Send us a Message



 Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap)  (beta) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer) Overgo Probe Designer
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease COVID-19 Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models   new Genetic Models Autism Models PhenoMiner (Quantitative Phenotypes) Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes GERRC (Gene Editing Rat Resource Center) Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Poster Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources

ONTOLOGY REPORT - ANNOTATIONS

Term:indole-containing compound biosynthetic process
go back to main search page
Accession:GO:0042435 term browser browse the term
Definition:The chemical reactions and pathways resulting in the formation of compounds that contain an indole (2,3-benzopyrrole) skeleton.
Synonyms:exact_synonym: indole derivative biosynthesis;   indole derivative biosynthetic process;   indole-containing compound anabolism;   indole-containing compound biosynthesis;   indole-containing compound formation;   indole-containing compound synthesis


show annotations for term's descendants           Sort by:
melatonin biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Aanat aralkylamine N-acetyltransferase involved_in TAS
ISS
ISO
IEA
IBA		 GO_REF:0000024
(PMID:11313340)
GO_REF:0000041
PMID:21873635		 UniProt
RGD		 PMID:11313340 PMID:9054387 PMID:21873635 GO_REF:0000024 GO_REF:0000041, RGD:67926, RGD:13792537 NCBI chr10:101,827,072...101,831,805
Ensembl chr10:101,827,301...101,831,801 		JBrowse link
G Asmt acetylserotonin O-methyltransferase acts_upstream_of_or_within
involved_in		 IDA
ISO
IEA
IBA		 (MGI:4442290|PMID:20308563), (MGI:56619|PMID:3941912)
(PMID:22775292)
GO_REF:0000041
PMID:21873635		 RGD
UniProt		 PMID:3941912 PMID:20308563 PMID:22775292 PMID:8930356 PMID:21873635 More... GO_REF:0000041 MGI:4442290 MGI:56619, RGD:1299464, RGD:13792537, RGD:1359073 NCBI chr12:16,304,719...16,309,568
Ensembl chr12:16,304,719...16,309,568 		JBrowse link
regulation of serotonin biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Aldh2 aldehyde dehydrogenase 2 family member involved_in ISS
ISO		 GO_REF:0000024
(MGI:6827320|PMID:26711020)		 UniProt
RGD		 PMID:26711020 GO_REF:0000024 MGI:6827320 NCBI chr12:34,949,549...34,982,527
Ensembl chr12:34,901,219...34,982,521 		JBrowse link
serotonin biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ddc dopa decarboxylase involved_in IDA
IBA		 PMID:21873635 RGD
GO_Central		 PMID:10027744 PMID:21873635 RGD:5129182, RGD:13792537 NCBI chr14:86,378,685...86,469,189
Ensembl chr14:86,378,685...86,469,208 		JBrowse link
G Tph1 tryptophan hydroxylase 1 involved_in ISS
ISO		 GO_REF:0000024
(MGI:2683993|PMID:14697203)		 UniProt
RGD		 PMID:14697203 GO_REF:0000024 MGI:2683993 NCBI chr 1:97,157,375...97,178,415
Ensembl chr 1:97,157,409...97,178,344 		JBrowse link
G Tph2 tryptophan hydroxylase 2 involved_in IEA GO_REF:0000041 UniProt GO_REF:0000041 NCBI chr 7:50,685,694...50,789,424
Ensembl chr 7:50,685,694...50,789,424 		JBrowse link
serotonin biosynthetic process from tryptophan term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cyp2d4 cytochrome P450, family 2, subfamily d, polypeptide 4 IDA RGD PMID:23098818 RGD:11353778 NCBI chr 7:113,882,584...113,891,754
Ensembl chr 7:113,881,618...113,891,759 		JBrowse link
G Tph1 tryptophan hydroxylase 1 TAS RGD PMID:12153488 RGD:625621 NCBI chr 1:97,157,375...97,178,415
Ensembl chr 1:97,157,409...97,178,344 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 19818
    metabolic process 12096
      biosynthetic process 6307
        cellular biosynthetic process 2928
          heterocycle biosynthetic process 834
            indole-containing compound biosynthetic process 7
              brevianamide F biosynthetic process 0
              indolalkylamine biosynthetic process + 0
              indole biosynthetic process 0
              indole glucosinolate biosynthetic process 0
              indole phytoalexin biosynthetic process + 0
              indoleacetic acid biosynthetic process + 0
              indoleacetic acid conjugate biosynthetic process + 0
              melatonin biosynthetic process 2
              psilocybin biosynthetic process 0
              serotonin biosynthetic process + 5
              tryprostatin A biosynthetic process 0
paths to the root