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ONTOLOGY REPORT - ANNOTATIONS


Term:cellular modified amino acid biosynthetic process
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Accession:GO:0042398 term browser browse the term
Definition:The chemical reactions and pathways resulting in the formation of compounds derived from amino acids, organic acids containing one or more amino substituents.
Synonyms:exact_synonym: amino acid derivative biosynthetic process;   cellular amino acid derivative anabolism;   cellular amino acid derivative biosynthesis;   cellular amino acid derivative biosynthetic process;   cellular amino acid derivative formation;   cellular amino acid derivative synthesis;   cellular modified amino acid anabolism;   cellular modified amino acid biosynthesis;   cellular modified amino acid formation;   cellular modified amino acid synthesis


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10-formyltetrahydrofolate biosynthetic process term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Mthfd1 methylenetetrahydrofolate dehydrogenase (NADP+ dependent), methenyltetrahydrofolate cyclohydrolase, formyltetrahydrofolate synthase ISO
IMP
(MGI:5503248|PMID:23704330) MGI
BHF-UCL
PMID:23704330 GO_REF:0000096, MGI:4834177, MGI:5503248 NCBI chr12:76,254,406...76,319,820
Ensembl chr12:76,255,298...76,319,803
JBrowse link
G Mthfd1l methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1-like ISO (MGI:2679797|PMID:12937168) MGI PMID:12937168 GO_REF:0000096, MGI:2679797, MGI:4834177 NCBI chr10:3,972,892...4,167,081
Ensembl chr10:3,973,118...4,167,081
JBrowse link
carnitine biosynthetic process term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Acadm acyl-Coenzyme A dehydrogenase, medium chain ISO MGI GO_REF:0000096, MGI:4834177 NCBI chr 3:153,922,353...153,944,643
Ensembl chr 3:153,922,357...153,944,632
JBrowse link
G Bbox1 butyrobetaine (gamma), 2-oxoglutarate dioxygenase 1 (gamma-butyrobetaine hydroxylase) IBA
ISO
(MGI:6201960|PMID:21873635) GO_Central
MGI
PMID:21873635 GO_REF:0000096, MGI:4834177, MGI:6201960 NCBI chr 2:110,264,056...110,314,813
Ensembl chr 2:110,262,697...110,314,560
JBrowse link
G Tmlhe trimethyllysine hydroxylase, epsilon IBA
ISO
IDA
(MGI:6201960|PMID:21873635)
(MGI:2183690|PMID:12121276)
GO_Central
MGI
PMID:12121276, PMID:21873635 GO_REF:0000096, MGI:2183690, MGI:4834177, MGI:6201960
creatine biosynthetic process term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gamt guanidinoacetate methyltransferase ISO
IMP
IBA
(MGI:3043413|PMID:15028668)
(MGI:6201960|PMID:21873635)
MGI
GO_Central
PMID:15028668, PMID:21873635 GO_REF:0000096, MGI:3043413, MGI:4417868, MGI:4834177, MGI:6201960 NCBI chr10:80,258,151...80,261,025
Ensembl chr10:80,258,151...80,261,012
JBrowse link
G Gatm glycine amidinotransferase (L-arginine:glycine amidinotransferase) ISO
IBA
(MGI:6201960|PMID:21873635) MGI
GO_Central
PMID:21873635 GO_REF:0000008, MGI:2154458, MGI:6201960 NCBI chr 2:122,594,473...122,611,277
Ensembl chr 2:122,594,467...122,611,303
JBrowse link
folic acid-containing compound biosynthetic process term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Fpgs folylpolyglutamyl synthetase IBA (MGI:6201960|PMID:21873635) GO_Central PMID:21873635 MGI:6201960 NCBI chr 2:32,682,609...32,704,196
Ensembl chr 2:32,682,609...32,704,145
JBrowse link
G Mthfs 5, 10-methenyltetrahydrofolate synthetase IBA (MGI:6201960|PMID:21873635) GO_Central PMID:21873635 MGI:6201960 NCBI chr 9:89,211,190...89,240,225
Ensembl chr 9:89,210,676...89,377,713
JBrowse link
G Mthfsl 5, 10-methenyltetrahydrofolate synthetase-like IBA (MGI:6201960|PMID:21873635) GO_Central PMID:21873635 MGI:6201960 NCBI chr 9:88,685,630...88,720,320
Ensembl chr 9:88,688,602...88,720,296
JBrowse link
glutathione biosynthetic process term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gclc glutamate-cysteine ligase, catalytic subunit ISO
IBA
IDA
IMP
(MGI:6201960|PMID:21873635)
(MGI:3607629|PMID:16081425)
(MGI:1858542|PMID:10805773)
MGI
GO_Central
PMID:10805773, PMID:16081425, PMID:21873635 GO_REF:0000096, MGI:1858542, MGI:3607629, MGI:4417868, MGI:4834177, MGI:6201960 NCBI chr 9:77,754,535...77,794,489
