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ONTOLOGY REPORT - ANNOTATIONS


Term:ribosome biogenesis
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Accession:GO:0042254 term browser browse the term
Definition:A cellular process that results in the biosynthesis of constituent macromolecules, assembly, and arrangement of constituent parts of ribosome subunits; includes transport to the sites of protein synthesis.
Synonyms:exact_synonym: ribosome biogenesis and assembly
 alt_id: GO:0007046



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ribosome biogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Aatf apoptosis antagonizing transcription factor acts_upstream_of_or_within ISO MGI:2176283 (MGI:1927250|PMID:11071758) RGD PMID:11071758 MGI:1927250 NCBI chr10:69,299,029...69,392,207
Ensembl chr10:69,299,037...69,392,201
JBrowse link
G Abcf1 ATP binding cassette subfamily F member 1 NOT|involved_in ISO
ISS
(PMID:19570978)
GO_REF:0000024
RGD
UniProt
PMID:19570978 GO_REF:0000024 NCBI chr20:2,802,519...2,815,433
Ensembl chr20:2,802,488...2,815,433
JBrowse link
G Cul4a cullin 4A involved_in ISO (PMID:26711351)
(MGI:6294197|PMID:26711351)
RGD PMID:26711351 MGI:6294197 NCBI chr16:76,385,298...76,422,316
Ensembl chr16:76,384,546...76,422,330
JBrowse link
G Cul4b cullin 4B involved_in ISO (PMID:26711351)
(MGI:6294197|PMID:26711351)
RGD PMID:26711351 MGI:6294197 NCBI chr  X:117,287,481...117,326,688
Ensembl chr  X:117,287,484...117,326,688
JBrowse link
G Ddx31 DEAD-box helicase 31 involved_in IBA
ISO
PMID:21873635
(PMID:23019224)
RGD PMID:23019224 PMID:21873635 RGD:13792537 NCBI chr 3:12,172,829...12,238,392
Ensembl chr 3:12,172,836...12,238,873
JBrowse link
G Dhx37 DEAH-box helicase 37 involved_in ISO (PMID:30582406) RGD PMID:30582406 NCBI chr12:31,194,782...31,214,890
Ensembl chr12:31,194,859...31,216,802
JBrowse link
G Glul glutamate-ammonia ligase involved_in ISO (PMID:26711351) RGD PMID:26711351 NCBI chr13:65,969,064...66,035,121
Ensembl chr13:66,025,630...66,035,108
JBrowse link
G Grwd1 glutamate-rich WD repeat containing 1 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 1:96,301,260...96,306,962
Ensembl chr 1:96,301,261...96,307,201
JBrowse link
G Gtpbp10 GTP binding protein 10 involved_in IEA GO_REF:0000104 UniProt GO_REF:0000104 NCBI chr 4:28,476,857...28,494,375
Ensembl chr 4:28,476,857...28,494,375
JBrowse link
G Gtpbp4 GTP binding protein 4 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr17:61,308,033...61,328,184
Ensembl chr17:61,308,014...61,418,009
JBrowse link
G Isg20l2 interferon stimulated exonuclease gene 20-like 2 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 2:173,396,780...173,407,102
Ensembl chr 2:173,396,780...173,406,614
JBrowse link
G Mrpl36 mitochondrial ribosomal protein L36 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 1:29,965,481...29,968,896
Ensembl chr 1:29,965,317...29,968,807
JBrowse link
G Mtg2 mitochondrial ribosome-associated GTPase 2 involved_in IEA GO_REF:0000104 UniProt GO_REF:0000104 NCBI chr 3:167,165,542...167,181,358
Ensembl chr 3:167,165,982...167,181,358
JBrowse link
G Mybbp1a MYB binding protein 1a involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr10:57,056,913...57,067,263
Ensembl chr10:57,056,874...57,067,255
JBrowse link
G Naf1 nuclear assembly factor 1 ribonucleoprotein involved_in ISO
IBA
ISS
(PMID:16618814)
PMID:21873635
GO_REF:0000024
RGD
UniProt
PMID:16618814 PMID:21873635 GO_REF:0000024, RGD:13792537 NCBI chr16:22,837,586...22,868,293
Ensembl chr16:22,837,588...22,868,293
JBrowse link
G Noc4l nucleolar complex associated 4 homolog involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr12:46,016,077...46,020,615
Ensembl chr12:46,016,069...46,020,614
JBrowse link
G Nop56 NOP56 ribonucleoprotein involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 3:117,476,963...117,481,847
Ensembl chr 3:117,477,053...117,481,841
JBrowse link
G Nop58 NOP58 ribonucleoprotein involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 9:61,120,939...61,144,810
Ensembl chr 9:61,120,929...61,144,810
JBrowse link
G Nvl nuclear VCP-like involved_in IBA
ISO
PMID:21873635
(PMID:15469983), (PMID:16782053)
RGD PMID:15469983 PMID:16782053 PMID:21873635 RGD:13792537 NCBI chr13:92,851,023...92,906,749
Ensembl chr13:92,853,650...92,906,049
JBrowse link
G Pes1 pescadillo ribosomal biogenesis factor 1 acts_upstream_of_or_within ISO MGI:2445464 (MGI:2445239|PMID:12237316) RGD PMID:12237316 MGI:2445239 NCBI chr14:78,850,754...78,867,134
Ensembl chr14:78,850,709...78,867,134
JBrowse link
G Rbis ribosomal biogenesis factor involved_in IBA
ISO
PMID:21873635
(PMID:26711351)
RGD PMID:26711351 PMID:21873635 RGD:13792537 NCBI chr 2:86,981,314...86,997,352
Ensembl chr 2:86,991,315...87,041,339
JBrowse link
G Riox2 ribosomal oxygenase 2 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr11:40,861,365...40,884,782
Ensembl chr11:40,860,774...40,884,574
JBrowse link
G Rpl7a ribosomal protein L7A involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 3:10,239,026...10,241,703
Ensembl chr 3:10,239,001...10,241,716
JBrowse link
G Rps28 ribosomal protein S28 involved_in ISO
ISS
(PMID:24942156)
GO_REF:0000024
RGD
UniProt
PMID:24942156 GO_REF:0000024 NCBI chr 7:14,607,801...14,609,170
Ensembl chr 7:14,607,801...14,609,170
JBrowse link
G Rrn3 RRN3 homolog, RNA polymerase I transcription factor acts_upstream_of_or_within ISO MGI:3584037 (MGI:3583493|PMID:15989966) RGD PMID:15989966 MGI:3583493 NCBI chr10:2,129,949...2,165,381
Ensembl chr10:2,129,978...2,165,663
JBrowse link
G Rrp7a ribosomal RNA processing 7 homolog A involved_in ISO (PMID:33199730) RGD PMID:33199730 NCBI chr 7:114,262,929...114,272,817
Ensembl chr 7:114,256,472...114,272,817
JBrowse link
G Surf6 surfeit 6 acts_upstream_of_or_within ISO (MGI:3689171|PMID:16855206) RGD PMID:16855206 MGI:3689171 NCBI chr 3:10,221,450...10,232,306
Ensembl chr 3:10,221,452...10,232,251
JBrowse link
G Urb2 URB2 ribosome biogenesis homolog involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr19:52,011,019...52,036,607
Ensembl chr19:52,011,112...52,036,597
JBrowse link
G Xpo1 exportin 1 involved_in ISO (PMID:12724356) RGD PMID:12724356 NCBI chr14:97,233,263...97,275,536
Ensembl chr14:97,233,270...97,275,498
JBrowse link
G Znf658 zinc finger protein 658 involved_in ISO (PMID:25582195) RGD PMID:25582195
90S preribosome assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Rpl38 ribosomal protein L38 acts_upstream_of_or_within ISO (MGI:5014009|PMID:21529712) RGD PMID:21529712 MGI:5014009 NCBI chr10:99,701,330...99,705,004
Ensembl chr10:99,701,362...99,705,004
JBrowse link
cleavage in ITS2 between 5.8S rRNA and LSU-rRNA of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bop1 BOP1 ribosomal biogenesis factor involved_in ISO (MGI:3843427|PMID:17353269) RGD PMID:17353269 MGI:3843427 NCBI chr 7:108,172,062...108,195,875
Ensembl chr 7:108,172,066...108,195,931
JBrowse link
G Nol9 nucleolar protein 9 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 5:162,546,522...162,566,625
Ensembl chr 5:162,546,541...162,566,191
JBrowse link
G Npm1 nucleophosmin 1 IDA RGD PMID:9742256 RGD:11535027 NCBI chr10:17,741,512...17,751,626
Ensembl chr10:17,739,941...17,751,645
JBrowse link
cleavage involved in rRNA processing term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Nhp2 NHP2 ribonucleoprotein involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr10:35,877,015...35,880,409
Ensembl chr10:35,877,054...35,882,545
JBrowse link
G Nob1 NIN1 (RPN12) binding protein 1 homolog involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr19:35,322,803...35,335,354
Ensembl chr19:35,322,669...35,346,815
JBrowse link
G Rrp36 ribosomal RNA processing 36 involved_in IEA GO_REF:0000104 UniProt GO_REF:0000104 NCBI chr 9:14,308,810...14,316,959
Ensembl chr 9:14,308,982...14,316,110
JBrowse link
