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ONTOLOGY REPORT - ANNOTATIONS


Term:indole-containing compound catabolic process
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Accession:GO:0042436 term browser browse the term
Definition:The chemical reactions and pathways resulting in the breakdown of compounds that contain an indole (2,3-benzopyrrole) skeleton.
Synonyms:exact_synonym: indole derivative catabolic process;   indole derivative catabolism;   indole-containing compound breakdown;   indole-containing compound catabolism;   indole-containing compound degradation


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tryptophan catabolic process term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ACMSD aminocarboxymuconate semialdehyde decarboxylase ISO RGD PMID:11802786 RGD:70243 NCBI chr15:17,121,950...17,164,005
Ensembl chr15:17,106,724...17,163,899
JBrowse link
G HAAO 3-hydroxyanthranilate 3,4-dioxygenase IEA UniProt GO_REF:0000104 NCBI chr 3:97,580,756...97,595,033
Ensembl chr 3:97,580,851...97,595,021
JBrowse link
G KMO kynurenine 3-monooxygenase IEA UniProt GO_REF:0000104 NCBI chr10:12,442,877...12,489,417
Ensembl chr10:12,431,982...12,490,409
JBrowse link
G KYNU kynureninase IEA UniProt GO_REF:0000104 NCBI chr15:8,847,335...8,982,951
Ensembl chr15:8,850,665...8,982,945
JBrowse link
tryptophan catabolic process to acetyl-CoA term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G KYNU kynureninase ISO RGD PMID:7236232 RGD:2303721 NCBI chr15:8,847,335...8,982,951
Ensembl chr15:8,850,665...8,982,945
JBrowse link
G TDO2 tryptophan 2,3-dioxygenase IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 8:44,708,722...44,725,954
Ensembl chr 8:44,708,746...44,740,980
JBrowse link
tryptophan catabolic process to kynurenine term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AFMID arylformamidase IEA
IBA
(PMID:21873635) UniProt
GO_Central
PMID:21873635 GO_REF:0000041 NCBI chr12:3,759,688...3,785,829
Ensembl chr12:3,759,708...3,785,836
JBrowse link
G IDO1 indoleamine 2,3-dioxygenase 1 IEA
IBA
(PMID:21873635) InterPro
GO_Central
PMID:21873635 GO_REF:0000002 NCBI chr17:9,245,283...9,260,140
Ensembl chr17:9,245,196...9,260,491
JBrowse link
G IDO2 indoleamine 2,3-dioxygenase 2 IEA
IBA
(PMID:21873635) Ensembl
GO_Central
PMID:21873635 GO_REF:0000107 NCBI chr17:9,277,039...9,344,405
Ensembl chr17:9,277,069...9,343,749
JBrowse link
G KYNU kynureninase IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr15:8,847,335...8,982,951
Ensembl chr15:8,850,665...8,982,945
JBrowse link
G TDO2 tryptophan 2,3-dioxygenase IEA UniProt
InterPro
GO_REF:0000002, GO_REF:0000041 NCBI chr 8:44,708,722...44,725,954
Ensembl chr 8:44,708,746...44,740,980
JBrowse link

Term paths to the root
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Term Annotations click to browse term
  biological_process 16548
    metabolic process 10584
      cellular metabolic process 9574
        cellular aromatic compound metabolic process 5098
          aromatic compound catabolic process 402
            indole-containing compound catabolic process 8
              brevianamide F catabolic process 0
              fumiquinazoline F catabolic process 0
              indolalkylamine catabolic process + 8
              indole catabolic process 0
              indole glucosinolate catabolic process 0
              indole phytoalexin catabolic process 0
              indoleacetic acid catabolic process 0
              melatonin catabolic process 0
              serotonin catabolic process 0
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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.