Ensembl chr 9:77,754,535...77,794,485
JBrowse link
G Gclm glutamate-cysteine ligase, modifier subunit IDA
IBA
ISO
(MGI:3607629|PMID:16081425)
(MGI:6201960|PMID:21873635)
MGI
GO_Central
PMID:16081425, PMID:21873635 GO_REF:0000096, MGI:3607629, MGI:4417868, MGI:4834177, MGI:6201960 NCBI chr 3:122,245,487...122,267,215
Ensembl chr 3:122,245,557...122,270,732
JBrowse link
G Ggt1 gamma-glutamyltransferase 1 IMP (MGI:5294309|PMID:12468440) UniProt PMID:12468440 MGI:5294309 NCBI chr10:75,561,076...75,586,193
Ensembl chr10:75,561,604...75,586,200
JBrowse link
G Ggt5 gamma-glutamyltransferase 5 IEA UniProt GO_REF:0000004, MGI:1354194 NCBI chr10:75,589,327...75,617,200
Ensembl chr10:75,589,340...75,617,200
JBrowse link
G Ggt6 gamma-glutamyltransferase 6 IEA UniProt GO_REF:0000004, MGI:1354194 NCBI chr11:72,435,247...72,438,566
Ensembl chr11:72,435,526...72,438,400
JBrowse link
G Ggt7 gamma-glutamyltransferase 7 IEA UniProt GO_REF:0000004, MGI:1354194 NCBI chr 2:155,490,379...155,514,891
Ensembl chr 2:155,490,379...155,518,237
JBrowse link
G Gss glutathione synthetase ISO MGI GO_REF:0000096, MGI:4417868 NCBI chr 2:155,563,181...155,592,810
Ensembl chr 2:155,563,181...155,592,810
JBrowse link
G Hagh hydroxyacyl glutathione hydrolase ISO
IC
(MGI:48978|PMID:1914521) MGI PMID:1914521 GO_REF:0000096, MGI:4834177, MGI:48978 NCBI chr17:24,839,781...24,864,450
Ensembl chr17:24,840,143...24,864,450
JBrowse link
G Mgst2 microsomal glutathione S-transferase 2 ISO MGI GO_REF:0000096, MGI:4834177 NCBI chr 3:51,636,912...51,682,675
Ensembl chr 3:51,660,360...51,682,677
JBrowse link
glycine betaine biosynthetic process from choline term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Chdh choline dehydrogenase IEA UniProt GO_REF:0000002, MGI:2152098 NCBI chr14:30,008,901...30,040,468
Ensembl chr14:30,009,023...30,040,527
JBrowse link
hydroxylysine biosynthetic process term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Plod2 procollagen lysine, 2-oxoglutarate 5-dioxygenase 2 ISO MGI GO_REF:0000096, MGI:4834177 NCBI chr 9:92,539,636...92,608,428
Ensembl chr 9:92,542,223...92,608,428
JBrowse link
G Plod3 procollagen-lysine, 2-oxoglutarate 5-dioxygenase 3 IDA (MGI:6202004|PMID:16447251) UniProt PMID:16447251 MGI:6202004 NCBI chr 5:136,987,019...136,996,646
Ensembl chr 5:136,987,019...136,996,648
JBrowse link
phosphatidylserine biosynthetic process term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Plscr1 phospholipid scramblase 1 IDA (MGI:5284813|PMID:12509439) UniProt PMID:12509439 MGI:5284813 NCBI chr 9:92,250,194...92,272,561
Ensembl chr 9:92,249,750...92,272,278
JBrowse link
G Ptdss1 phosphatidylserine synthase 1 ISO MGI GO_REF:0000096, MGI:4834177 NCBI chr13:66,932,830...66,998,401
Ensembl chr13:66,932,830...66,998,401
JBrowse link
G Ptdss2 phosphatidylserine synthase 2 IMP
ISO
(MGI:2446765|PMID:12361952) MGI PMID:12361952 GO_REF:0000096, MGI:2446765, MGI:4834177 NCBI chr 7:141,131,267...141,156,158
Ensembl chr 7:141,122,382...141,157,606
JBrowse link
G Slc27a1 solute carrier family 27 (fatty acid transporter), member 1 ISO
IBA
(MGI:6201960|PMID:21873635) MGI
GO_Central
PMID:21873635 GO_REF:0000096, MGI:4834177, MGI:6201960 NCBI chr 8:71,568,728...71,587,307
Ensembl chr 8:71,568,882...71,587,302
JBrowse link
phosphocreatine biosynthetic process term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ckb creatine kinase, brain IBA (MGI:6201960|PMID:21873635) GO_Central PMID:21873635 MGI:6201960 NCBI chr12:111,669,355...111,672,338
Ensembl chr12:111,669,361...111,672,338
JBrowse link
G Ckm creatine kinase, muscle IDA
IBA
ISO
(MGI:3513707|PMID:15601660)
(MGI:6201960|PMID:21873635)
MGI
GO_Central
PMID:15601660, PMID:21873635 GO_REF:0000096, MGI:3513707, MGI:4417868, MGI:6201960 NCBI chr 7:19,411,094...19,421,583
Ensembl chr 7:19,404,776...19,422,841
JBrowse link
G Ckmt1 creatine kinase, mitochondrial 1, ubiquitous IBA (MGI:6201960|PMID:21873635) GO_Central PMID:21873635 MGI:6201960 NCBI chr 2:121,357,773...121,363,737
Ensembl chr 2:121,357,714...121,363,737
JBrowse link
G Ckmt2 creatine kinase, mitochondrial 2 IBA (MGI:6201960|PMID:21873635) GO_Central PMID:21873635 MGI:6201960 NCBI chr13:91,853,386...91,876,923
Ensembl chr13:91,853,387...91,876,885