endonucleolytic cleavage in 5'-ETS of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Abt1 activator of basal transcription 1 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr17:41,699,151...41,701,253
Ensembl chr17:41,699,147...41,701,259
JBrowse link
G Fcf1 Fcf1 rRNA-processing protein acts_upstream_of_or_within ISO (MGI:5617283|PMID:25190460) RGD PMID:25190460 MGI:5617283 NCBI chr 6:104,617,780...104,629,643
Ensembl chr 6:104,617,770...104,629,643
JBrowse link
G Nop9 NOP9 nucleolar protein involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr15:29,243,853...29,252,220
Ensembl chr15:29,243,862...29,252,220
JBrowse link
G Rcl1 RNA terminal phosphate cyclase-like 1 acts_upstream_of_or_within ISO (MGI:5617283|PMID:25190460) RGD PMID:25190460 MGI:5617283 NCBI chr 1:226,824,524...226,869,046
Ensembl chr 1:226,824,534...226,902,315
JBrowse link
G Tbl3 transducin (beta)-like 3 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr10:13,726,127...13,731,340
Ensembl chr10:13,726,129...13,731,372
JBrowse link
G Utp23 UTP23, small subunit processome component acts_upstream_of_or_within ISO (MGI:5617283|PMID:25190460) RGD PMID:25190460 MGI:5617283 NCBI chr 7:83,185,187...83,196,652
Ensembl chr 7:83,189,656...83,196,655
JBrowse link
endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Abt1 activator of basal transcription 1 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr17:41,699,151...41,701,253
Ensembl chr17:41,699,147...41,701,259
JBrowse link
G AC135409.1 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 Ensembl chr 8:46,606,877...46,607,131 JBrowse link
G AC141489.1 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 Ensembl chr 5:153,387,176...153,387,427 JBrowse link
G Fcf1 Fcf1 rRNA-processing protein acts_upstream_of_or_within ISO (MGI:5617283|PMID:25190460) RGD PMID:25190460 MGI:5617283 NCBI chr 6:104,617,780...104,629,643
Ensembl chr 6:104,617,770...104,629,643
JBrowse link
G Nop9 NOP9 nucleolar protein involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr15:29,243,853...29,252,220
Ensembl chr15:29,243,862...29,252,220
JBrowse link
G Rcl1 RNA terminal phosphate cyclase-like 1 acts_upstream_of_or_within ISO (MGI:5617283|PMID:25190460) RGD PMID:25190460 MGI:5617283 NCBI chr 1:226,824,524...226,869,046
Ensembl chr 1:226,824,534...226,902,315
JBrowse link
G Rpp40 ribonuclease P/MRP subunit p40 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr17:28,947,730...28,956,790
Ensembl chr17:28,947,734...28,956,788
JBrowse link
G Rps21 ribosomal protein S21 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 3:167,346,437...167,347,459
Ensembl chr 3:167,346,201...167,347,470
JBrowse link
G Rps21-ps1 ribosomal protein S21, pseudogene 1 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 5:153,387,133...153,387,476
Ensembl chr 5:153,387,176...153,387,427
JBrowse link
G Rrs1 ribosome biogenesis regulator 1 homolog involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 5:9,733,486...9,735,119
Ensembl chr 5:9,733,091...9,735,140
JBrowse link
endonucleolytic cleavage of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bms1 BMS1 ribosome biogenesis factor involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 4:151,558,163...151,595,187
Ensembl chr 4:151,558,163...151,595,127
JBrowse link
G Rcl1 RNA terminal phosphate cyclase-like 1 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 1:226,824,524...226,869,046
Ensembl chr 1:226,824,534...226,902,315
JBrowse link
G Tsr1 TSR1, ribosome maturation factor involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr10:59,760,420...59,771,868
Ensembl chr10:59,760,409...59,771,864
JBrowse link
endonucleolytic cleavage to generate mature 3'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA) term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AC135409.1 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 Ensembl chr 8:46,606,877...46,607,131 JBrowse link
G AC141489.1 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 Ensembl chr 5:153,387,176...153,387,427 JBrowse link
G Rps21 ribosomal protein S21 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 3:167,346,437...167,347,459
Ensembl chr 3:167,346,201...167,347,470
JBrowse link
G Rps21-ps1 ribosomal protein S21, pseudogene 1 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 5:153,387,133...153,387,476
Ensembl chr 5:153,387,176...153,387,427
JBrowse link
endonucleolytic cleavage to generate mature 5'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA) term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Abt1 activator of basal transcription 1 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr17:41,699,151...41,701,253
Ensembl chr17:41,699,147...41,701,259
JBrowse link
G Nop9 NOP9 nucleolar protein involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr15:29,243,853...29,252,220
Ensembl chr15:29,243,862...29,252,220
JBrowse link
G Tbl3 transducin (beta)-like 3 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr10:13,726,127...13,731,340
Ensembl chr10:13,726,129...13,731,372
JBrowse link
enzyme-directed rRNA 2'-O-methylation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ftsj3 FtsJ RNA 2'-O-methyltransferase 3 involved_in IEA GO_REF:0000104 UniProt GO_REF:0000104 NCBI chr10:91,180,945...91,187,389
Ensembl chr10:91,180,696...91,187,397
JBrowse link
enzyme-directed rRNA pseudouridine synthesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dkc1 dyskerin pseudouridine synthase 1 involved_in ISS
ISO
GO_REF:0000024
(PMID:25219674)
UniProt
RGD
PMID:25219674 GO_REF:0000024
G Rpusd1 RNA pseudouridine synthase domain containing 1 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr10:14,751,310...14,755,213
Ensembl chr10:14,751,384...14,755,207
JBrowse link
G Rpusd2 RNA pseudouridine synthase domain containing 2 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 3:106,017,759...106,023,010
Ensembl chr 3:106,017,864...106,023,251
JBrowse link
G Rpusd3 RNA pseudouridine synthase D3 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 4:146,553,230...146,562,794
Ensembl chr 4:146,558,562...146,562,794
JBrowse link
G Rpusd4 RNA pseudouridine synthase D4 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 8:33,617,384...33,626,873
Ensembl chr 8:33,617,379...33,626,873
JBrowse link
G Tsr3 TSR3 ribosome maturation factor involved_in ISO (PMID:27084949) RGD PMID:27084949 NCBI chr10:14,257,150...14,259,712
Ensembl chr10:14,257,171...14,259,561
JBrowse link
exonucleolytic trimming to generate mature 3'-end of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Eri1 exoribonuclease 1 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr16:56,724,101...56,744,228
Ensembl chr16:56,724,115...56,744,226
JBrowse link
G Eri2 ERI1 exoribonuclease family member 2 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 1:174,140,831...174,168,757
Ensembl chr 1:174,141,993...174,168,665
JBrowse link
G Eri3 ERI1 exoribonuclease family member 3 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 5:131,016,146...131,143,347
Ensembl chr 5:131,016,126...131,143,329
JBrowse link
G Exosc10 exosome component 10 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 5:158,995,318...159,018,946
Ensembl chr 5:158,995,313...159,018,940
JBrowse link
G Exosc2 exosome component 2 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 3:14,962,930...14,973,645
Ensembl chr 3:14,962,917...14,973,575
JBrowse link
G Exosc3 exosome component 3 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 5:59,573,849...59,579,065
Ensembl chr 5:59,573,886...59,579,060
JBrowse link
G Exosc7 exosome component 7 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 8:122,773,607...122,798,943
Ensembl chr 8:122,773,591...122,799,270
JBrowse link
G Exosc8 exosome component 8 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 2:138,930,405...138,937,009
Ensembl chr 2:138,930,405...138,936,928
JBrowse link
G Exosc9 exosome component 9 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 2:119,416,028...119,426,981
Ensembl chr 2:119,388,715...119,427,051
