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ONTOLOGY REPORT - ANNOTATIONS


Term:water-soluble vitamin biosynthetic process
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Accession:GO:0042364 term browser browse the term
Definition:The chemical reactions and pathways resulting in the formation of any of a diverse group of vitamins that are soluble in water.
Synonyms:exact_synonym: water-soluble vitamin anabolism;   water-soluble vitamin biosynthesis;   water-soluble vitamin formation;   water-soluble vitamin synthesis



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L-ascorbic acid biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AKR1A1 aldo-keto reductase family 1 member A1 involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:15769935) Ensembl
MGI
PMID:15769935 GO_REF:0000107 NCBI chr 1:45,550,826...45,570,049
Ensembl chr 1:45,550,543...45,570,049
JBrowse link
G AKR1B1 aldo-keto reductase family 1 member B involved_in IEA Ensembl GO_REF:0000107 NCBI chr 7:134,442,350...134,459,239
Ensembl chr 7:134,442,356...134,459,284
JBrowse link
G GSTO1 glutathione S-transferase omega 1 ISO RGD PMID:9786866 RGD:70644 NCBI chr10:104,254,173...104,267,455
Ensembl chr10:104,235,356...104,267,459
JBrowse link
G GULOP gulonolactone (L-) oxidase, pseudogene involved_in
acts_upstream_of_or_within
ISO (PMID:10606751)
(PMID:10639167)
(PMID:14962674)
MGI
UniProt
PMID:10606751 PMID:10639167 PMID:14962674 NCBI chr 8:27,577,611...27,589,073
Ensembl chr 8:27,560,274...27,589,073
JBrowse link
G RGN regucalcin involved_in IEA
IBA
Ensembl
GO_Central
GO_REF:0000033 GO_REF:0000107 NCBI chr  X:47,078,443...47,093,313
Ensembl chr  X:47,078,355...47,093,314
JBrowse link
pyridoxal 5'-phosphate salvage term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G PDXK pyridoxal kinase involved_in IEA InterPro GO_REF:0000002 NCBI chr21:43,737,000...43,738,097
Ensembl chr21:43,719,094...43,762,307
JBrowse link
G PDXK pyridoxal kinase involved_in IC
IBA
IDA
IMP
IEA
(PMID:17766369)
(PMID:10987144), (PMID:17766369), (PMID:9099727)
(PMID:31187503)
UniProt
GO_Central
InterPro
PMID:9099727 PMID:10987144 PMID:17766369 PMID:31187503 GO_REF:0000002 GO_REF:0000033 NCBI chr21:43,719,129...43,762,299
Ensembl chr21:43,719,094...43,762,307
JBrowse link
pyridoxal phosphate biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G PDXK pyridoxal kinase ISO RGD PMID:2988502 RGD:2303018 NCBI chr21:43,737,000...43,738,097
Ensembl chr21:43,719,094...43,762,307
JBrowse link
G PNPO pyridoxamine 5'-phosphate oxidase involved_in IEA
IDA
IBA
(PMID:12824491) GOC
CAFA
GO_Central
PMID:12824491 GO_REF:0000033 GO_REF:0000108 NCBI chr17:47,941,571...47,949,308
Ensembl chr17:47,941,506...47,949,308
JBrowse link
pyridoxine biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G PNPO pyridoxamine 5'-phosphate oxidase involved_in IEA InterPro
UniProt
GO_REF:0000002 GO_REF:0000043 NCBI chr17:47,941,571...47,949,308
Ensembl chr17:47,941,506...47,949,308
JBrowse link
G PSAT1 phosphoserine aminotransferase 1 involved_in NAS (PMID:10637769) UniProt PMID:10637769 NCBI chr 9:78,297,125...78,330,093
Ensembl chr 9:78,297,125...78,330,093
JBrowse link
riboflavin biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G RFK riboflavin kinase involved_in IEA
NAS
(PMID:12623014) InterPro
UniProt
PMID:12623014 GO_REF:0000002 NCBI chr 9:76,385,526...76,394,426
Ensembl chr 9:76,385,526...76,394,517
JBrowse link
thiamine diphosphate biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G SLC19A2 solute carrier family 19 member 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 1:169,463,909...169,485,970
Ensembl chr 1:169,463,909...169,485,944
JBrowse link
G SLC19A3 solute carrier family 19 member 3 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 2:227,683,763...227,718,028
Ensembl chr 2:227,683,763...227,718,028
JBrowse link
G SLC25A19 solute carrier family 25 member 19 involved_in IEA Ensembl GO_REF:0000107 NCBI chr17:75,272,992...75,289,433
Ensembl chr17:75,272,981...75,289,510
JBrowse link
G THTPA thiamine triphosphatase involved_in IEA Ensembl GO_REF:0000107 NCBI chr14:23,511,760...23,560,271
Ensembl chr14:23,555,988...23,560,271
JBrowse link
G TPK1 thiamin pyrophosphokinase 1 involved_in IEA
IDA
IBA
(PMID:11342111), (PMID:38547260) UniProt
GO_Central
Ensembl
InterPro
PMID:11342111 PMID:38547260 GO_REF:0000002 GO_REF:0000033 GO_REF:0000041 GO_REF:0000104 GO_REF:0000107 NCBI chr 7:144,451,941...144,836,437
Ensembl chr 7:144,451,941...144,836,395
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 19699
    cellular process 18949
      metabolic process 12899
        small molecule metabolic process 1996
          vitamin metabolic process 132
            water-soluble vitamin metabolic process 73
              water-soluble vitamin biosynthetic process 15
                L-ascorbic acid biosynthetic process + 5
                biotin biosynthetic process 0
                cobalamin biosynthetic process + 0
                folic acid biosynthetic process 0
                pantothenate biosynthetic process 0
                riboflavin biosynthetic process 1
                thiamine-containing compound biosynthetic process + 5
                vitamin B6 biosynthetic process + 4
paths to the root