JBrowse link
positive regulation of glutathione biosynthetic process term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Eif2ak3 eukaryotic translation initiation factor 2 alpha kinase 3 IMP (MGI:5616326|PMID:14978030) ParkinsonsUK-UCL PMID:14978030 MGI:5616326 NCBI chr 6:70,844,484...70,905,241
Ensembl chr 6:70,844,515...70,905,245
JBrowse link
G Nfe2l2 nuclear factor, erythroid derived 2, like 2 IMP (MGI:5616326|PMID:14978030) ParkinsonsUK-UCL PMID:14978030 MGI:5616326 NCBI chr 2:75,675,513...75,704,663
Ensembl chr 2:75,675,513...75,704,641
JBrowse link
positive regulation of L-dopa biosynthetic process term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Park7 Parkinson disease (autosomal recessive, early onset) 7 ISO MGI GO_REF:0000096, MGI:4834177 NCBI chr 4:150,897,133...150,909,921
Ensembl chr 4:150,897,133...150,914,437
JBrowse link
regulation of glutathione biosynthetic process term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Slc7a11 solute carrier family 7 (cationic amino acid transporter, y+ system), member 11 IMP (MGI:3588610|PMID:16037214) MGI PMID:16037214 MGI:3588610 NCBI chr 3:50,364,936...50,499,087
Ensembl chr 3:49,892,526...50,443,614
JBrowse link
tetrahydrofolate biosynthetic process term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Atic 5-aminoimidazole-4-carboxamide ribonucleotide formyltransferase/IMP cyclohydrolase ISO MGI GO_REF:0000096, MGI:4417868 NCBI chr 1:71,557,156...71,579,403
Ensembl chr 1:71,557,150...71,579,631
JBrowse link
G Dhfr dihydrofolate reductase ISO
IBA
(MGI:6201960|PMID:21873635) MGI
GO_Central
PMID:21873635 GO_REF:0000096, MGI:4417868, MGI:4834177, MGI:6201960 NCBI chr13:92,354,783...92,389,053
Ensembl chr13:92,354,726...92,389,053
JBrowse link
G Gart phosphoribosylglycinamide formyltransferase ISO MGI GO_REF:0000096, MGI:4417868 NCBI chr16:91,621,395...91,646,972
Ensembl chr16:91,621,186...91,646,952
JBrowse link
G Gch1 GTP cyclohydrolase 1 IEA UniProt GO_REF:0000002, MGI:2152098 NCBI chr14:47,153,895...47,189,413
Ensembl chr14:47,153,895...47,189,413
JBrowse link
tetrahydrofolylpolyglutamate biosynthetic process term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Fpgs folylpolyglutamyl synthetase IBA
ISO
(MGI:6201960|PMID:21873635) GO_Central
MGI
PMID:21873635 GO_REF:0000096, MGI:4834177, MGI:6201960 NCBI chr 2:32,682,609...32,704,196
Ensembl chr 2:32,682,609...32,704,145
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 23386
    metabolic process 11305
      nitrogen compound metabolic process 9366
        organonitrogen compound metabolic process 6255
          organonitrogen compound biosynthetic process 1514
            cellular modified amino acid biosynthetic process 38
              (3-aminopropyl)(L-aspartyl-1-amino)phosphoryl-5'-adenosine biosynthetic process from asparagine 0
              4-hydroxyproline biosynthetic process 0
              L-dopa biosynthetic process + 1
              O3-(N-acetylglucosamine-1-phosphoryl)-L-serine biosynthetic process 0
              S-methylmethionine biosynthetic process 0
              aerobactin biosynthetic process 0
              amino-acid betaine biosynthetic process + 4
              cellular modified histidine biosynthetic process + 0
              coenzyme B biosynthetic process 0
              creatine biosynthetic process 2
              folic acid-containing compound biosynthetic process + 9
              glutathione biosynthetic process + 12
              hydroxylysine biosynthetic process 2
              lincomycin biosynthetic process 0
              ochratoxin A biosynthetic process 0
              pantothenate biosynthetic process 0
              peptidyl-1-thioglycine biosynthetic process from peptidyl-glycine + 0
              peptidyl-glycine cholesteryl ester biosynthesis from peptidyl-glycine 0
              phosphagen biosynthetic process + 4
              phosphatidylserine biosynthetic process + 4
              prenylcysteine biosynthetic process 0
              pyrrolysine biosynthetic process 0
              sarcosine biosynthetic process 0
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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.