ONTOLOGY REPORT - ANNOTATIONS
Term: vitamin D metabolic process
Accession: GO:0042359
browse the term
Definition: The chemical reactions and pathways involving vitamin D, any of a group of related, fat-soluble compounds that are derived from delta-5,7 steroids and play a central role in calcium metabolism. Specific forms of vitamin D include calciferol (ergocalciferol; vitamin D2) and cholecalciferol (calciol; vitamin D3).
Synonyms: exact_synonym: vitamin D metabolism
narrow_synonym: calciferol metabolic process; calciferol metabolism; cholecalciferol metabolic process; cholecalciferol metabolism; ergocalciferol metabolic process; ergocalciferol metabolism
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Calb1
calbindin 1
TAS
RGD
PMID:2792772
RGD:68751
NCBI chr 5:29,375,624...29,402,532
Ensembl chr 5:29,375,642...29,402,431
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Cyp24a1
cytochrome P450, family 24, subfamily a, polypeptide 1
acts_upstream_of_or_within
IDA ISO TAS
MGI:2182338 (PMID:15225763)
RGD
PMID:15225763 PMID:1991512 PMID:12372434
RGD:1298844 , RGD:734870
NCBI chr 3:159,275,947...159,290,383
Ensembl chr 3:159,275,947...159,290,383
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Cyp27b1
cytochrome P450, family 27, subfamily b, polypeptide 1
involved_in
TAS ISO IDA
(PMID:9415400)
RGD
PMID:9415400 PMID:11316734 PMID:9371776
RGD:68680 , RGD:69372
NCBI chr 7:62,869,340...62,876,242
Ensembl chr 7:62,871,297...62,876,241
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Cyp2r1
cytochrome P450, family 2, subfamily r, polypeptide 1
acts_upstream_of_or_within
ISO
(PMID:12867411)
RGD
PMID:12867411
NCBI chr 1:168,749,302...168,798,079
Ensembl chr 1:168,751,038...168,797,759
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Fgf23
fibroblast growth factor 23
IEP
RGD
PMID:15531762
RGD:1598934
NCBI chr 4:159,914,267...159,923,821
Ensembl chr 4:159,914,272...159,923,821
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Gc
GC, vitamin D binding protein
involved_in acts_upstream_of_or_within
IEA IBA ISO
GO_REF:0000107 GO_REF:0000033 (PMID:15225763)
Ensembl GO_Central RGD
PMID:15225763
GO_REF:0000033 GO_REF:0000107
NCBI chr14:18,632,146...18,667,563
Ensembl chr14:18,632,135...18,667,567
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Lrp2
LDL receptor related protein 2
involved_in acts_upstream_of_or_within
IEA ISO
GO_REF:0000107 (PMID:10052453)
Ensembl RGD
PMID:10052453
GO_REF:0000107
NCBI chr 3:54,189,305...54,346,769
Ensembl chr 3:54,189,308...54,346,708
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Cyp27a1
cytochrome P450, family 27, subfamily a, polypeptide 1
involved_in
ISO IEA IBA
(PMID:15465040) GO_REF:0000117 GO_REF:0000033
RGD UniProt GO_Central
PMID:15465040
GO_REF:0000033 GO_REF:0000117
NCBI chr 9:76,264,655...76,294,551
Ensembl chr 9:76,264,860...76,294,551
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Cyp27b1
cytochrome P450, family 27, subfamily b, polypeptide 1
involved_in
ISO IEA IBA
(PMID:15795327), (PMID:16549446), (PMID:17023519), (PMID:22862690), (PMID:9415400) (PMID:15972816) GO_REF:0000117 GO_REF:0000033
RGD UniProt GO_Central
PMID:9415400 PMID:15795327 PMID:15972816 PMID:16549446 PMID:17023519 PMID:22862690 More...
