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ONTOLOGY REPORT - ANNOTATIONS

Term:water-soluble vitamin biosynthetic process
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Accession:GO:0042364 term browser browse the term
Definition:The chemical reactions and pathways resulting in the formation of any of a diverse group of vitamins that are soluble in water.
Synonyms:exact_synonym: water-soluble vitamin anabolism;   water-soluble vitamin biosynthesis;   water-soluble vitamin formation;   water-soluble vitamin synthesis

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L-ascorbic acid biosynthetic process term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Akr1a1 aldo-keto reductase family 1 member A1 IMP
ISO		 PMID:22820017
(MGI:3588122|PMID:15769935), (MGI:4834110|PMID:20410296)		 RGD PMID:15769935 PMID:20410296, PMID:22820017 MGI:3588122 MGI:4834110, RGD:13825440 NCBI chr 5:135,482,068...135,498,693
Ensembl chr 5:135,482,068...135,498,822 		JBrowse link
G Gsto1 glutathione S-transferase omega 1 IMP RGD PMID:9786866 RGD:70644 NCBI chr 1:267,607,437...267,617,387
Ensembl chr 1:267,607,418...267,617,387 		JBrowse link
G Gulo gulonolactone (L-) oxidase IEA
ISS		 GO_REF:0000107
GO_REF:0000024		 Ensembl
UniProt		 GO_REF:0000024 GO_REF:0000107 NCBI chr15:42,671,206...42,693,711
Ensembl chr15:42,671,203...42,693,694 		JBrowse link
G Rgn regucalcin ISS
IBA
ISO		 GO_REF:0000024
PMID:21873635
(MGI:5486063|PMID:23349732)		 UniProt
RGD		 PMID:23349732, PMID:21873635 GO_REF:0000024 MGI:5486063, RGD:13792537 NCBI chr  X:1,833,484...1,848,904
Ensembl chr  X:1,833,492...1,848,904 		JBrowse link
pyridoxal 5'-phosphate salvage term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Pdxk pyridoxal kinase IEA
IBA		 GO_REF:0000002
PMID:21873635		 InterPro PMID:21873635 GO_REF:0000002, RGD:13792537 NCBI chr20:10,930,651...10,952,194
Ensembl chr20:10,930,518...10,952,391 		JBrowse link
G RGD1566085 similar to pyridoxal (pyridoxine, vitamin B6) kinase IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr20:10,883,952...10,912,870
Ensembl chr20:10,889,573...10,912,769 		JBrowse link
pyridoxal phosphate biosynthetic process term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Pdxk pyridoxal kinase IDA RGD PMID:2988502 RGD:2303018 NCBI chr20:10,930,651...10,952,194
Ensembl chr20:10,930,518...10,952,391 		JBrowse link
G Pnpo pyridoxamine 5'-phosphate oxidase ISO
IBA		 (PMID:12824491)
PMID:21873635		 RGD PMID:12824491, PMID:21873635 RGD:13792537 NCBI chr10:84,874,926...84,881,190
Ensembl chr10:84,874,927...84,881,190 		JBrowse link
pyridoxine biosynthetic process term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Pnpo pyridoxamine 5'-phosphate oxidase IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr10:84,874,926...84,881,190
Ensembl chr10:84,874,927...84,881,190 		JBrowse link
riboflavin biosynthetic process term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Rfk riboflavin kinase IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 1:236,494,221...236,501,733
Ensembl chr 1:236,494,221...236,501,733 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 20045
    metabolic process 12102
      small molecule metabolic process 1811
        vitamin metabolic process 82
          water-soluble vitamin metabolic process 37
            water-soluble vitamin biosynthetic process 8
              L-ascorbic acid biosynthetic process + 4
              biotin biosynthetic process 0
              cobalamin biosynthetic process + 0
              folic acid biosynthetic process 0
              pantothenate biosynthetic process 0
              riboflavin biosynthetic process 1
              thiamine-containing compound biosynthetic process + 0
              vitamin B6 biosynthetic process + 3
paths to the root