JBrowse link
maturation of 5.8S rRNA term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G C1d C1D nuclear receptor corepressor involved_in IBA
ISO
PMID:21873635
(PMID:17412707)
RGD PMID:17412707 PMID:21873635 RGD:13792537 NCBI chr14:91,660,951...91,673,177
Ensembl chr14:91,660,989...91,672,852
JBrowse link
G Eif6 eukaryotic translation initiation factor 6 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 3:144,325,038...144,331,396
Ensembl chr 3:144,325,036...144,331,401
JBrowse link
G Exosc10 exosome component 10 involved_in ISO (PMID:17412707), (PMID:20368444) RGD PMID:17412707 PMID:20368444 NCBI chr 5:158,995,318...159,018,946
Ensembl chr 5:158,995,313...159,018,940
JBrowse link
G Exosc4 exosome component 4 involved_in ISO (PMID:20368444) RGD PMID:20368444 NCBI chr 7:108,047,831...108,050,573
Ensembl chr 7:108,047,831...108,050,573
JBrowse link
G Las1l LAS1-like, ribosome biogenesis factor involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr  X:60,851,969...60,873,717
Ensembl chr  X:60,851,962...60,873,687
JBrowse link
G Mak16 MAK16 homolog involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr16:60,972,699...60,981,250
Ensembl chr16:60,972,697...60,983,243
JBrowse link
G Mphosph6 M phase phosphoprotein 6 involved_in ISO (PMID:17412707) RGD PMID:17412707 NCBI chr19:45,860,152...45,870,077
Ensembl chr19:45,860,154...45,870,170
JBrowse link
G Mtrex Mtr4 exosome RNA helicase involved_in ISO
IBA
(PMID:17412707)
PMID:21873635
RGD PMID:17412707 PMID:21873635 RGD:13792537 NCBI chr 2:44,500,326...44,560,624
Ensembl chr 2:44,461,444...44,560,627
JBrowse link
G Nol9 nucleolar protein 9 involved_in ISO (PMID:21063389) RGD PMID:21063389 NCBI chr 5:162,546,522...162,566,625
Ensembl chr 5:162,546,541...162,566,191
JBrowse link
G Nsa2 NSA2 ribosome biogenesis factor involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 2:28,443,142...28,449,393
Ensembl chr 2:28,441,269...28,449,388
JBrowse link
G Prkdc protein kinase, DNA-activated, catalytic subunit involved_in ISO (PMID:32103174) RGD PMID:32103174 NCBI chr11:85,040,790...85,258,357
Ensembl chr11:85,040,792...85,257,952
JBrowse link
G Rpf1 ribosome production factor 1 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 2:235,403,020...235,417,546
Ensembl chr 2:235,403,021...235,417,807
JBrowse link
G Rrp15 ribosomal RNA processing 15 homolog involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr13:98,276,276...98,299,357
Ensembl chr13:98,276,134...98,299,370
JBrowse link
maturation of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ftsj3 FtsJ RNA 2'-O-methyltransferase 3 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr10:91,180,945...91,187,389
Ensembl chr10:91,180,696...91,187,397
JBrowse link
G Pes1 pescadillo ribosomal biogenesis factor 1 involved_in ISO
ISS
(PMID:16738141)
GO_REF:0000024
RGD
UniProt
PMID:16738141 GO_REF:0000024 NCBI chr14:78,850,754...78,867,134
Ensembl chr14:78,850,709...78,867,134
JBrowse link
G Urb1 URB1 ribosome biogenesis homolog involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr11:30,004,539...30,065,315
Ensembl chr11:30,004,539...30,065,363
JBrowse link
G Wdr12 WD repeat domain 12 involved_in ISO
IBA
ISS
(PMID:16043514)
PMID:21873635
GO_REF:0000024
RGD
UniProt
PMID:16043514 PMID:21873635 GO_REF:0000024, RGD:13792537 NCBI chr 9:61,475,498...61,502,584
Ensembl chr 9:61,475,517...61,502,469
JBrowse link
maturation of 5S rRNA term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Sart1 spliceosome associated factor 1, recruiter of U4/U6.U5 tri-snRNP involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 1:202,690,472...202,699,136
Ensembl chr 1:202,690,459...202,699,136
JBrowse link
maturation of LSU-rRNA term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AABR07007121.1 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 Ensembl chr 1:259,826,698...259,827,548 JBrowse link
G AABR07027819.1 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 Ensembl chr17:43,254,214...43,255,377 JBrowse link
G AABR07029262.1 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 Ensembl chr10:18,291,363...18,292,163 JBrowse link
G AABR07030630.1 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 Ensembl chr10:93,364,092...93,364,568 JBrowse link
G AABR07045321.1 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 Ensembl chr20:40,814,078...40,814,928 JBrowse link
G AABR07049918.1 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 Ensembl chr 5:139,195,914...139,196,714 JBrowse link
G AABR07052519.1 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 Ensembl chr 3:57,334,747...57,335,597 JBrowse link
G AABR07057586.1 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537
G AC128901.1 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 Ensembl chr 4:148,270,351...148,271,151 JBrowse link
G Eif6 eukaryotic translation initiation factor 6 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 3:144,325,038...144,331,396
Ensembl chr 3:144,325,036...144,331,401
JBrowse link
G Las1l LAS1-like, ribosome biogenesis factor involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr  X:60,851,969...60,873,717
Ensembl chr  X:60,851,962...60,873,687
JBrowse link
G LOC100359574 NHP2 non-histone chromosome protein 2-like 1-like involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 1:259,716,062...259,716,923
Ensembl chr 1:259,715,711...259,716,758
JBrowse link
G LOC103690888 60S ribosomal protein L10a-like involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr  X:104,902,239...104,902,979
Ensembl chr  X:104,902,239...104,902,892
JBrowse link
G LOC108349606 60S ribosomal protein L7a-like involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 Ensembl chr18:4,172,029...4,172,931 JBrowse link
G LOC120097172 60S ribosomal protein L7a-like involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr15:42,188,307...42,189,095
Ensembl chr15:42,188,259...42,189,095
JBrowse link
G LOC680700 similar to ribosomal protein L10a involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 5:134,578,540...134,579,373
Ensembl chr 5:134,578,565...134,579,341
JBrowse link
G Mak16 MAK16 homolog involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr16:60,972,699...60,981,250
Ensembl chr16:60,972,697...60,983,243
JBrowse link
G Mrpl1 mitochondrial ribosomal protein L1 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr14:13,300,522...13,359,654
Ensembl chr14:13,300,522...13,359,721
JBrowse link
G Nhp2 NHP2 ribonucleoprotein involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr10:35,877,015...35,880,409
Ensembl chr10:35,877,054...35,882,545
JBrowse link
G Nop2 NOP2 nucleolar protein involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 4:157,932,731...157,944,462
Ensembl chr 4:157,932,716...157,944,459
JBrowse link
G Nsa2 NSA2 ribosome biogenesis factor involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 2:28,443,142...28,449,393
Ensembl chr 2:28,441,269...28,449,388
JBrowse link
G RGD1566078 similar to NHP2-like protein 1 (High mobility group-like nuclear protein 2 homolog 1) (Sperm specific antigen 1) involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr  X:150,624,087...150,624,525
Ensembl chr  X:150,624,087...150,624,473
JBrowse link
G Rpf1 ribosome production factor 1 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 2:235,403,020...235,417,546
Ensembl chr 2:235,403,021...235,417,807
JBrowse link
G Rpl10a ribosomal protein L10A involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr20:6,388,800...6,391,358
Ensembl chr20:6,385,823...6,391,357
JBrowse link
G Rpl7a ribosomal protein L7A involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 3:10,239,026...10,241,703
Ensembl chr 3:10,239,001...10,241,716
JBrowse link
G Rrp15 ribosomal RNA processing 15 homolog involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr13:98,276,276...98,299,357
Ensembl chr13:98,276,134...98,299,370
JBrowse link
