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ONTOLOGY REPORT - ANNOTATIONS


Term:indole-containing compound biosynthetic process
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Accession:GO:0042435 term browser browse the term
Definition:The chemical reactions and pathways resulting in the formation of compounds that contain an indole (2,3-benzopyrrole) skeleton.
Synonyms:exact_synonym: indole derivative biosynthesis;   indole derivative biosynthetic process;   indole-containing compound anabolism;   indole-containing compound biosynthesis;   indole-containing compound formation;   indole-containing compound synthesis


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melatonin biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Aanat aralkylamine N-acetyltransferase involved_in TAS
IBA
IEA
ISO
ISS
PMID:21873635
GO_REF:0000041
(PMID:11313340)
GO_REF:0000024
UniProt
RGD
PMID:11313340 PMID:9054387 PMID:21873635 GO_REF:0000024 GO_REF:0000041, RGD:67926, RGD:13792537 NCBI chr10:101,827,072...101,831,805
Ensembl chr10:101,827,301...101,831,801
JBrowse link
G Asmt acetylserotonin O-methyltransferase acts_upstream_of_or_within
involved_in
IDA
ISO
IEA
IBA
(MGI:4442290|PMID:20308563), (MGI:56619|PMID:3941912)
(PMID:22775292)
GO_REF:0000041
PMID:21873635
RGD
UniProt
PMID:3941912 PMID:20308563 PMID:22775292 PMID:8930356 PMID:21873635 More... GO_REF:0000041 MGI:4442290 MGI:56619, RGD:1299464, RGD:13792537, RGD:1359073 NCBI chr12:16,304,719...16,309,568
Ensembl chr12:16,304,719...16,309,568
JBrowse link
serotonin biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ddc dopa decarboxylase involved_in IDA
IBA
PMID:21873635 RGD
GO_Central
PMID:10027744 PMID:21873635 RGD:5129182, RGD:13792537 NCBI chr14:86,378,685...86,469,189
Ensembl chr14:86,378,685...86,469,208
JBrowse link
G Tph1 tryptophan hydroxylase 1 involved_in ISS
ISO
GO_REF:0000024
(MGI:2683993|PMID:14697203)
UniProt
RGD
PMID:14697203 GO_REF:0000024 MGI:2683993 NCBI chr 1:97,157,375...97,178,415
Ensembl chr 1:97,157,409...97,178,344
JBrowse link
G Tph2 tryptophan hydroxylase 2 involved_in IEA GO_REF:0000041 UniProt GO_REF:0000041 NCBI chr 7:50,685,694...50,789,424
Ensembl chr 7:50,685,694...50,789,424
JBrowse link
serotonin biosynthetic process from tryptophan term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cyp2d4 cytochrome P450, family 2, subfamily d, polypeptide 4 IDA RGD PMID:23098818 RGD:11353778 NCBI chr 7:113,882,584...113,891,754
Ensembl chr 7:113,881,618...113,891,759
JBrowse link
G Tph1 tryptophan hydroxylase 1 TAS RGD PMID:12153488 RGD:625621 NCBI chr 1:97,157,375...97,178,415
Ensembl chr 1:97,157,409...97,178,344
JBrowse link

Term paths to the root
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Term Annotations click to browse term
  biological_process 19492
    metabolic process 11797
      biosynthetic process 6071
        cellular biosynthetic process 5913
          heterocycle biosynthetic process 3803
            indole-containing compound biosynthetic process 6
              brevianamide F biosynthetic process + 0
              fumiquinazoline F biosynthetic process 0
              indolalkylamine biosynthetic process + 0
              indole biosynthetic process 0
              indole glucosinolate biosynthetic process 0
              indole phytoalexin biosynthetic process + 0
              indoleacetic acid biosynthetic process + 0
              indoleacetic acid conjugate biosynthetic process + 0
              melatonin biosynthetic process 2
              psilocybin biosynthetic process 0
              serotonin biosynthetic process + 4
              tryprostatin A biosynthetic process 0
paths to the root