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ONTOLOGY REPORT - ANNOTATIONS


Term:cellular modified amino acid biosynthetic process
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Accession:GO:0042398 term browser browse the term
Definition:The chemical reactions and pathways resulting in the formation of compounds derived from amino acids, organic acids containing one or more amino substituents.
Synonyms:exact_synonym: amino acid derivative biosynthetic process;   cellular amino acid derivative anabolism;   cellular amino acid derivative biosynthesis;   cellular amino acid derivative biosynthetic process;   cellular amino acid derivative formation;   cellular amino acid derivative synthesis;   cellular modified amino acid anabolism;   cellular modified amino acid biosynthesis;   cellular modified amino acid formation;   cellular modified amino acid synthesis


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10-formyltetrahydrofolate biosynthetic process term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Mthfd1 methylenetetrahydrofolate dehydrogenase, cyclohydrolase and formyltetrahydrofolate synthetase 1 ISO (PMID:1881876)
(MGI:5503248|PMID:23704330)
BHF-UCL PMID:1881876, PMID:23704330 MGI:5503248 NCBI chrNW_004936495:8,100,977...8,170,244 JBrowse link
G Mthfd1l methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1 like ISO (PMID:12937168) BHF-UCL PMID:12937168 NCBI chrNW_004936489:3,877,423...4,060,129 JBrowse link
carnitine biosynthetic process term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Acadm acyl-CoA dehydrogenase medium chain ISO (PMID:16972171) BHF-UCL PMID:16972171 NCBI chrNW_004936571:2,761,254...2,797,045 JBrowse link
G Bbox1 gamma-butyrobetaine hydroxylase 1 ISO (PMID:20599753), (PMID:9753662) UniProtKB PMID:9753662, PMID:20599753 NCBI chrNW_004936540:6,048,481...6,113,627 JBrowse link
G Tmlhe trimethyllysine hydroxylase, epsilon ISO (PMID:15754339)
(MGI:2183690|PMID:12121276)
(PMID:23092983)
BHF-UCL
MGI
UniProtKB
PMID:12121276, PMID:15754339, PMID:23092983 MGI:2183690 NCBI chrNW_004936958:64,713...113,627 JBrowse link
creatine biosynthetic process term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gamt guanidinoacetate N-methyltransferase ISO (PMID:8651275)
(MGI:3043413|PMID:15028668)
UniProtKB
MGI
RGD
PMID:8651275, PMID:15028668, PMID:15533043 MGI:3043413, RGD:1359081 NCBI chrNW_004936588:721,436...724,475 JBrowse link
G Gatm glycine amidinotransferase ISO (PMID:9218780) MGI PMID:9218780 NCBI chrNW_004936471:8,017,611...8,032,703 JBrowse link
glutathione biosynthetic process term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gclc glutamate-cysteine ligase catalytic subunit ISO (PMID:10395918), (PMID:8104187), (PMID:9675072)
(MGI:1858542|PMID:10805773)
(MGI:3607629|PMID:16081425)
(PMID:12663448)
UniProt
MGI
RGD
UniProtKB
PMID:8104187, PMID:9675072, PMID:10395918, PMID:10805773, PMID:12663448, PMID:16081425, PMID:16183645 MGI:1858542, MGI:3607629, RGD:1582661 NCBI chrNW_004936476:7,371,270...7,418,756 JBrowse link
G Gclm glutamate-cysteine ligase modifier subunit ISO (MGI:3607629|PMID:16081425)
(PMID:12081989)
(PMID:10395918), (PMID:9675072)
RGD
MGI
UniProtKB
UniProt
PMID:9675072, PMID:10395918, PMID:12081989, PMID:16081425, PMID:16183645 MGI:3607629, RGD:1582661 NCBI chrNW_004936537:5,356,914...5,378,998 JBrowse link
G Ggt1 gamma-glutamyltransferase 1 ISO (MGI:5294309|PMID:12468440) UniProt PMID:12468440 MGI:5294309 NCBI chrNW_004936619:762,278...791,610 JBrowse link
G Gss glutathione synthetase ISO RGD PMID:10964706 RGD:1599340 NCBI chrNW_004936561:5,765,637...5,793,951 JBrowse link
G Hagh hydroxyacylglutathione hydrolase ISO (PMID:8550579) UniProtKB PMID:8550579 NCBI chrNW_004936694:2,181,475...2,200,469 JBrowse link
G Mgst2 microsomal glutathione S-transferase 2 ISO (PMID:8703034) UniProtKB PMID:8703034 NCBI chrNW_004936535:7,995,185...8,015,463 JBrowse link
hydroxylysine biosynthetic process term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Plod2 procollagen-lysine,2-oxoglutarate 5-dioxygenase 2 ISO (PMID:10934207) CAFA PMID:10934207 NCBI chrNW_004936519:9,053,192...9,139,221 JBrowse link
G Plod3 procollagen-lysine,2-oxoglutarate 5-dioxygenase 3 ISO (MGI:6202004|PMID:16447251) UniProt PMID:16447251 MGI:6202004 NCBI chrNW_004936543:1,090,268...1,097,170 JBrowse link
phosphatidylserine biosynthetic process term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Plscr1 phospholipid scramblase 1 ISO (MGI:5284813|PMID:12509439) UniProt PMID:12509439 MGI:5284813 NCBI chrNW_004936519:8,759,702...8,790,823 JBrowse link
G Ptdss1 phosphatidylserine synthase 1 ISO (PMID:19014349) FlyBase PMID:19014349 NCBI chrNW_004936470:46,209,700...46,275,305 JBrowse link
G Ptdss2 phosphatidylserine synthase 2 ISO (PMID:19014349)
(MGI:2446765|PMID:12361952)
FlyBase
MGI
PMID:12361952, PMID:19014349 MGI:2446765 NCBI chrNW_004936888:306,292...349,365 JBrowse link
G Slc27a1 solute carrier family 27 member 1 ISO (PMID:19523918) UniProtKB PMID:19523918 NCBI chrNW_004936596:3,426,807...3,451,259 JBrowse link
phosphocreatine biosynthetic process term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ckm creatine kinase, M-type ISO (MGI:3513707|PMID:15601660) RGD
MGI
PMID:12069495, PMID:15601660 MGI:3513707, RGD:1359082 NCBI chrNW_004936706:1,792,298...1,801,063 JBrowse link
positive regulation of glutathione biosynthetic process term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Eif2ak3 eukaryotic translation initiation factor 2 alpha kinase 3 ISO (MGI:5616326|PMID:14978030) ParkinsonsUK-UCL PMID:14978030 MGI:5616326 NCBI chrNW_004936712:413,602...454,443 JBrowse link
G Nfe2l2 nuclear factor, erythroid 2 like 2 ISO (MGI:5616326|PMID:14978030) ParkinsonsUK-UCL PMID:14978030 MGI:5616326 NCBI chrNW_004936509:6,589,967...6,621,171 JBrowse link
positive regulation of L-dopa biosynthetic process term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Park7 Parkinsonism associated deglycase ISO (PMID:16731528) ParkinsonsUK-UCL PMID:16731528 NCBI chrNW_004936623:2,422,780...2,436,817 JBrowse link
regulation of glutathione biosynthetic process term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Slc7a11 solute carrier family 7 member 11 ISO (MGI:3588610|PMID:16037214) MGI PMID:16037214 MGI:3588610 NCBI chrNW_004936535:9,177,305...9,242,743 JBrowse link
tetrahydrofolate biosynthetic process term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Atic 5-aminoimidazole-4-carboxamide ribonucleotide formyltransferase/IMP cyclohydrolase ISO RGD PMID:7057182 RGD:2301991 NCBI chrNW_004936586:1,782,581...1,809,458 JBrowse link
G Dhfr dihydrofolate reductase ISO (PMID:2303423) RGD
BHF-UCL
PMID:2303423, PMID:11502523 RGD:1298877 NCBI chrNW_004936469:67,962...83,116 JBrowse link
G Gart phosphoribosylglycinamide formyltransferase, phosphoribosylglycinamide synthetase, phosphoribosylaminoimidazole synthetase ISO RGD PMID:4078017 RGD:2301990 NCBI chrNW_004936500:8,750,928...8,782,303 JBrowse link
tetrahydrofolylpolyglutamate biosynthetic process term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Fpgs folylpolyglutamate synthase ISO (PMID:25164808), (PMID:3619447) BHF-UCL PMID:3619447, PMID:25164808 NCBI chrNW_004936487:15,453,010...15,466,591 JBrowse link

