Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models   new Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources

ONTOLOGY REPORT - ANNOTATIONS

Term:keratan sulfate metabolic process
go back to main search page
Accession:GO:0042339 term browser browse the term
Definition:The chemical reactions and pathways involving keratan sulfate, a glycosaminoglycan with repeat units consisting of beta-1,4-linked D-galactopyranosyl-beta-(1,4)-N-acetyl-D-glucosamine 6-sulfate and with variable amounts of fucose, sialic acid and mannose units; keratan sulfate chains are covalently linked by a glycosidic attachment through the trisaccharide galactosyl-galactosyl-xylose to peptidyl-threonine or serine residues.
Synonyms:exact_synonym: keratan sulfate metabolism;   keratan sulphate metabolic process;   keratan sulphate metabolism


show annotations for term's descendants           Sort by:
keratan sulfate metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Chst1 carbohydrate sulfotransferase 1 involved_in ISO
IBA		 (PMID:9405439)
GO_REF:0000033		 RGD
GO_Central		 PMID:9405439 GO_REF:0000033 NCBI chr 3:78,552,059...78,574,740
Ensembl chr 3:78,548,525...78,574,883 		JBrowse link
keratan sulfate biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G B3gnt7 UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 7 involved_in ISO
ISS		 (PMID:17690104)
(MGI:6151274|PMID:29625490)
GO_REF:0000024		 RGD
UniProt		 PMID:17690104 PMID:29625490 GO_REF:0000024 MGI:6151274 NCBI chr 9:86,956,220...86,960,171
Ensembl chr 9:86,956,220...86,960,170 		JBrowse link
G B4galt4 beta-1,4-galactosyltransferase 4 involved_in ISO
ISS		 (PMID:17690104), (PMID:32827291)
GO_REF:0000024		 RGD
UniProt		 PMID:17690104 PMID:32827291 GO_REF:0000024 NCBI chr11:61,995,807...62,021,751
Ensembl chr11:61,995,814...62,021,671 		JBrowse link
G Chst1 carbohydrate sulfotransferase 1 involved_in ISO
ISS		 (PMID:17690104)
GO_REF:0000024		 RGD
UniProt		 PMID:17690104 GO_REF:0000024 NCBI chr 3:78,552,059...78,574,740
Ensembl chr 3:78,548,525...78,574,883 		JBrowse link
G Chst4 carbohydrate sulfotransferase 4 involved_in IEA GO_REF:0000118 TreeGrafter GO_REF:0000118 NCBI chr19:37,993,471...38,002,123
Ensembl chr19:37,991,417...38,003,608 		JBrowse link
G Chst5 carbohydrate sulfotransferase 5 involved_in ISO
IBA		 (MGI:1934540|PMID:11278593)
GO_REF:0000033
(PMID:11278593), (PMID:17690104)		 RGD
GO_Central		 PMID:11278593 PMID:17690104 GO_REF:0000033 MGI:1934540 NCBI chr19:39,860,729...39,881,019
Ensembl chr19:39,860,501...39,881,064 		JBrowse link
keratan sulfate catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gns glucosamine (N-acetyl)-6-sulfatase IDA RGD PMID:3161730 RGD:1600571 NCBI chr 7:56,889,148...56,923,173
Ensembl chr 7:56,889,232...56,923,151 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 20413
    cellular process 18812
      cellular metabolic process 9901
        sulfur compound metabolic process 339
          keratan sulfate metabolic process 6
            keratan sulfate biosynthetic process 5
            keratan sulfate catabolic process 1
Path 2
Term Annotations click to browse term
  biological_process 20413
    metabolic process 11835
      organic substance metabolic process 11328
        macromolecule metabolic process 9578
          aminoglycan metabolic process 120
            glycosaminoglycan metabolic process 104
              mucopolysaccharide metabolic process 84
                keratan sulfate metabolic process 6
                  keratan sulfate biosynthetic process 5
                  keratan sulfate catabolic process 1
paths to the root