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ONTOLOGY REPORT - ANNOTATIONS


Term:indole-containing compound catabolic process
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Accession:GO:0042436 term browser browse the term
Definition:The chemical reactions and pathways resulting in the breakdown of compounds that contain an indole (2,3-benzopyrrole) skeleton.
Synonyms:exact_synonym: indole derivative catabolic process;   indole derivative catabolism;   indole-containing compound breakdown;   indole-containing compound catabolism;   indole-containing compound degradation


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tryptophan catabolic process term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Acmsd amino carboxymuconate semialdehyde decarboxylase ISO MGI GO_REF:0000096 MGI:4417868 NCBI chr 1:127,729,413...127,767,564
Ensembl chr 1:127,729,413...127,767,978
JBrowse link
G Afmid arylformamidase IEA UniProt GO_REF:0000004 MGI:1354194 NCBI chr11:117,825,503...117,839,908
Ensembl chr11:117,825,924...117,839,908
JBrowse link
G Ido1 indoleamine 2,3-dioxygenase 1 IEA UniProt GO_REF:0000004 MGI:1354194 NCBI chr 8:24,584,133...24,596,952
Ensembl chr 8:24,584,136...24,597,009
JBrowse link
G Ido2 indoleamine 2,3-dioxygenase 2 IEA UniProt GO_REF:0000004 MGI:1354194 NCBI chr 8:24,531,892...24,576,414
Ensembl chr 8:24,531,892...24,576,333
JBrowse link
G Kmo kynurenine 3-monooxygenase (kynurenine 3-hydroxylase) IEA UniProt GO_REF:0000002 MGI:2152098 NCBI chr 1:175,632,193...175,660,853
Ensembl chr 1:175,620,381...175,662,116
JBrowse link
G Kynu kynureninase ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr 2:43,555,258...43,683,048
Ensembl chr 2:43,555,329...43,682,715
JBrowse link
G Tdo2 tryptophan 2,3-dioxygenase IEA UniProt GO_REF:0000004 MGI:1354194 NCBI chr 3:81,958,412...81,975,728
Ensembl chr 3:81,957,090...81,976,202
JBrowse link
tryptophan catabolic process to acetyl-CoA term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Kynu kynureninase ISO MGI GO_REF:0000096 MGI:4417868 NCBI chr 2:43,555,258...43,683,048
Ensembl chr 2:43,555,329...43,682,715
JBrowse link
G Tdo2 tryptophan 2,3-dioxygenase ISO
IBA
(MGI:6201960|PMID:21873635) MGI
GO_Central
PMID:21873635 GO_REF:0000096 MGI:4417868 MGI:6201960 NCBI chr 3:81,958,412...81,975,728
Ensembl chr 3:81,957,090...81,976,202
JBrowse link
tryptophan catabolic process to kynurenine term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Afmid arylformamidase IDA
IBA
(MGI:3587527|PMID:15866519)
(MGI:6201960|PMID:21873635)
MGI
GO_Central
PMID:15866519 PMID:21873635 MGI:3587527 MGI:6201960 NCBI chr11:117,825,503...117,839,908
Ensembl chr11:117,825,924...117,839,908
JBrowse link
G Ido1 indoleamine 2,3-dioxygenase 1 IBA
IDA
ISO
(MGI:6201960|PMID:21873635)
(MGI:2151782|PMID:2419335), (MGI:2156954|PMID:11751753)
GO_Central
MGI
PMID:2419335 PMID:11751753 PMID:21873635 GO_REF:0000096 MGI:2151782 MGI:2156954 MGI:4417868 MGI:6201960 NCBI chr 8:24,584,133...24,596,952
Ensembl chr 8:24,584,136...24,597,009
JBrowse link
G Ido2 indoleamine 2,3-dioxygenase 2 IBA
ISO
IDA
IMP
(MGI:6201960|PMID:21873635)
(MGI:3712725|PMID:17499941)
(MGI:3719924|PMID:17671174)
GO_Central
MGI
PMID:17499941 PMID:17671174 PMID:21873635 GO_REF:0000096 MGI:3712725 MGI:3719924 MGI:4834177 MGI:6201960 NCBI chr 8:24,531,892...24,576,414
Ensembl chr 8:24,531,892...24,576,333
JBrowse link
G Kynu kynureninase IBA (MGI:6201960|PMID:21873635) GO_Central PMID:21873635 MGI:6201960 NCBI chr 2:43,555,258...43,683,048
Ensembl chr 2:43,555,329...43,682,715
JBrowse link
G Tdo2 tryptophan 2,3-dioxygenase ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr 3:81,958,412...81,975,728
Ensembl chr 3:81,957,090...81,976,202
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 23387
    metabolic process 11211
      cellular metabolic process 10029
        cellular aromatic compound metabolic process 5413
          aromatic compound catabolic process 435
            indole-containing compound catabolic process 7
              brevianamide F catabolic process 0
              fumiquinazoline F catabolic process 0
              indolalkylamine catabolic process + 7
              indole catabolic process 0
              indole glucosinolate catabolic process 0
              indole phytoalexin catabolic process 0
              indoleacetic acid catabolic process 0
              melatonin catabolic process 0
              serotonin catabolic process 0
paths to the root