Term paths to the root
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  biological_process 12002
    metabolic process 7668
      nitrogen compound metabolic process 6467
        organonitrogen compound metabolic process 4491
          organonitrogen compound biosynthetic process 1010
            cellular modified amino acid biosynthetic process 28
              (3-aminopropyl)(L-aspartyl-1-amino)phosphoryl-5'-adenosine biosynthetic process from asparagine 0
              4-hydroxyproline biosynthetic process 0
              L-dopa biosynthetic process + 1
              O3-(N-acetylglucosamine-1-phosphoryl)-L-serine biosynthetic process 0
              S-methylmethionine biosynthetic process 0
              aerobactin biosynthetic process 0
              amino-acid betaine biosynthetic process + 3
              cellular modified histidine biosynthetic process + 0
              coenzyme B biosynthetic process 0
              creatine biosynthetic process 2
              folic acid-containing compound biosynthetic process + 6
              glutathione biosynthetic process + 9
              hydroxylysine biosynthetic process 2
              lincomycin biosynthetic process 0
              ochratoxin A biosynthetic process 0
              pantothenate biosynthetic process 0
              peptidyl-1-thioglycine biosynthetic process from peptidyl-glycine + 0
              peptidyl-glycine cholesteryl ester biosynthesis from peptidyl-glycine 0
              phosphagen biosynthetic process + 1
              phosphatidylserine biosynthetic process + 4
              prenylcysteine biosynthetic process 0
              pyrrolysine biosynthetic process 0
              sarcosine biosynthetic process 0
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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.