G Rsl1d1 ribosomal L1 domain containing 1 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr10:4,424,868...4,436,753
Ensembl chr10:4,397,821...4,439,593
JBrowse link
G Snu13 small nuclear ribonucleoprotein 13 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 7:113,565,903...113,570,871
Ensembl chr 7:113,565,295...113,570,872
JBrowse link
maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AABR07008724.1 involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 Ensembl chr 2:70,904,506...70,905,278 JBrowse link
G AABR07037343.1 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 Ensembl chr  X:18,099,866...18,100,291 JBrowse link
G AC121415.1 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 Ensembl chr16:32,995,363...32,996,204 JBrowse link
G Bop1 BOP1 ribosomal biogenesis factor involved_in ISO
IBA
ISS
(PMID:17353269)
PMID:21873635
GO_REF:0000024
RGD
UniProt
PMID:17353269 PMID:21873635 GO_REF:0000024, RGD:13792537 NCBI chr 7:108,172,062...108,195,875
Ensembl chr 7:108,172,066...108,195,931
JBrowse link
G Ftsj3 FtsJ RNA 2'-O-methyltransferase 3 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr10:91,180,945...91,187,389
Ensembl chr10:91,180,696...91,187,397
JBrowse link
G Gtpbp4 GTP binding protein 4 acts_upstream_of_or_within ISO (MGI:5617283|PMID:25190460) RGD PMID:25190460 MGI:5617283 NCBI chr17:61,308,033...61,328,184
Ensembl chr17:61,308,014...61,418,009
JBrowse link
G LOC103694242 60S ribosomal protein L7 pseudogene involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr16:32,995,281...32,996,164 JBrowse link
G LOC120093238 60S ribosomal protein L35-like involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 6:40,423,594...40,425,165
Ensembl chr 6:40,423,832...40,424,203
JBrowse link
G LOC367050 similar to 60S ribosomal protein L35 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 8:30,634,173...30,634,690
Ensembl chr 8:30,634,325...30,634,690
JBrowse link
G LOC686074 similar to 60S ribosomal protein L35 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr18:23,159,401...23,159,843
Ensembl chr18:23,159,441...23,159,812
JBrowse link
G Nifk nucleolar protein interacting with the FHA domain of MKI67 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr13:29,393,303...29,403,387
Ensembl chr13:29,393,286...29,405,896
JBrowse link
G Pes1 pescadillo ribosomal biogenesis factor 1 involved_in
acts_upstream_of_or_within
IBA
ISO
ISS
PMID:21873635
(MGI:5617283|PMID:25190460)
(PMID:16738141), (PMID:17353269)
GO_REF:0000024
RGD
UniProt
PMID:16738141 PMID:17353269 PMID:25190460 PMID:21873635 GO_REF:0000024 MGI:5617283, RGD:13792537 NCBI chr14:78,850,754...78,867,134
Ensembl chr14:78,850,709...78,867,134
JBrowse link
G RGD1562863 similar to 60S ribosomal protein L35 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr  X:18,099,852...18,100,291
Ensembl chr  X:18,099,866...18,100,291
JBrowse link
G Rpf2 ribosome production factor 2 homolog involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr20:43,630,003...43,651,477
Ensembl chr20:43,629,951...43,651,509
JBrowse link
G Rpl35 ribosomal protein L35 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 3:22,753,255...22,756,217
Ensembl chr 3:22,753,253...22,756,243
JBrowse link
G Rpl7 ribosomal protein L7 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 5:3,217,184...3,220,192 JBrowse link
G Rpl7l1 ribosomal protein L7-like 1 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 9:14,198,101...14,206,119
Ensembl chr 9:14,198,092...14,206,110
JBrowse link
G Urb1 URB1 ribosome biogenesis homolog involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr11:30,004,539...30,065,315
Ensembl chr11:30,004,539...30,065,363
JBrowse link
G Wdr12 WD repeat domain 12 involved_in ISS
IBA
ISO
GO_REF:0000024
PMID:21873635
(PMID:16043514), (PMID:17353269)
UniProt
RGD
PMID:16043514 PMID:17353269 PMID:21873635 GO_REF:0000024, RGD:13792537 NCBI chr 9:61,475,498...61,502,584
Ensembl chr 9:61,475,517...61,502,469
JBrowse link
G Znhit3 zinc finger, HIT-type containing 3 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr10:69,775,885...69,790,471
Ensembl chr10:69,748,789...69,790,475
JBrowse link
G Znhit6 zinc finger, HIT-type containing 6 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 2:234,486,686...234,517,952
Ensembl chr 2:234,486,704...234,517,960
JBrowse link
maturation of SSU-rRNA term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ddx52 DExD-box helicase 52 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr10:68,824,594...68,847,400
Ensembl chr10:68,824,645...68,848,266
JBrowse link
G LOC100359503 ribosomal protein S28-like involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr16:65,888,391...65,888,702
Ensembl chr16:65,888,416...65,888,625
JBrowse link
G LOC100359574 NHP2 non-histone chromosome protein 2-like 1-like involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 1:259,716,062...259,716,923
Ensembl chr 1:259,715,711...259,716,758
JBrowse link
G LOC100360750 Sm protein F-like involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr13:42,114,013...42,116,559
Ensembl chr13:42,114,032...42,116,484
JBrowse link
G LOC108353424 40S ribosomal protein S28 pseudogene involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr20:12,825,455...12,825,905
Ensembl chr20:12,825,606...12,825,815
JBrowse link
G Lsm6 LSM6 homolog, U6 small nuclear RNA and mRNA degradation associated involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr19:29,098,254...29,112,858
Ensembl chr19:29,098,214...29,118,682
Ensembl chr13:29,098,214...29,118,682
JBrowse link
G Nob1 NIN1 (RPN12) binding protein 1 homolog involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr19:35,322,803...35,335,354
Ensembl chr19:35,322,669...35,346,815
JBrowse link
G Nol11 nucleolar protein 11 involved_in IBA
ISO
PMID:21873635
(PMID:22916032)
RGD PMID:22916032 PMID:21873635 RGD:13792537 NCBI chr10:92,119,000...92,141,688
Ensembl chr10:92,121,833...92,141,677
JBrowse link
G Nop14 NOP14 nucleolar protein involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr14:76,081,318...76,102,454
Ensembl chr14:76,080,793...76,102,453
JBrowse link
G RGD1566078 similar to NHP2-like protein 1 (High mobility group-like nuclear protein 2 homolog 1) (Sperm specific antigen 1) involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr  X:150,624,087...150,624,525
Ensembl chr  X:150,624,087...150,624,473
JBrowse link
G Riok1 RIO kinase 1 involved_in IBA
ISO
PMID:21873635
(PMID:22072790)
RGD PMID:22072790 PMID:21873635 RGD:13792537 NCBI chr17:26,767,440...26,789,900
Ensembl chr17:26,766,947...26,789,900
JBrowse link
G Riok2 RIO kinase 2 involved_in ISO
IBA
(PMID:19564402)
PMID:21873635
RGD PMID:19564402 PMID:21873635 RGD:13792537 NCBI chr 1:58,103,132...58,119,397
Ensembl chr 1:58,103,084...58,120,512
JBrowse link
G Riok3 RIO kinase 3 involved_in IBA
ISO
PMID:21873635
(PMID:22418843)
RGD PMID:22418843 PMID:21873635 RGD:13792537 NCBI chr18:3,327,776...3,353,350
Ensembl chr18:3,327,776...3,353,343
JBrowse link
G Rps14 ribosomal protein S14 involved_in ISS GO_REF:0000024 UniProt GO_REF:0000024 NCBI chr18:54,227,854...54,232,638
Ensembl chr18:54,227,854...54,233,166
JBrowse link
G Rps19 ribosomal protein S19 involved_in ISO (PMID:16990592), (PMID:17053056) RGD PMID:16990592 PMID:17053056 NCBI chr 1:80,480,718...80,486,511
Ensembl chr 1:80,480,951...80,486,508
JBrowse link
G Rps28 ribosomal protein S28 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 7:14,607,801...14,609,170
Ensembl chr 7:14,607,801...14,609,170
JBrowse link
G Snu13 small nuclear ribonucleoprotein 13 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 7:113,565,903...113,570,871
Ensembl chr 7:113,565,295...113,570,872
JBrowse link
G Srfbp1 serum response factor binding protein 1 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr18:45,920,389...45,945,385
Ensembl chr18:45,920,446...45,942,515
JBrowse link
G Tsr3 TSR3 ribosome maturation factor involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr10:14,257,150...14,259,712
