrowse link
G Ireb2 iron responsive element binding protein 2 ISO
IEA
MGI:MGI:2181660 (MGI:MGI:3695992|PMID:15831703)
GO_REF:0000107
RGD
Ensembl
PMID:15831703 GO_REF:0000107, MGI:MGI:3695992 NCBI chr 8:59,450,974...59,503,634
Ensembl chr 8:59,420,123...59,501,118
JBrowse link
G Ppox protoporphyrinogen oxidase IEA GO_REF:0000041 UniProt GO_REF:0000041 NCBI chr13:89,650,094...89,654,998
Ensembl chr13:89,650,094...89,654,244
JBrowse link
G Urod uroporphyrinogen decarboxylase IEA GO_REF:0000041 UniProt GO_REF:0000041 NCBI chr 5:135,855,429...135,859,515
Ensembl chr 5:135,855,433...135,859,643
JBrowse link
G Uros uroporphyrinogen III synthase IEA GO_REF:0000041 UniProt GO_REF:0000041 NCBI chr 1:205,755,766...205,778,170
Ensembl chr 1:205,756,640...205,777,167
JBrowse link
purine nucleobase biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ppat phosphoribosyl pyrophosphate amidotransferase IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr14:33,580,541...33,614,919
Ensembl chr14:33,580,541...33,614,919
JBrowse link
G Shmt1 serine hydroxymethyltransferase 1 ISO
IBA
(PMID:11516159)
PMID:21873635
RGD PMID:11516159, PMID:21873635 RGD:13792537 NCBI chr10:47,030,813...47,059,216
Ensembl chr10:47,031,050...47,059,216
JBrowse link
G Shmt2 serine hydroxymethyltransferase 2 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 7:70,824,718...70,829,822
Ensembl chr 7:70,824,715...70,829,815
JBrowse link
regulation of heme biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Srrd SRR1 domain containing ISO (MGI:MGI:6282940|PMID:28802827) RGD PMID:28802827 MGI:MGI:6282940 NCBI chr12:50,315,876...50,321,488
Ensembl chr12:50,315,933...50,321,144
JBrowse link
G Tmem14c transmembrane protein 14C ISO MGI:MGI:4351741 (MGI:MGI:5581691|PMID:25157825) RGD PMID:25157825 MGI:MGI:5581691 NCBI chr17:21,571,510...21,577,651
Ensembl chr17:21,571,518...21,577,631
JBrowse link
regulation of melanin biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Slc7a11 solute carrier family 7 member 11 ISO MGI:MGI:1857061 (MGI:MGI:3588610|PMID:16037214) RGD PMID:16037214 MGI:MGI:3588610 NCBI chr 2:139,453,774...139,528,479
Ensembl chr 2:139,453,774...139,528,162
JBrowse link
rhodopsin metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Grk3 G protein-coupled receptor kinase 3 IMP RGD PMID:17573483 RGD:5685371 NCBI chr12:49,626,871...49,750,389
Ensembl chr12:49,626,871...49,746,272
JBrowse link
xanthine biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ada adenosine deaminase ISO MGI:MGI:1857117|MGI:MGI:2683027 (MGI:MGI:3640719|PMID:10720488) RGD PMID:10720488 MGI:MGI:3640719 NCBI chr 3:160,115,840...160,139,947
Ensembl chr 3:160,115,842...160,139,947
JBrowse link
zeaxanthin biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Rpe65 retinoid isomerohydrolase RPE65 ISO
ISS
IBA
(PMID:28874556)
GO_REF:0000024
PMID:21873635
RGD
UniProt
PMID:28874556, PMID:21873635 GO_REF:0000024, RGD:13792537 NCBI chr 2:266,141,581...266,169,197
Ensembl chr 2:266,141,581...266,169,197
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 20027
    metabolic process 12278
      pigment metabolic process 69
        anthocyanin-containing compound metabolic process + 0
        aurone metabolic process + 0
        flavone metabolic process + 4
        heme metabolic process + 30
        melanin metabolic process + 22
        phlobaphene metabolic process + 0
        pigment biosynthetic process + 53
        pigment catabolic process + 5
        pigment metabolic process involved in pigmentation + 1
paths to the root

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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.