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ONTOLOGY REPORT - ANNOTATIONS


Term:water-soluble vitamin biosynthetic process
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Accession:GO:0042364 term browser browse the term
Definition:The chemical reactions and pathways resulting in the formation of any of a diverse group of vitamins that are soluble in water.
Synonyms:exact_synonym: water-soluble vitamin anabolism;   water-soluble vitamin biosynthesis;   water-soluble vitamin formation;   water-soluble vitamin synthesis



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L-ascorbic acid biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AKR1A1 aldo-keto reductase family 1 member A1 involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:15769935) Ensembl
MGI
PMID:15769935 GO_REF:0000107 NCBI chr 1:44,853,867...44,871,764
Ensembl chr 1:46,211,859...46,230,072
JBrowse link
G AKR1B1 aldo-keto reductase family 1 member B involved_in ISO (PMID:20410296) MGI PMID:20410296 NCBI chr 7:126,400,861...126,417,756
Ensembl chr 7:138,912,953...138,924,095
JBrowse link
G GSTO1 glutathione S-transferase omega 1 ISO RGD PMID:9786866 RGD:70644 NCBI chr10:100,853,682...100,866,892
Ensembl chr10:104,313,024...104,325,733
JBrowse link
G RGN regucalcin involved_in IEA Ensembl
TreeGrafter
GO_REF:0000107 GO_REF:0000118 NCBI chr  X:39,513,135...39,530,188
Ensembl chr  X:47,371,226...47,388,881
JBrowse link
pyridoxal 5'-phosphate salvage term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G PDXK pyridoxal kinase involved_in IEA InterPro
TreeGrafter
Ensembl
GO_REF:0000002 GO_REF:0000107 GO_REF:0000118 NCBI chr21:29,977,286...30,021,266
Ensembl chr21:43,273,237...43,313,637
JBrowse link
pyridoxal phosphate biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G PDXK pyridoxal kinase ISO RGD PMID:2988502 RGD:2303018 NCBI chr21:29,977,286...30,021,266
Ensembl chr21:43,273,237...43,313,637
JBrowse link
G PNPO pyridoxamine 5'-phosphate oxidase involved_in IEA Ensembl
TreeGrafter
GO_REF:0000107 GO_REF:0000118 NCBI chr17:9,589,253...9,596,973
Ensembl chr17:9,773,052...9,778,922
JBrowse link
pyridoxine biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G PNPO pyridoxamine 5'-phosphate oxidase involved_in IEA InterPro GO_REF:0000002 NCBI chr17:9,589,253...9,596,973
Ensembl chr17:9,773,052...9,778,922
JBrowse link
riboflavin biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G RFK riboflavin kinase involved_in IEA InterPro GO_REF:0000002 NCBI chr 9:48,447,295...48,456,262
Ensembl chr 9:75,245,636...75,254,350
JBrowse link
thiamine diphosphate biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G SLC19A2 solute carrier family 19 member 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 1:144,946,248...144,968,736
Ensembl chr 1:148,668,687...148,690,713
JBrowse link
G SLC19A3 solute carrier family 19 member 3 involved_in IEA Ensembl GO_REF:0000107 NCBI chr2B:114,925,990...114,957,841
Ensembl chr2B:233,736,050...233,764,514
JBrowse link
G SLC25A19 solute carrier family 25 member 19 involved_in IEA Ensembl GO_REF:0000107 NCBI chr17:69,220,073...69,237,067
Ensembl chr17:74,773,341...74,789,699
JBrowse link
G THTPA thiamine triphosphatase involved_in IEA Ensembl GO_REF:0000107 NCBI chr14:4,374,439...4,378,028
Ensembl chr14:22,467,506...22,471,356
JBrowse link
G TPK1 thiamin pyrophosphokinase 1 involved_in IEA UniProt
TreeGrafter
Ensembl
InterPro
GO_REF:0000002 GO_REF:0000041 GO_REF:0000104 GO_REF:0000107 GO_REF:0000118 NCBI chr 7:136,165,941...136,549,606
Ensembl chr 7:148,654,445...149,036,342
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 16624
    cellular process 16184
      metabolic process 10745
        small molecule metabolic process 1683
          vitamin metabolic process 98
            water-soluble vitamin metabolic process 48
              water-soluble vitamin biosynthetic process 12
                L-ascorbic acid biosynthetic process + 4
                biotin biosynthetic process 0
                cobalamin biosynthetic process + 0
                folic acid biosynthetic process 0
                pantothenate biosynthetic process 0
                riboflavin biosynthetic process 1
                thiamine-containing compound biosynthetic process + 5
                vitamin B6 biosynthetic process + 2
paths to the root