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ONTOLOGY REPORT - ANNOTATIONS


Term:cellular modified amino acid biosynthetic process
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Accession:GO:0042398 term browser browse the term
Definition:The chemical reactions and pathways resulting in the formation of compounds derived from amino acids, organic acids containing one or more amino substituents.
Synonyms:exact_synonym: amino acid derivative biosynthetic process;   cellular amino acid derivative anabolism;   cellular amino acid derivative biosynthesis;   cellular amino acid derivative biosynthetic process;   cellular amino acid derivative formation;   cellular amino acid derivative synthesis;   cellular modified amino acid anabolism;   cellular modified amino acid biosynthesis;   cellular modified amino acid formation;   cellular modified amino acid synthesis


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10-formyltetrahydrofolate biosynthetic process term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Mthfd1 methylenetetrahydrofolate dehydrogenase, cyclohydrolase and formyltetrahydrofolate synthetase 1 ISO (PMID:1881876)
(MGI:5503248|PMID:23704330)
RGD PMID:1881876, PMID:23704330 MGI:5503248 NCBI chr 6:99,282,850...99,350,367
Ensembl chr 6:99,282,850...99,350,340
JBrowse link
G Mthfd1l methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1-like ISO (PMID:12937168) RGD PMID:12937168 NCBI chr 1:40,529,092...40,719,232
Ensembl chr 1:40,529,045...40,719,391
JBrowse link
carnitine biosynthetic process term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Acadm acyl-CoA dehydrogenase medium chain ISO (PMID:16972171) RGD PMID:16972171 NCBI chr 2:260,124,418...260,148,589
Ensembl chr 2:260,124,418...260,148,589
JBrowse link
G Aldh9a1 aldehyde dehydrogenase 9 family, member A1 TAS
IEA
GO_REF:0000041 UniProt PMID:10702312 GO_REF:0000041, RGD:68317 NCBI chr13:85,580,828...85,597,497
Ensembl chr13:85,580,828...85,597,493
JBrowse link
G Bbox1 gamma-butyrobetaine hydroxylase 1 TAS
IBA
ISO
ISS
IEA
PMID:21873635
(PMID:20599753), (PMID:9753662)
GO_REF:0000024
GO_REF:0000041
RGD
UniProt
PMID:9753662, PMID:20599753, PMID:10526231, PMID:21873635, PMID:9753662 GO_REF:0000024, GO_REF:0000041, RGD:632240, RGD:13792537, RGD:8554503 NCBI chr 3:101,425,684...101,474,848
Ensembl chr 3:101,427,055...101,474,890
JBrowse link
G Tmlhe trimethyllysine hydroxylase, epsilon TAS
ISO
IBA
ISS
IEA
(MGI:2183690|PMID:12121276)
PMID:21873635
(PMID:15754339), (PMID:23092983)
GO_REF:0000024
GO_REF:0000041
RGD
UniProt
PMID:12121276, PMID:15754339, PMID:23092983, PMID:11431483, PMID:21873635 GO_REF:0000024, GO_REF:0000041, MGI:2183690, RGD:70558, RGD:13792537 NCBI chr20:237,461...285,125
Ensembl chr20:237,506...284,943
JBrowse link
creatine biosynthetic process term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gamt guanidinoacetate N-methyltransferase IDA
ISO
IBA
IEA
TAS
MGI:3044282 (MGI:3043413|PMID:15028668)
PMID:21873635
(PMID:8651275)
GO_REF:0000041
RGD
UniProt
PMID:8651275, PMID:15028668, PMID:15533043, PMID:21873635, PMID:12079381 GO_REF:0000041, MGI:3043413, RGD:1359081, RGD:13792537, RGD:632754 NCBI chr 7:12,314,848...12,317,998
Ensembl chr 7:12,314,848...12,317,998
JBrowse link
G Gatm glycine amidinotransferase TAS
IBA
IEA
ISO
PMID:21873635
GO_REF:0000041
(PMID:9218780)
UniProt
RGD
PMID:9218780, PMID:8021264, PMID:21873635 GO_REF:0000041, RGD:70746, RGD:13792537 NCBI chr 3:114,711,570...114,728,155