Ensembl chr10:14,257,171...14,259,561
JBrowse link
G Utp4 UTP4 small subunit processome component involved_in ISO (PMID:22916032) RGD PMID:22916032 NCBI chr19:34,790,962...34,820,558
Ensembl chr19:34,792,457...34,820,550
JBrowse link
G Wdr3 WD repeat domain 3 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 2:187,505,816...187,528,432
Ensembl chr 2:187,505,816...187,528,432
JBrowse link
maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AABR07005506.1 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 Ensembl chr 1:168,338,500...168,339,520 JBrowse link
G AABR07056611.1 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 Ensembl chr 7:25,964,209...25,964,541 JBrowse link
G Bms1 BMS1 ribosome biogenesis factor involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 4:151,558,163...151,595,187
Ensembl chr 4:151,558,163...151,595,127
JBrowse link
G Bysl bystin-like involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
(MGI:3700849|PMID:17242206)
Ensembl
RGD
PMID:17242206 GO_REF:0000107 MGI:3700849 NCBI chr 9:13,382,806...13,392,557
Ensembl chr 9:13,382,557...13,394,339
JBrowse link
G Dcaf13 DDB1 and CUL4 associated factor 13 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 7:70,160,983...70,196,142
Ensembl chr 7:70,160,941...70,196,142
JBrowse link
G Dhx37 DEAH-box helicase 37 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr12:31,194,782...31,214,890
Ensembl chr12:31,194,859...31,216,802
JBrowse link
G Ercc2 ERCC excision repair 2, TFIIH core complex helicase subunit acts_upstream_of_or_within ISO MGI:2183949 (MGI:5496981|PMID:23562818) RGD PMID:23562818 MGI:5496981 NCBI chr 1:79,033,342...79,047,102
Ensembl chr 1:79,033,326...79,047,102
JBrowse link
G Gtf2h5 general transcription factor IIH subunit 5 acts_upstream_of_or_within ISO MGI:5514340 (MGI:5496981|PMID:23562818) RGD PMID:23562818 MGI:5496981 NCBI chr 1:46,656,804...46,663,512
Ensembl chr 1:46,656,859...46,664,939
JBrowse link
G Heatr1 HEAT repeat containing 1 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr17:58,051,700...58,093,895
Ensembl chr17:58,051,700...58,093,948
JBrowse link
G Helb DNA helicase B involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 7:55,588,510...55,615,979
Ensembl chr 7:55,588,798...55,615,585
JBrowse link
G LOC100363452 ribosomal protein S8-like involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 3:98,586,109...98,586,784
Ensembl chr 3:98,586,108...98,586,808
JBrowse link
G LOC100911847 40S ribosomal protein S14-like involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 5:138,350,191...138,350,766 JBrowse link
G LOC102548369 40S ribosomal protein S16-like involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr15:92,259,763...92,260,218
Ensembl chr15:92,259,763...92,260,203
JBrowse link
G LOC120101650 40S ribosomal protein S14-like involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 3:112,838,842...112,839,309
Ensembl chr 3:112,838,854...112,839,309
JBrowse link
G LOC297756 ribosomal protein S8-like involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 5:3,392,846...3,393,523
Ensembl chr 5:3,389,210...3,393,500
JBrowse link
G Mrps11 mitochondrial ribosomal protein S11 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 1:132,707,601...132,717,253
Ensembl chr 1:132,680,420...132,717,253
JBrowse link
G Ngdn neuroguidin involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr15:28,489,950...28,497,286
Ensembl chr15:28,490,040...28,519,654
JBrowse link
G Nol10 nucleolar protein 10 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 6:40,144,217...40,225,353
Ensembl chr 6:40,144,235...40,225,353
JBrowse link
G Pwp2 PWP2, small subunit processome component involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr20:10,499,332...10,512,965
Ensembl chr20:10,499,363...10,513,640
JBrowse link
G RGD1561137 similar to 40S ribosomal protein S16 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 3:21,494,155...21,494,684
Ensembl chr 3:21,494,203...21,494,676
JBrowse link
G RGD1566369 similar to ribosomal protein S8 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr17:83,759,360...83,760,027
Ensembl chr17:83,759,369...83,760,019
JBrowse link
G Rps14 ribosomal protein S14 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr18:54,227,854...54,232,638
Ensembl chr18:54,227,854...54,233,166
JBrowse link
G Rps16 ribosomal protein S16 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 1:83,643,066...83,646,056
Ensembl chr 1:83,643,130...83,646,206
JBrowse link
G Rps19 ribosomal protein S19 involved_in ISO (PMID:16990592), (PMID:17053056) RGD PMID:16990592 PMID:17053056 NCBI chr 1:80,480,718...80,486,511
Ensembl chr 1:80,480,951...80,486,508
JBrowse link
G Rps8 ribosomal protein S8 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 5:130,630,362...130,632,932
Ensembl chr 5:130,629,716...130,633,268
JBrowse link
G Rrp36 ribosomal RNA processing 36 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 9:14,308,810...14,316,959
Ensembl chr 9:14,308,982...14,316,110
JBrowse link
G Slx9 SLX9 ribosome biogenesis factor involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr20:11,114,632...11,147,532
Ensembl chr20:11,114,589...11,147,521
JBrowse link
G Tsr1 TSR1, ribosome maturation factor involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr10:59,760,420...59,771,868
Ensembl chr10:59,760,409...59,771,864
JBrowse link
G Utp25 UTP25 small subunit processome component involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr13:104,630,390...104,651,681
Ensembl chr13:104,630,391...104,651,662
JBrowse link
G Utp3 UTP3, small subunit processome component involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr14:19,515,716...19,517,370
Ensembl chr14:19,515,669...19,517,396
JBrowse link
G Utp4 UTP4 small subunit processome component involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr19:34,790,962...34,820,558
Ensembl chr19:34,792,457...34,820,550
JBrowse link
G Utp6 UTP6 small subunit processome component involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr10:64,897,321...64,928,105
Ensembl chr10:64,897,328...64,927,997
JBrowse link
G Wdr43 WD repeat domain 43 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 6:23,845,499...23,884,846
Ensembl chr 6:23,845,499...23,884,846
JBrowse link
mature ribosome assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G C1qbp complement C1q binding protein involved_in ISO
IBA
ISS
(PMID:21536856)
PMID:21873635
(MGI:5487496|PMID:22904065)
GO_REF:0000024
RGD
UniProt
PMID:21536856 PMID:22904065 PMID:21873635 GO_REF:0000024 MGI:5487496, RGD:13792537 NCBI chr10:55,699,954...55,704,605
Ensembl chr10:55,699,954...55,704,649
JBrowse link
G Ddx3x DEAD-box helicase 3, X-linked involved_in ISO (PMID:22323517) RGD PMID:22323517 NCBI chr  X:9,479,532...9,493,455
Ensembl chr  X:9,479,532...9,493,168
JBrowse link
G Efl1 elongation factor like GTPase 1 involved_in ISO
IBA
(PMID:21536732)
PMID:21873635
RGD PMID:21536732 PMID:21873635 RGD:13792537 NCBI chr 1:136,638,527...136,763,518
Ensembl chr 1:136,638,527...136,763,518
JBrowse link
G Eif6 eukaryotic translation initiation factor 6 involved_in ISO
IEA
(PMID:21536732)
GO_REF:0000104
RGD
UniProt
PMID:21536732 GO_REF:0000104 NCBI chr 3:144,325,038...144,331,396
Ensembl chr 3:144,325,036...144,331,401
JBrowse link
G Nsun4 NOP2/Sun RNA methyltransferase 4 involved_in ISO (MGI:5573024|PMID:24516400) RGD PMID:24516400 MGI:5573024 NCBI chr 5:129,511,224...129,532,498
Ensembl chr 5:129,512,307...129,532,423
JBrowse link
G Sbds Sbds, ribosome maturation factor involved_in ISO
ISS
(PMID:21536732)
GO_REF:0000024
RGD
UniProt
PMID:21536732 GO_REF:0000024 NCBI chr12:26,420,410...26,429,650
Ensembl chr12:26,420,414...26,429,649
JBrowse link
mitochondrial large ribosomal subunit assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ddx28 DEAD-box helicase 28 involved_in ISO
IBA
(PMID:25683715)
PMID:21873635
