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ONTOLOGY REPORT - ANNOTATIONS


Term:water-soluble vitamin biosynthetic process
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Accession:GO:0042364 term browser browse the term
Definition:The chemical reactions and pathways resulting in the formation of any of a diverse group of vitamins that are soluble in water.
Synonyms:exact_synonym: water-soluble vitamin anabolism;   water-soluble vitamin biosynthesis;   water-soluble vitamin formation;   water-soluble vitamin synthesis



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L-ascorbic acid biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AKR1A1 aldo-keto reductase family 1 member A1 involved_in
acts_upstream_of_or_within
ISO PMID:22820017
(PMID:20410296)
(PMID:15769935)
UniProt
MGI
PMID:15769935 PMID:20410296 PMID:22820017 RGD:13825440 NCBI chr15:14,792,398...14,808,805
Ensembl chr15:14,742,012...14,808,592
JBrowse link
G AKR1B1 aldo-keto reductase family 1 member B involved_in ISO (PMID:20410296) MGI PMID:20410296 NCBI chr14:2,991,888...3,006,941
Ensembl chr14:2,991,888...3,006,940
JBrowse link
G GSTO1 glutathione S-transferase omega 1 ISO RGD PMID:9786866 RGD:70644 NCBI chr28:16,569,421...16,579,239
Ensembl chr28:16,569,066...16,619,880
JBrowse link
G GULO gulonolactone (L-) oxidase involved_in IEA UniProt
Ensembl
GO_REF:0000043 GO_REF:0000107 NCBI chr25:30,007,888...30,039,996 JBrowse link
G RGN regucalcin involved_in IEA Ensembl GO_REF:0000107 NCBI chr  X:40,697,292...40,715,491
Ensembl chr  X:40,698,768...40,715,490
JBrowse link
pyridoxal 5'-phosphate salvage term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G PDXK pyridoxal kinase involved_in IEA InterPro GO_REF:0000002 NCBI chr31:37,686,002...37,710,059
Ensembl chr31:37,685,492...37,707,767
JBrowse link
pyridoxal phosphate biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G PNPO pyridoxamine 5'-phosphate oxidase involved_in IEA Ensembl
GOC
GO_REF:0000107 GO_REF:0000108 NCBI chr 9:24,252,895...24,258,523
Ensembl chr 9:24,252,964...24,258,106
JBrowse link
pyridoxine biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G PNPO pyridoxamine 5'-phosphate oxidase involved_in IEA InterPro GO_REF:0000002 NCBI chr 9:24,252,895...24,258,523
Ensembl chr 9:24,252,964...24,258,106
JBrowse link
riboflavin biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G RFK riboflavin kinase involved_in IEA InterPro GO_REF:0000002 NCBI chr 1:82,062,290...82,071,033
Ensembl chr 1:82,059,631...82,069,257
JBrowse link
thiamine diphosphate biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G LOC486151 thiamine transporter 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr25:40,411,489...40,442,183
Ensembl chr25:40,412,427...40,438,042
JBrowse link
G SLC19A2 solute carrier family 19 member 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 7:29,094,341...29,114,319
Ensembl chr 7:29,094,101...29,113,249
JBrowse link
G SLC25A19 solute carrier family 25 member 19 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 9:5,208,982...5,226,925
Ensembl chr 9:5,209,059...5,226,569
JBrowse link
G THTPA thiamine triphosphatase involved_in IEA Ensembl GO_REF:0000107 NCBI chr 8:3,781,931...3,785,093
Ensembl chr 8:3,782,163...3,785,394
JBrowse link
G TPK1 thiamin pyrophosphokinase 1 involved_in IEA InterPro
UniProt
Ensembl
GO_REF:0000002 GO_REF:0000041 GO_REF:0000104 GO_REF:0000107 NCBI chr16:5,257,749...5,588,179
Ensembl chr16:5,257,205...5,636,153
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 17076
    cellular process 16568
      metabolic process 10682
        small molecule metabolic process 1731
          vitamin metabolic process 95
            water-soluble vitamin metabolic process 50
              water-soluble vitamin biosynthetic process 13
                L-ascorbic acid biosynthetic process + 5
                biotin biosynthetic process 0
                cobalamin biosynthetic process + 0
                folic acid biosynthetic process 0
                pantothenate biosynthetic process 0
                riboflavin biosynthetic process 1
                thiamine-containing compound biosynthetic process + 5
                vitamin B6 biosynthetic process + 2
paths to the root