Ensembl chr 3:114,711,562...114,728,410
JBrowse link
folic acid-containing compound biosynthetic process term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Fpgs folylpolyglutamate synthase IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 3:11,717,667...11,729,694
Ensembl chr 3:11,717,667...11,723,327
JBrowse link
G Mthfs methenyltetrahydrofolate synthetase IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 8:96,564,877...96,614,386
Ensembl chr 8:96,564,877...96,614,348
JBrowse link
glutathione biosynthetic process term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gclc glutamate-cysteine ligase, catalytic subunit IMP
ISO
IBA
ISS
IEA
MGI:2387010 (MGI:1858542|PMID:10805773), (MGI:3607629|PMID:16081425)
(PMID:10395918), (PMID:12663448), (PMID:8104187), (PMID:9675072)
PMID:21873635
GO_REF:0000024
GO_REF:0000041
RGD
UniProt
PMID:8104187, PMID:9675072, PMID:10395918, PMID:10805773, PMID:12663448, PMID:16081425, PMID:16183645, PMID:21873635 GO_REF:0000024, GO_REF:0000041, MGI:1858542, MGI:3607629, RGD:1582661, RGD:13792537 NCBI chr 8:85,059,051...85,097,471
Ensembl chr 8:85,059,051...85,097,468
JBrowse link
G Gclm glutamate cysteine ligase, modifier subunit IMP
ISO
IBA
ISS
IEA
(MGI:3607629|PMID:16081425)
(PMID:10395918), (PMID:12081989), (PMID:9675072)
PMID:21873635
GO_REF:0000024
GO_REF:0000041
RGD
UniProt
PMID:9675072, PMID:10395918, PMID:12081989, PMID:16081425, PMID:16183645, PMID:21873635 GO_REF:0000024, GO_REF:0000041, MGI:3607629, RGD:1582661, RGD:13792537 NCBI chr 2:225,827,504...225,847,876
Ensembl chr 2:225,827,504...225,847,874
JBrowse link
G Ggt1 gamma-glutamyltransferase 1 IEA
ISO
GO_REF:0000043
(MGI:5294309|PMID:12468440)
UniProt
RGD
PMID:12468440 GO_REF:0000043, MGI:5294309 NCBI chr20:14,019,723...14,045,781
Ensembl chr20:14,019,723...14,025,068
JBrowse link
G Ggt5 gamma-glutamyltransferase 5 IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr20:13,988,444...14,001,296 JBrowse link
G Ggt6 gamma-glutamyl transferase 6 IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr10:58,995,253...58,998,431
Ensembl chr10:58,995,556...58,998,033
JBrowse link
G Ggt7 gamma-glutamyltransferase 7 IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 3:151,005,960...151,029,941
Ensembl chr 3:151,006,531...151,032,302
JBrowse link
G Gss glutathione synthetase IDA
IEA
GO_REF:0000041 UniProt PMID:10964706 GO_REF:0000041, RGD:1599340 NCBI chr 3:151,076,254...151,106,557
Ensembl chr 3:151,076,254...151,106,557
JBrowse link
G Hagh hydroxyacyl glutathione hydrolase IEA
ISO
GO_REF:0000107
(PMID:8550579)
Ensembl
RGD
PMID:8550579 GO_REF:0000107 NCBI chr10:14,215,913...14,230,506
Ensembl chr10:14,216,155...14,230,515
JBrowse link
G Mgst2 microsomal glutathione S-transferase 2 ISO (PMID:8703034) RGD PMID:8703034 NCBI chr 2:140,708,396...140,727,381
Ensembl chr 2:140,708,397...140,727,281
JBrowse link
glycine betaine biosynthetic process from choline term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Aldh7a1 aldehyde dehydrogenase 7 family, member A1 IEA GO_REF:0000041 UniProt GO_REF:0000041 NCBI chr18:51,619,007...51,651,267
Ensembl chr18:51,619,007...51,651,267
JBrowse link
G Chdh choline dehydrogenase IEA GO_REF:0000041 UniProt GO_REF:0000041 NCBI chr16:6,078,083...6,109,386
Ensembl chr16:6,078,122...6,109,382
JBrowse link
hydroxylysine biosynthetic process term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Plod2 procollagen lysine, 2-oxoglutarate 5-dioxygenase 2 IEA
ISO
GO_REF:0000107
(PMID:10934207)
Ensembl
RGD