RGD PMID:25683715 PMID:21873635 RGD:13792537 NCBI chr19:33,909,799...33,911,729
Ensembl chr19:33,909,801...33,911,742
JBrowse link
G Dhx30 DExH-box helicase 30 involved_in ISO
ISS
(PMID:25683715)
GO_REF:0000024
RGD
UniProt
PMID:25683715 GO_REF:0000024 NCBI chr 8:110,064,751...110,096,954
Ensembl chr 8:110,064,752...110,097,381
JBrowse link
G Fastkd2 FAST kinase domains 2 involved_in IEA
ISS
ISO
GO_REF:0000107
GO_REF:0000024
(PMID:25683715)
Ensembl
UniProt
RGD
PMID:25683715 GO_REF:0000024 GO_REF:0000107 NCBI chr 9:65,166,148...65,188,184
Ensembl chr 9:65,168,228...65,188,174
JBrowse link
G Mrm2 mitochondrial rRNA methyltransferase 2 involved_in ISO
IEA
(PMID:35177605)
GO_REF:0000107
RGD
Ensembl
PMID:35177605 GO_REF:0000107 NCBI chr12:14,309,556...14,314,759
Ensembl chr12:14,251,941...14,314,118
JBrowse link
mitochondrial ribosome assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Mpv17l2 MPV17 mitochondrial inner membrane protein like 2 involved_in IBA
ISO
PMID:21873635
(PMID:24948607)
RGD PMID:24948607 PMID:21873635 RGD:13792537 NCBI chr16:18,680,106...18,684,212
Ensembl chr16:18,681,826...18,684,212
JBrowse link
G Mrps2 mitochondrial ribosomal protein S2 involved_in ISO (PMID:29576219) RGD PMID:29576219 NCBI chr 3:11,801,310...11,806,341
Ensembl chr 3:11,801,310...11,806,313
JBrowse link
G Mterf3 mitochondrial transcription termination factor 3 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 7:63,826,418...63,844,747
Ensembl chr 7:63,826,427...63,844,658
JBrowse link
G Ngrn neugrin, neurite outgrowth associated involved_in ISO
ISS
(PMID:27667664)
GO_REF:0000024
RGD
UniProt
PMID:27667664 GO_REF:0000024 NCBI chr 1:134,213,235...134,219,348
Ensembl chr 1:134,213,456...134,219,339
JBrowse link
negative regulation of ribosome biogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Malsu1 mitochondrial assembly of ribosomal large subunit 1 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 4:78,051,090...78,059,913
Ensembl chr 4:78,051,059...78,059,905
JBrowse link
G Pten phosphatase and tensin homolog involved_in ISO (MGI:3772418|PMID:18082964) RGD PMID:18082964 MGI:3772418 NCBI chr 1:230,631,303...230,696,754
Ensembl chr 1:230,630,338...230,696,838
JBrowse link
negative regulation of rRNA processing term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Kat2b lysine acetyltransferase 2B involved_in ISO (PMID:26867678) RGD PMID:26867678 NCBI chr 9:6,562,525...6,667,064
Ensembl chr 9:6,562,288...6,667,064
JBrowse link
G Shq1 SHQ1, H/ACA ribonucleoprotein assembly factor acts_upstream_of_or_within ISO (PMID:20663920) RGD PMID:20663920 NCBI chr 4:133,213,357...133,305,586
Ensembl chr 4:133,213,361...133,305,586
JBrowse link
positive regulation of ribosomal small subunit export from nucleus term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Riok2 RIO kinase 2 involved_in ISO (PMID:19564402) RGD PMID:19564402 NCBI chr 1:58,103,132...58,119,397
Ensembl chr 1:58,103,084...58,120,512
JBrowse link
positive regulation of rRNA processing term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bud23 BUD23, rRNA methyltransferase and ribosome maturation factor involved_in ISO (PMID:25851604) RGD PMID:25851604 NCBI chr12:21,629,551...21,640,758
Ensembl chr12:21,629,536...21,640,751
JBrowse link
G Dimt1 DIM1 rRNA methyltransferase and ribosome maturation factor involved_in ISO (PMID:25851604) RGD PMID:25851604 NCBI chr 2:38,343,086...38,366,760
Ensembl chr 2:38,354,854...38,368,227
JBrowse link
G Heatr1 HEAT repeat containing 1 involved_in ISO (PMID:17699751) RGD PMID:17699751 NCBI chr17:58,051,700...58,093,895
Ensembl chr17:58,051,700...58,093,948
JBrowse link
G Riok1 RIO kinase 1 involved_in ISO (PMID:22072790) RGD PMID:22072790 NCBI chr17:26,767,440...26,789,900
Ensembl chr17:26,766,947...26,789,900
JBrowse link
G Riok2 RIO kinase 2 involved_in ISO (PMID:19564402) RGD PMID:19564402 NCBI chr 1:58,103,132...58,119,397
Ensembl chr 1:58,103,084...58,120,512
JBrowse link
G Sirt7 sirtuin 7 involved_in ISO
ISS
(PMID:26867678)
GO_REF:0000024
RGD
UniProt
PMID:26867678 GO_REF:0000024 NCBI chr10:105,896,476...105,903,301
Ensembl chr10:105,896,476...105,903,172
JBrowse link
G Trmt112 tRNA methyltransferase activator subunit 11-2 involved_in ISO (PMID:25851604) RGD PMID:25851604 NCBI chr 1:204,103,298...204,104,151 JBrowse link
G Utp15 UTP15, small subunit processome component involved_in ISO (PMID:17699751) RGD PMID:17699751 NCBI chr 2:29,594,405...29,612,819
Ensembl chr 2:29,594,941...29,612,773
JBrowse link
G Wdr43 WD repeat domain 43 involved_in ISO (PMID:17699751) RGD PMID:17699751 NCBI chr 6:23,845,499...23,884,846
Ensembl chr 6:23,845,499...23,884,846
JBrowse link
G Wdr75 WD repeat domain 75 involved_in ISO
IBA
(PMID:17699751)
PMID:21873635
RGD PMID:17699751 PMID:21873635 RGD:13792537 NCBI chr 9:47,903,166...47,933,399
Ensembl chr 9:47,903,200...47,933,399
JBrowse link
regulation of ribosomal subunit export from nucleus term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Mdn1 midasin AAA ATPase 1 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 5:47,055,435...47,190,426
Ensembl chr 5:47,055,447...47,186,332
JBrowse link
regulation of ribosome biogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gpatch4 G patch domain containing 4 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 2:173,499,700...173,520,346
Ensembl chr 2:173,509,897...173,518,684
JBrowse link
G Mettl18 methyltransferase like 18 involved_in ISS
ISO
GO_REF:0000024
(PMID:33693809)
UniProt
RGD
PMID:33693809 GO_REF:0000024 NCBI chr13:76,345,888...76,348,798
Ensembl chr13:76,345,957...76,348,836
JBrowse link
G Pinx1 PIN2/TERF1 interacting, telomerase inhibitor 1 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr15:38,098,027...38,157,143
Ensembl chr15:38,097,886...38,157,140
JBrowse link
regulation of rRNA processing term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Mettl18 methyltransferase like 18 involved_in ISS
ISO
GO_REF:0000024
(PMID:33693809)
UniProt
RGD
PMID:33693809 GO_REF:0000024 NCBI chr13:76,345,888...76,348,798
Ensembl chr13:76,345,957...76,348,836
JBrowse link
G Ncl nucleolin IDA RGD PMID:2049089 RGD:9588272 NCBI chr 9:86,999,588...87,008,112
Ensembl chr 9:86,998,019...87,008,136
JBrowse link
G Usp36 ubiquitin specific peptidase 36 involved_in ISO (PMID:19208757)
(MGI:6117526|PMID:29273634)
RGD PMID:19208757 PMID:29273634 MGI:6117526 NCBI chr10:103,497,349...103,528,877
Ensembl chr10:103,497,349...103,528,877
JBrowse link
G Ythdf2 YTH N(6)-methyladenosine RNA binding protein 2 involved_in ISO (PMID:31815440) RGD PMID:31815440 NCBI chr 5:144,381,426...144,407,126
Ensembl chr 5:144,381,431...144,408,144
JBrowse link
ribosomal large subunit assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AABR07018050.1 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 Ensembl chr15:31,302,329...31,302,979 JBrowse link
G AC120310.1 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 Ensembl chr17:15,111,186...15,112,040 JBrowse link
G AC123138.1 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 Ensembl chr 4:46,146,917...46,147,919 JBrowse link
G Bop1 BOP1 ribosomal biogenesis factor involved_in ISO (PMID:24120868) RGD PMID:24120868 NCBI chr 7:108,172,062...108,195,875
Ensembl chr 7:108,172,066...108,195,931
JBrowse link
G Brix1 biogenesis of ribosomes BRX1 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 2:59,450,608...59,461,486
Ensembl chr 2:59,450,614...59,461,495
JBrowse link
G LOC100911018 60S ribosomal protein L6-like involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr17:15,111,153...15,112,082
Ensembl chr17:15,111,186...15,112,040
JBrowse link
G LOC108352551 60S ribosomal protein L23a pseudogene involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr13:63,894,996...63,895,471
Ensembl chr13:63,894,996...63,895,466
JBrowse link
G LOC680441 similar to 60S ribosomal protein L23a involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 4:149,492,385...149,492,849
