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ONTOLOGY REPORT - ANNOTATIONS


Term:cellular modified amino acid biosynthetic process
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Accession:GO:0042398 term browser browse the term
Definition:The chemical reactions and pathways resulting in the formation of compounds derived from amino acids, organic acids containing one or more amino substituents.
Synonyms:exact_synonym: amino acid derivative biosynthetic process;   cellular amino acid derivative anabolism;   cellular amino acid derivative biosynthesis;   cellular amino acid derivative biosynthetic process;   cellular amino acid derivative formation;   cellular amino acid derivative synthesis;   cellular modified amino acid anabolism;   cellular modified amino acid biosynthesis;   cellular modified amino acid formation;   cellular modified amino acid synthesis


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10-formyltetrahydrofolate biosynthetic process term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Mthfd1 methylenetetrahydrofolate dehydrogenase, cyclohydrolase and formyltetrahydrofolate synthetase 1 ISO (PMID:1881876)
(MGI:5503248|PMID:23704330)
BHF-UCL PMID:1881876 PMID:23704330 MGI:5503248 NCBI chrNW_004955466:5,422,141...5,485,773
Ensembl chrNW_004955466:5,420,702...5,485,773
JBrowse link
G Mthfd1l methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1 like ISO (PMID:12937168) BHF-UCL PMID:12937168 NCBI chrNW_004955439:10,432,732...10,621,991
Ensembl chrNW_004955439:10,438,883...10,621,768
JBrowse link
carnitine biosynthetic process term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Acadm acyl-CoA dehydrogenase medium chain ISO (PMID:16972171) BHF-UCL PMID:16972171 NCBI chrNW_004955423:17,173,648...17,199,189
Ensembl chrNW_004955423:17,172,779...17,199,090
JBrowse link
G Bbox1 gamma-butyrobetaine hydroxylase 1 ISO (PMID:20599753), (PMID:9753662) UniProtKB PMID:9753662 PMID:20599753 NCBI chrNW_004955476:6,368,842...6,433,797
Ensembl chrNW_004955476:6,368,842...6,433,797
JBrowse link
G Tmlhe trimethyllysine hydroxylase, epsilon ISO (PMID:15754339)
(MGI:2183690|PMID:12121276)
(PMID:23092983)
BHF-UCL
MGI
UniProtKB
PMID:12121276 PMID:15754339 PMID:23092983 MGI:2183690 NCBI chrNW_004955594:272,668...329,997
Ensembl chrNW_004955594:272,646...331,757
JBrowse link
creatine biosynthetic process term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gamt guanidinoacetate N-methyltransferase ISO (MGI:3043413|PMID:15028668)
(PMID:8651275)
RGD
MGI
UniProtKB
PMID:8651275 PMID:15028668 PMID:15533043 MGI:3043413 RGD:1359081 NCBI chrNW_004955495:6,536,541...6,539,424
Ensembl chrNW_004955495:6,536,544...6,539,424
JBrowse link
G Gatm glycine amidinotransferase ISO (PMID:9218780) MGI PMID:9218780 NCBI chrNW_004955409:8,068,524...8,084,603
Ensembl chrNW_004955409:8,068,476...8,084,603
JBrowse link
glutathione biosynthetic process term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gclc glutamate-cysteine ligase catalytic subunit ISO (PMID:12663448)
(MGI:3607629|PMID:16081425)
(MGI:1858542|PMID:10805773)
(PMID:10395918), (PMID:8104187), (PMID:9675072)
UniProtKB
MGI
RGD
UniProt
PMID:8104187 PMID:9675072 PMID:10395918 PMID:10805773 PMID:12663448 PMID:16081425 PMID:16183645 MGI:1858542 MGI:3607629 RGD:1582661 NCBI chrNW_004955411:2,593,523...2,617,553
Ensembl chrNW_004955411:2,593,541...2,616,539