PMID:10934207 GO_REF:0000107 NCBI chr 8:99,977,334...100,059,736
Ensembl chr 8:99,977,334...100,059,736
JBrowse link
G Plod3 procollagen-lysine, 2-oxoglutarate 5-dioxygenase 3 ISO (MGI:6202004|PMID:16447251) RGD PMID:16447251 MGI:6202004 NCBI chr12:22,716,421...22,726,982
Ensembl chr12:22,716,423...22,726,982
JBrowse link
phosphatidylserine biosynthetic process term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Plscr1 phospholipid scramblase 1 IEA
ISO
GO_REF:0000107
(MGI:5284813|PMID:12509439)
Ensembl
RGD
PMID:12509439 GO_REF:0000107, MGI:5284813 NCBI chr 8:99,625,523...99,645,882
Ensembl chr 8:99,625,545...99,725,217
JBrowse link
G Ptdss1 phosphatidylserine synthase 1 IEA
ISO
GO_REF:0000041
(PMID:19014349)
UniProt
RGD
PMID:19014349 GO_REF:0000041 NCBI chr 7:71,294,140...71,356,153
Ensembl chr 7:71,293,388...71,356,153
JBrowse link
G Ptdss2 phosphatidylserine synthase 2 IEA
ISO
GO_REF:0000041
MGI:2447151 (MGI:2446765|PMID:12361952)
(PMID:19014349)
UniProt
RGD
PMID:12361952, PMID:19014349 GO_REF:0000041, MGI:2446765 NCBI chr 1:214,122,981...214,148,011
Ensembl chr 1:214,123,044...214,149,729
JBrowse link
G Slc27a1 solute carrier family 27 member 1 IEA
IBA
ISO
GO_REF:0000107
PMID:21873635
(PMID:19523918)
Ensembl
RGD
PMID:19523918, PMID:21873635 GO_REF:0000107, RGD:13792537 NCBI chr16:19,997,823...20,016,193
Ensembl chr16:19,999,112...20,016,190
JBrowse link
phosphocreatine biosynthetic process term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ckb creatine kinase B IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 6:136,142,956...136,145,838
Ensembl chr 6:136,142,956...136,145,837
JBrowse link
G Ckm creatine kinase, M-type TAS
ISO
IBA
IEA
IDA
(MGI:3513707|PMID:15601660)
PMID:21873635
GO_REF:0000107
RGD
Ensembl
PMID:15601660, PMID:6209281, PMID:21873635, PMID:12069495 GO_REF:0000107, MGI:3513707, RGD:727227, RGD:13792537, RGD:1359082 NCBI chr 1:80,321,507...80,331,841
Ensembl chr 1:80,321,585...80,331,841
JBrowse link
G Ckmt1 creatine kinase, mitochondrial 1 IBA
IEA
PMID:21873635
GO_REF:0000002
InterPro PMID:21873635 GO_REF:0000002, RGD:13792537 NCBI chr 3:113,318,559...113,324,459
Ensembl chr 3:113,318,563...113,324,461
JBrowse link
G Ckmt2 creatine kinase, mitochondrial 2 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 2:21,422,680...21,452,797
Ensembl chr 2:21,422,818...21,437,193
JBrowse link
positive regulation of glutathione biosynthetic process term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Eif2ak3 eukaryotic translation initiation factor 2 alpha kinase 3 ISO (MGI:5616326|PMID:14978030) RGD PMID:14978030 MGI:5616326 NCBI chr 4:98,648,513...98,709,695
Ensembl chr 4:98,648,545...98,709,694
JBrowse link
G Nfe2l2 nuclear factor, erythroid 2-like 2 ISO (MGI:5616326|PMID:14978030) RGD PMID:14978030 MGI:5616326 NCBI chr 3:62,497,568...62,525,146
Ensembl chr 3:62,497,571...62,524,996
JBrowse link
positive regulation of L-dopa biosynthetic process term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Park7 Parkinsonism associated deglycase ISO
ISS
IEA
(PMID:16731528)
GO_REF:0000024
GO_REF:0000107
RGD
ParkinsonsUK-UCL
Ensembl
PMID:16731528 GO_REF:0000024, GO_REF:0000107 NCBI chr 5:167,982,438...168,004,724
Ensembl chr 5:167,982,439...168,004,724
JBrowse link
regulation of glutathione biosynthetic process term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Slc7a11 solute carrier family 7 member 11 ISO MGI:1857061 (MGI:3588610|PMID:16037214) RGD PMID:16037214 MGI:3588610 NCBI chr 2:139,453,774...139,528,479