Ensembl chr 4:149,492,385...149,492,849
JBrowse link
G LOC690335 similar to 60S ribosomal protein L23a involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 6:91,707,271...91,707,812
Ensembl chr15:31,302,329...31,302,979
JBrowse link
G Mdn1 midasin AAA ATPase 1 involved_in ISO
IBA
(PMID:27814492)
PMID:21873635
RGD PMID:27814492 PMID:21873635 RGD:13792537 NCBI chr 5:47,055,435...47,190,426
Ensembl chr 5:47,055,447...47,186,332
JBrowse link
G Mrpl20 mitochondrial ribosomal protein L20 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 5:166,408,962...166,413,492
Ensembl chr 5:166,408,962...166,413,492
JBrowse link
G Mrto4 mRNA turnover 4, ribosome maturation factor involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 5:151,601,780...151,608,549
Ensembl chr 5:151,601,780...151,608,287
JBrowse link
G Nop2 NOP2 nucleolar protein involved_in ISO (PMID:24120868) RGD PMID:24120868 NCBI chr 4:157,932,731...157,944,462
Ensembl chr 4:157,932,716...157,944,459
JBrowse link
G Nop53 NOP53 ribosome biogenesis factor involved_in ISO
IBA
(PMID:24120868)
PMID:21873635
RGD PMID:24120868 PMID:21873635 RGD:13792537 NCBI chr 1:76,629,084...76,636,902
Ensembl chr 1:76,629,069...76,636,902
JBrowse link
G Ppan peter pan homolog involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 8:19,423,908...19,427,941
Ensembl chr 8:19,423,961...19,427,938
JBrowse link
G RGD1564606 similar to 60S ribosomal protein L23a involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 2:38,452,814...38,453,384
Ensembl chr 2:38,451,401...38,453,417
JBrowse link
G RGD1565170 similar to 60S ribosomal protein L23a involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr15:31,302,164...31,302,986
Ensembl chr15:31,302,329...31,302,979
JBrowse link
G Rpf2 ribosome production factor 2 homolog involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr20:43,630,003...43,651,477
Ensembl chr20:43,629,951...43,651,509
JBrowse link
G Rpl10 ribosomal protein L10 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr  X:152,054,547...152,056,757
Ensembl chr  X:152,054,452...152,056,761
JBrowse link
G Rpl10l ribosomal protein L10-like involved_in ISO (MGI:6835429|PMID:28502657) RGD PMID:28502657 MGI:6835429 NCBI chr 6:84,544,771...84,545,863
Ensembl chr 6:84,543,540...84,545,816
JBrowse link
G Rpl11 ribosomal protein L11 involved_in ISO (PMID:24120868) RGD PMID:24120868 NCBI chr 5:148,274,060...148,277,708
Ensembl chr 5:148,274,069...148,277,599
JBrowse link
G Rpl23a ribosomal protein L23A involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr10:63,076,660...63,079,346
Ensembl chr10:63,076,066...63,079,346
JBrowse link
G Rpl24 ribosomal protein L24 acts_upstream_of_or_within ISO MGI:1856685 (MGI:3051697|PMID:15289434) RGD PMID:15289434 MGI:3051697 NCBI chr11:44,653,937...44,659,346
Ensembl chr11:44,653,937...44,659,370
JBrowse link
G Rpl5 ribosomal protein L5 involved_in ISO
IBA
(PMID:24120868)
PMID:21873635
RGD PMID:24120868 PMID:21873635 RGD:13792537 NCBI chr14:1,843,856...1,850,301
Ensembl chr14:1,843,770...1,850,290
JBrowse link
G Rpl6 ribosomal protein L6 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr12:35,347,493...35,352,011
Ensembl chr12:35,347,497...35,351,921
JBrowse link
G Rplp0 ribosomal protein lateral stalk subunit P0 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr12:41,054,363...41,057,632
Ensembl chr12:41,054,179...41,057,632
JBrowse link
G Rplp0l1 ribosomal protein lateral stalk subunit P0 like 1 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 2:191,921,503...191,922,661
Ensembl chr 2:191,921,574...191,922,646
JBrowse link
G Rrs1 ribosome biogenesis regulator 1 homolog involved_in ISO
ISS
(PMID:24120868)
GO_REF:0000024
RGD
UniProt
PMID:24120868 GO_REF:0000024 NCBI chr 5:9,733,486...9,735,119
Ensembl chr 5:9,733,091...9,735,140
JBrowse link
ribosomal large subunit biogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AABR07007744.2 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 Ensembl chr 2:27,601,232...27,601,825 JBrowse link
G AABR07025089.1 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 Ensembl chr16:26,091,905...26,186,434 JBrowse link
G AABR07041089.1 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 Ensembl chr  X:111,554,752...111,557,411 JBrowse link
G AABR07055527.1 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 Ensembl chr 7:4,352,572...4,353,409 JBrowse link
G AABR07058519.1 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 Ensembl chr 7:112,264,153...112,264,590 JBrowse link
G AC094217.1 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537
G Bop1 BOP1 ribosomal biogenesis factor acts_upstream_of_or_within ISO (MGI:1860667|PMID:10891491) RGD PMID:10891491 MGI:1860667 NCBI chr 7:108,172,062...108,195,875
Ensembl chr 7:108,172,066...108,195,931
JBrowse link
G Ebna1bp2 EBNA1 binding protein 2 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 5:132,148,164...132,152,730
Ensembl chr 5:132,148,143...132,153,267
JBrowse link
G Eif6 eukaryotic translation initiation factor 6 involved_in IEA GO_REF:0000104 UniProt GO_REF:0000104 NCBI chr 3:144,325,038...144,331,396
Ensembl chr 3:144,325,036...144,331,401
JBrowse link
G Gtf3a general transcription factor III A involved_in ISO
ISS
IEA
(PMID:24120868)
GO_REF:0000024
GO_REF:0000107
RGD
UniProt
Ensembl
PMID:24120868 GO_REF:0000024 GO_REF:0000107 NCBI chr12:8,136,746...8,144,690
Ensembl chr12:8,136,747...8,144,690
JBrowse link
G Gtpbp4 GTP binding protein 4 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr17:61,308,033...61,328,184
Ensembl chr17:61,308,014...61,418,009
JBrowse link
G Heatr3 HEAT repeat containing 3 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr19:18,892,477...18,930,502
Ensembl chr19:18,893,144...18,930,509
JBrowse link
G LOC103690996 uncharacterized LOC103690996 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr12:6,072,279...6,072,780
Ensembl chr12:6,072,271...6,074,618
JBrowse link
G LOC108348509 60S ribosomal protein L35a pseudogene involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr17:10,477,818...10,478,314
Ensembl chr17:10,477,880...10,478,212
JBrowse link
G LOC108349682 60S ribosomal protein L35a involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 1:201,440,417...201,440,862 JBrowse link
G LOC108350427 60S ribosomal protein L35a pseudogene involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 3:92,369,741...92,370,081
Ensembl chr 3:92,369,742...92,370,074
JBrowse link
G LOC108351255 60S ribosomal protein L35a pseudogene involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 6:91,644,302...91,644,739
Ensembl chr 6:91,644,365...91,644,697
JBrowse link
G LOC108352207 60S ribosomal protein L35a pseudogene involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr10:66,210,063...66,210,640
Ensembl chr10:66,210,276...66,210,608
JBrowse link
G LOC306079 similar to RIKEN cDNA 3100001N19 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr15:55,520,332...55,531,842
Ensembl chr15:55,520,332...55,531,842
JBrowse link
G LOC680579 similar to ribosomal protein L14 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr14:42,594,039...42,594,681
Ensembl chr14:42,594,039...42,594,665
JBrowse link
G Lto1 LTO1 maturation factor of ABCE1 involved_in ISO (PMID:23318452) RGD PMID:23318452 NCBI chr 1:200,074,247...200,080,951
Ensembl chr 1:200,074,253...200,088,061
JBrowse link
G Malsu1 mitochondrial assembly of ribosomal large subunit 1 involved_in ISO (PMID:22238376) RGD PMID:22238376 NCBI chr 4:78,051,090...78,059,913
Ensembl chr 4:78,051,059...78,059,905
JBrowse link
G Mrto4 mRNA turnover 4, ribosome maturation factor involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 5:151,601,780...151,608,549
Ensembl chr 5:151,601,780...151,608,287
JBrowse link
G Nip7 nucleolar pre-rRNA processing protein NIP7 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr19:34,962,557...34,964,700
Ensembl chr19:34,962,557...34,964,711
JBrowse link