GO_REF:0000033 GO_REF:0000117
NCBI chr 7:62,869,340...62,876,242
Ensembl chr 7:62,871,297...62,876,241
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Cyp2r1
cytochrome P450, family 2, subfamily r, polypeptide 1
involved_in
ISO
(PMID:15465040), (PMID:18511070)
RGD
PMID:15465040 PMID:18511070
NCBI chr 1:168,749,302...168,798,079
Ensembl chr 1:168,751,038...168,797,759
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Cyp3a2
cytochrome P450, family 3, subfamily a, polypeptide 2
involved_in
IEA
GO_REF:0000108
GOC
GO_REF:0000108
NCBI chr12:9,207,978...9,230,064
Ensembl chr12:9,015,383...9,285,008
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Cyp27b1
cytochrome P450, family 27, subfamily b, polypeptide 1
involved_in
ISO
(PMID:16549446)
RGD
PMID:16549446
NCBI chr 7:62,869,340...62,876,242
Ensembl chr 7:62,871,297...62,876,241
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Gfi1
growth factor independent 1 transcriptional repressor
involved_in
ISO
(PMID:15947108)
RGD
PMID:15947108
NCBI chr14:2,040,576...2,056,874
Ensembl chr14:2,042,434...2,051,814
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Nfkb1
nuclear factor kappa B subunit 1
involved_in
ISO
(PMID:15243130)
RGD
PMID:15243130
NCBI chr 2:224,016,214...224,132,135
Ensembl chr 2:224,016,214...224,110,404
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Snai1
snail family transcriptional repressor 1
involved_in
ISO
(PMID:19502595)
RGD
PMID:19502595
NCBI chr 3:156,248,479...156,252,969
Ensembl chr 3:156,248,485...156,252,969
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Snai2
snail family transcriptional repressor 2
involved_in
ISO
(PMID:18485278), (PMID:19502595)
RGD
PMID:18485278 PMID:19502595
NCBI chr11:86,182,788...86,186,203
Ensembl chr11:86,181,909...86,186,200
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Ifng
interferon gamma
involved_in
ISO
(PMID:9282826)
RGD
PMID:9282826
NCBI chr 7:53,903,339...53,907,375
Ensembl chr 7:53,903,337...53,907,375
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Tnf
tumor necrosis factor
involved_in
ISO
(PMID:1690216)
RGD
PMID:1690216
NCBI chr20:3,622,011...3,624,629
Ensembl chr20:3,622,011...3,624,629
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Cyp24a1
cytochrome P450, family 24, subfamily a, polypeptide 1
involved_in
TAS IBA IDA ISO
GO_REF:0000033 PMID:16617161 (PMID:16617161), (PMID:24893882), (PMID:29461981), (PMID:8506296), (PMID:8679605) PMID:10231362
GO_Central RGD
PMID:8506296 PMID:8679605 PMID:16617161 PMID:24893882 PMID:29461981 PMID:12048211 PMID:16617161 PMID:10231362 More...
GO_REF:0000033, RGD:625496 , RGD:14995311 , RGD:14995316
NCBI chr 3:159,275,947...159,290,383
Ensembl chr 3:159,275,947...159,290,383
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Cyp27b1
cytochrome P450, family 27, subfamily b, polypeptide 1
involved_in
IEA ISO IBA IDA
GO_REF:0000107 (PMID:9295274) GO_REF:0000033 PMID:9333115
Ensembl RGD GO_Central
PMID:9295274 PMID:9333115
GO_REF:0000033 GO_REF:0000107, RGD:69373
NCBI chr 7:62,869,340...62,876,242
Ensembl chr 7:62,871,297...62,876,241
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Cyp3a2
cytochrome P450, family 3, subfamily a, polypeptide 2
involved_in
ISO
(PMID:29461981)
RGD
PMID:29461981
NCBI chr12:9,207,978...9,230,064
Ensembl chr12:9,015,383...9,285,008
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Fgf23
fibroblast growth factor 23
involved_in
ISO
(PMID:15040831)
RGD
PMID:15040831
NCBI chr 4:159,914,267...159,923,821
Ensembl chr 4:159,914,272...159,923,821
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Enpp1
ectonucleotide pyrophosphatase/phosphodiesterase 1
involved_in
ISO
MGI:1857079 (PMID:28798354)
RGD
PMID:28798354
NCBI chr 1:20,698,746...20,763,741
Ensembl chr 1:20,698,764...20,763,715
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Fgfr1
Fibroblast growth factor receptor 1
acts_upstream_of_or_within
ISO
MGI:95525 (PMID:24259513)
RGD
PMID:24259513
NCBI chr16:66,491,930...66,547,161
Ensembl chr16:66,494,042...66,547,350
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Fgfr4
fibroblast growth factor receptor 4
acts_upstream_of_or_within
ISO
MGI:95522 (PMID:24259513)
RGD
PMID:24259513
NCBI chr17:9,461,541...9,476,268
Ensembl chr17:9,461,547...9,476,242
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Ugt1a2
UDP glucuronosyltransferase 1 family, polypeptide A2
involved_in
ISO
(PMID:23756265)
RGD
PMID:23756265
NCBI chr 9:88,791,216...88,808,465
Ensembl chr 9:88,713,184...88,808,465
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Ugt1a3
UDP glycosyltransferase 1 family, polypeptide A3
involved_in
ISS
GO_REF:0000024
UniProt
GO_REF:0000024
NCBI chr 9:88,780,328...88,808,465
Ensembl chr 9:88,713,184...88,808,465
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Ugt1a5
UDP glucuronosyltransferase family 1 member A5
involved_in
ISO
(PMID:18177842), (PMID:24641623)
RGD
PMID:18177842 PMID:24641623
NCBI chr 9:88,762,250...88,808,465
Ensembl chr 9:88,713,184...88,808,465
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