Ensembl chr 2:139,453,774...139,528,162
JBrowse link
tetrahydrofolate biosynthetic process term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Aldh1l1 aldehyde dehydrogenase 1 family, member L1 TAS RGD PMID:14729668 RGD:1547843 NCBI chr 4:123,516,553...123,564,067
Ensembl chr 4:123,516,788...123,557,501
JBrowse link
G Atic 5-aminoimidazole-4-carboxamide ribonucleotide formyltransferase/IMP cyclohydrolase IDA RGD PMID:7057182 RGD:2301991 NCBI chr 9:78,862,013...78,882,061
Ensembl chr 9:78,862,013...78,882,060
JBrowse link
G Dhfr dihydrofolate reductase IDA
IBA
ISO
IEA
PMID:21873635
(PMID:2303423)
GO_REF:0000041
RGD
UniProt
PMID:2303423, PMID:11502523, PMID:21873635 GO_REF:0000041, RGD:1298877, RGD:13792537 NCBI chr 2:21,931,887...21,958,927
Ensembl chr 2:21,931,493...21,962,453
JBrowse link
G Gart phosphoribosylglycinamide formyltransferase, phosphoribosylglycinamide synthetase, phosphoribosylaminoimidazole synthetase IDA RGD PMID:4078017 RGD:2301990 NCBI chr11:31,780,477...31,805,728
Ensembl chr11:31,780,487...31,805,728
JBrowse link
G Gch1 GTP cyclohydrolase 1 IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr15:23,935,011...23,968,971
Ensembl chr15:23,934,585...23,969,011
JBrowse link
tetrahydrofolylpolyglutamate biosynthetic process term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Fpgs folylpolyglutamate synthase ISO
IEA
IBA
(PMID:25164808), (PMID:3619447)
GO_REF:0000041
PMID:21873635
RGD
UniProt
PMID:3619447, PMID:25164808, PMID:21873635 GO_REF:0000041, RGD:13792537 NCBI chr 3:11,717,667...11,729,694
Ensembl chr 3:11,717,667...11,723,327
JBrowse link

Term paths to the root
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Term Annotations click to browse term
  biological_process 20020
    metabolic process 12263
      nitrogen compound metabolic process 10347
        organonitrogen compound metabolic process 7134
          organonitrogen compound biosynthetic process 2020
            cellular modified amino acid biosynthetic process 40
              (3-aminopropyl)(L-aspartyl-1-amino)phosphoryl-5'-adenosine biosynthetic process from asparagine 0
              4-hydroxyproline biosynthetic process 0
              L-dopa biosynthetic process + 1
              O3-(N-acetylglucosamine-1-phosphoryl)-L-serine biosynthetic process 0
              S-methylmethionine biosynthetic process 0
              aerobactin biosynthetic process 0
              amino-acid betaine biosynthetic process + 6
              cellular modified histidine biosynthetic process + 0
              coenzyme B biosynthetic process 0
              creatine biosynthetic process 2
              folic acid-containing compound biosynthetic process + 9
              glutathione biosynthetic process + 12
              hydroxylysine biosynthetic process 2
              lincomycin biosynthetic process 0
              ochratoxin A biosynthetic process 0
              pantothenate biosynthetic process 0
              peptidyl-1-thioglycine biosynthetic process from peptidyl-glycine + 0
              peptidyl-glycine cholesteryl ester biosynthesis from peptidyl-glycine 0
              phosphagen biosynthetic process + 4
              phosphatidylserine biosynthetic process + 4
              prenylcysteine biosynthetic process 0
              pyrrolysine biosynthetic process 0
              sarcosine biosynthetic process 0
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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.