JBrowse link
G Gclm glutamate-cysteine ligase modifier subunit ISO (MGI:3607629|PMID:16081425)
(PMID:12081989)
(PMID:10395918), (PMID:9675072)
RGD
MGI
UniProtKB
UniProt
PMID:9675072 PMID:10395918 PMID:12081989 PMID:16081425 PMID:16183645 MGI:3607629 RGD:1582661 NCBI chrNW_004955423:782,468...805,384
Ensembl chrNW_004955423:782,468...805,384
JBrowse link
G Ggt1 gamma-glutamyltransferase 1 ISO (MGI:5294309|PMID:12468440) UniProt PMID:12468440 MGI:5294309 NCBI chrNW_004955455:8,082,578...8,099,523 JBrowse link
G Gss glutathione synthetase ISO RGD PMID:10964706 RGD:1599340 NCBI chrNW_004955422:26,427,581...26,483,380
Ensembl chrNW_004955422:26,427,581...26,463,781
JBrowse link
G Hagh hydroxyacylglutathione hydrolase ISO (PMID:8550579) UniProtKB PMID:8550579 NCBI chrNW_004955442:15,451,910...15,465,211
Ensembl chrNW_004955442:15,451,910...15,465,211
JBrowse link
G Mgst2 microsomal glutathione S-transferase 2 ISO (PMID:8703034) UniProtKB PMID:8703034 NCBI chrNW_004955428:4,006,054...4,049,497
Ensembl chrNW_004955428:4,014,810...4,037,901
JBrowse link
hydroxylysine biosynthetic process term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Plod2 procollagen-lysine,2-oxoglutarate 5-dioxygenase 2 ISO (PMID:10934207) CAFA PMID:10934207 NCBI chrNW_004955474:11,392,163...11,473,918
Ensembl chrNW_004955474:11,392,163...11,475,508
JBrowse link
G Plod3 procollagen-lysine,2-oxoglutarate 5-dioxygenase 3 ISO (MGI:6202004|PMID:16447251) UniProt PMID:16447251 MGI:6202004 NCBI chrNW_004955456:16,082,424...16,090,773
Ensembl chrNW_004955456:16,082,437...16,093,389
JBrowse link
phosphatidylserine biosynthetic process term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Plscr1 phospholipid scramblase 1 ISO (MGI:5284813|PMID:12509439) UniProt PMID:12509439 MGI:5284813 NCBI chrNW_004955474:10,953,381...10,989,100 JBrowse link
G Ptdss1 phosphatidylserine synthase 1 ISO (PMID:19014349) FlyBase PMID:19014349 NCBI chrNW_004955417:12,268,908...12,327,127
Ensembl chrNW_004955417:12,268,107...12,327,127
JBrowse link
G Ptdss2 phosphatidylserine synthase 2 ISO (PMID:19014349)
(MGI:2446765|PMID:12361952)
FlyBase
MGI
PMID:12361952 PMID:19014349 MGI:2446765 NCBI chrNW_004955476:11,554,962...11,585,574
Ensembl chrNW_004955476:11,554,962...11,581,906
JBrowse link
G Slc27a1 solute carrier family 27 member 1 ISO (PMID:19523918) UniProtKB PMID:19523918 NCBI chrNW_004955524:803,793...821,920
Ensembl chrNW_004955524:805,014...821,838
JBrowse link
phosphocreatine biosynthetic process term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ckm creatine kinase, M-type ISO (MGI:3513707|PMID:15601660) RGD
MGI
PMID:12069495 PMID:15601660 MGI:3513707 RGD:1359082 NCBI chrNW_004955555:2,318,072...2,330,733
Ensembl chrNW_004955555:2,318,072...2,336,811
JBrowse link
positive regulation of glutathione biosynthetic process term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Eif2ak3 eukaryotic translation initiation factor 2 alpha kinase 3 ISO (MGI:5616326|PMID:14978030) ParkinsonsUK-UCL PMID:14978030 MGI:5616326 NCBI chrNW_004955424:210,867...279,267
Ensembl chrNW_004955424:226,038...280,593
JBrowse link
G Nfe2l2 nuclear factor, erythroid 2 like 2 ISO (MGI:5616326|PMID:14978030) ParkinsonsUK-UCL PMID:14978030 MGI:5616326 NCBI chrNW_004955403:19,510,122...19,536,428
Ensembl chrNW_004955403:19,532,103...19,535,944
JBrowse link
positive regulation of L-dopa biosynthetic process term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Park7 Parkinsonism associated deglycase ISO (PMID:16731528) ParkinsonsUK-UCL PMID:16731528 NCBI chrNW_004955486:4,974,130...4,985,927
Ensembl chrNW_004955486:4,969,497...4,985,885
JBrowse link
regulation of glutathione biosynthetic process term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Slc7a11 solute carrier family 7 member 11 ISO (MGI:3588610|PMID:16037214) MGI PMID:16037214 MGI:3588610 NCBI chrNW_004955428:5,238,460...5,309,085
Ensembl chrNW_004955428:5,237,865...5,309,085
JBrowse link
tetrahydrofolate biosynthetic process term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Atic 5-aminoimidazole-4-carboxamide ribonucleotide formyltransferase/IMP cyclohydrolase ISO RGD PMID:7057182 RGD:2301991 NCBI chrNW_004955457:704,213...729,702
Ensembl chrNW_004955457:704,213...730,134
JBrowse link
G Dhfr dihydrofolate reductase ISO (PMID:2303423) RGD
BHF-UCL
PMID:2303423 PMID:11502523 RGD:1298877 NCBI chrNW_004955418:29,274,170...29,283,028 JBrowse link
G Gart phosphoribosylglycinamide formyltransferase, phosphoribosylglycinamide synthetase, phosphoribosylaminoimidazole synthetase ISO RGD PMID:4078017 RGD:2301990 NCBI chrNW_004955407:32,944,638...32,975,142
Ensembl chrNW_004955407:32,944,164...32,973,863
JBrowse link
tetrahydrofolylpolyglutamate biosynthetic process term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Fpgs folylpolyglutamate synthase ISO (PMID:25164808), (PMID:3619447) BHF-UCL PMID:3619447 PMID:25164808 NCBI chrNW_004955419:853,891...871,729
Ensembl chrNW_004955419:851,152...871,522
JBrowse link

Term paths to the root
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  biological_process 11893
    metabolic process 7530
      nitrogen compound metabolic process 6286
        organonitrogen compound metabolic process 4287
          organonitrogen compound biosynthetic process 1014
            cellular modified amino acid biosynthetic process 28
              (3-aminopropyl)(L-aspartyl-1-amino)phosphoryl-5'-adenosine biosynthetic process from asparagine 0
              4-hydroxyproline biosynthetic process 0
              L-dopa biosynthetic process + 1
              O3-(N-acetylglucosamine-1-phosphoryl)-L-serine biosynthetic process 0
              S-methylmethionine biosynthetic process 0
              aerobactin biosynthetic process 0
              amino-acid betaine biosynthetic process + 3
              cellular modified histidine biosynthetic process + 0
              coenzyme B biosynthetic process 0
              creatine biosynthetic process 2
              folic acid-containing compound biosynthetic process + 6
              glutathione biosynthetic process + 9
              hydroxylysine biosynthetic process 2
              lincomycin biosynthetic process 0
              ochratoxin A biosynthetic process 0
              pantothenate biosynthetic process 0
              peptidyl-1-thioglycine biosynthetic process from peptidyl-glycine + 0
              peptidyl-glycine cholesteryl ester biosynthesis from peptidyl-glycine 0
              phosphagen biosynthetic process + 1
              phosphatidylserine biosynthetic process + 4
              prenylcysteine biosynthetic process 0
              pyrrolysine biosynthetic process 0
              sarcosine biosynthetic process 0
paths to the root