G Nle1 notchless homolog 1 acts_upstream_of_or_within ISO MGI:3624778 (MGI:5529547|PMID:24062412) RGD PMID:24062412 MGI:5529547 NCBI chr10:67,834,059...67,844,771
Ensembl chr10:67,834,062...67,842,658
JBrowse link
G Noc2l NOC2-like nucleolar associated transcriptional repressor involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 5:166,820,075...166,831,951
Ensembl chr 5:166,820,161...166,831,949
JBrowse link
G Nop16 NOP16 nucleolar protein involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr17:10,022,950...10,027,867
Ensembl chr17:10,022,932...10,027,867
JBrowse link
G Npm1 nucleophosmin 1 involved_in
acts_upstream_of_or_within
IBA
ISO
PMID:21873635
(MGI:3822232|PMID:18809582)
RGD PMID:18809582 PMID:21873635 MGI:3822232, RGD:13792537 NCBI chr10:17,741,512...17,751,626
Ensembl chr10:17,739,941...17,751,645
JBrowse link
G Nvl nuclear VCP-like involved_in ISO (PMID:26166824), (PMID:26456651) RGD PMID:26166824 PMID:26456651 NCBI chr13:92,851,023...92,906,749
Ensembl chr13:92,853,650...92,906,049
JBrowse link
G Pak1ip1 PAK1 interacting protein 1 involved_in ISO (PMID:24120868) RGD PMID:24120868 NCBI chr17:23,742,217...23,753,325
Ensembl chr17:23,741,414...23,753,324
JBrowse link
G Rpf2 ribosome production factor 2 homolog involved_in ISO (PMID:24120868) RGD PMID:24120868 NCBI chr20:43,630,003...43,651,477
Ensembl chr20:43,629,951...43,651,509
JBrowse link
G Rpl11 ribosomal protein L11 involved_in ISO (PMID:18697920) RGD PMID:18697920 NCBI chr 5:148,274,060...148,277,708
Ensembl chr 5:148,274,069...148,277,599
JBrowse link
G Rpl14 ribosomal protein L14 involved_in ISO
IBA
(PMID:18697920)
PMID:21873635
RGD PMID:18697920 PMID:21873635 RGD:13792537 NCBI chr 8:120,286,035...120,288,912
Ensembl chr 8:120,284,645...120,289,064
JBrowse link
G Rpl26 ribosomal protein L26 involved_in ISO
IBA
IEA
(PMID:18697920)
PMID:21873635
GO_REF:0000107
RGD
Ensembl
PMID:18697920 PMID:21873635 GO_REF:0000107, RGD:13792537 NCBI chr10:53,610,836...53,613,966
Ensembl chr10:53,610,421...53,613,966
JBrowse link
G Rpl26-ps1 ribosomal protein L26, pseudogene 1 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 7:112,264,114...112,264,619
Ensembl chr 7:112,264,153...112,264,590
JBrowse link
G Rpl26-ps3 ribosomal protein L26, pseudogene 3 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr19:9,025,282...9,025,776 JBrowse link
G Rpl35a ribosomal protein L35A involved_in ISO
IBA
(PMID:18697920)
PMID:21873635
RGD PMID:18697920 PMID:21873635 RGD:13792537 NCBI chr11:67,726,034...67,730,023
Ensembl chr11:67,726,032...67,729,942
JBrowse link
G Rpl5 ribosomal protein L5 involved_in ISO (PMID:18697920) RGD PMID:18697920 NCBI chr14:1,843,856...1,850,301
Ensembl chr14:1,843,770...1,850,290
JBrowse link
G Rpl7 ribosomal protein L7 involved_in ISO (PMID:18697920) RGD PMID:18697920 NCBI chr 5:3,217,184...3,220,192 JBrowse link
G Rrs1 ribosome biogenesis regulator 1 homolog involved_in ISO
IBA
(PMID:24120868)
PMID:21873635
RGD PMID:24120868 PMID:21873635 RGD:13792537 NCBI chr 5:9,733,486...9,735,119
Ensembl chr 5:9,733,091...9,735,140
JBrowse link
G Rsl24d1 ribosomal L24 domain containing 1 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 8:73,852,991...73,861,996
Ensembl chr 8:73,852,996...73,862,001
JBrowse link
G Sdad1 SDA1 domain containing 1 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr14:15,741,489...15,768,270
Ensembl chr14:15,741,434...15,771,066
JBrowse link
G Wdr74 WD repeat domain 74 involved_in IBA
ISO
PMID:21873635
(PMID:26456651)
RGD PMID:26456651 PMID:21873635 RGD:13792537 NCBI chr 1:205,631,769...205,636,563
Ensembl chr 1:205,631,824...205,636,563
JBrowse link
G Zfp622 zinc finger protein 622 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 2:76,479,605...76,494,405
Ensembl chr 2:76,335,609...76,493,898
JBrowse link
ribosomal large subunit export from nucleus term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AABR07007744.2 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 Ensembl chr 2:27,601,232...27,601,825 JBrowse link
G AABR07025089.1 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 Ensembl chr16:26,091,905...26,186,434 JBrowse link
G AABR07041089.1 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 Ensembl chr  X:111,554,752...111,557,411 JBrowse link
G AABR07055527.1 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 Ensembl chr 7:4,352,572...4,353,409 JBrowse link
G Nmd3 NMD3 ribosome export adaptor involved_in IBA
ISO
PMID:21873635
(PMID:12773398)
RGD PMID:12773398 PMID:21873635 RGD:13792537 NCBI chr 2:154,012,973...154,038,466
Ensembl chr 2:154,013,020...154,039,259
JBrowse link
G Npm1 nucleophosmin 1 involved_in
acts_upstream_of_or_within
IBA
ISO
PMID:21873635
(MGI:3822232|PMID:18809582)
RGD PMID:18809582 PMID:21873635 MGI:3822232, RGD:13792537 NCBI chr10:17,741,512...17,751,626
Ensembl chr10:17,739,941...17,751,645
JBrowse link
G Nup88 nucleoporin 88 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr10:55,667,903...55,692,249
Ensembl chr10:55,667,906...55,692,257
JBrowse link
G Ran RAN, member RAS oncogene family involved_in ISO (PMID:12773398) RGD PMID:12773398 NCBI chr12:27,674,049...27,678,598
Ensembl chr12:27,674,050...27,678,276
JBrowse link
G Rrs1 ribosome biogenesis regulator 1 homolog involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 5:9,733,486...9,735,119
Ensembl chr 5:9,733,091...9,735,140
JBrowse link
G Sdad1 SDA1 domain containing 1 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr14:15,741,489...15,768,270
Ensembl chr14:15,741,434...15,771,066
JBrowse link
G Xpo1 exportin 1 involved_in ISO
IBA
(PMID:12773398)
PMID:21873635
RGD PMID:12773398 PMID:21873635 RGD:13792537 NCBI chr14:97,233,263...97,275,536
Ensembl chr14:97,233,270...97,275,498
JBrowse link
ribosomal small subunit assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AABR07005506.1 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 Ensembl chr 1:168,338,500...168,339,520 JBrowse link
G AABR07005886.1 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 Ensembl chr 1:186,877,655...186,881,977 JBrowse link
G AABR07028859.1 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 Ensembl chr17:84,754,643...84,755,185 JBrowse link
G AABR07040944.1 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 Ensembl chr  X:107,697,440...107,698,439 JBrowse link
G AABR07056611.1 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 Ensembl chr 7:25,964,209...25,964,541 JBrowse link
G AC128207.2 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 Ensembl chr 7:966,426...966,860 JBrowse link
G Eral1 Era-like 12S mitochondrial rRNA chaperone 1 involved_in ISO
IBA
ISS
(PMID:20604745), (PMID:28449065)
PMID:21873635
GO_REF:0000024
RGD
UniProt
PMID:20604745 PMID:28449065 PMID:21873635 GO_REF:0000024, RGD:13792537 NCBI chr10:62,961,729...62,968,766
Ensembl chr10:62,961,730...62,968,994
JBrowse link
G Fau FAU, ubiquitin like and ribosomal protein S30 fusion involved_in ISO (PMID:34318747) RGD PMID:34318747 NCBI chr 1:203,350,226...203,351,741
Ensembl chr 1:203,350,189...203,351,742
JBrowse link
G LOC100359503 ribosomal protein S28-like involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr16:65,888,391...65,888,702
Ensembl chr16:65,888,416...65,888,625
JBrowse link
G LOC100360843 ribosomal protein S19-like involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 1:76,610,075...76,610,605
Ensembl chr 1:76,610,099...76,610,606
JBrowse link
G LOC100362987 ribosomal protein S27-like involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 9:1,154,781...1,157,065
Ensembl chr 9:1,154,987...1,155,443
JBrowse link
G LOC100911847 40S ribosomal protein S14-like involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 5:138,350,191...138,350,766 JBrowse link
G LOC108348601 40S ribosomal protein S19 pseudogene involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr17:84,754,704...84,755,185
Ensembl chr17:84,754,643...84,755,185
JBrowse link
G LOC108353424 40S ribosomal protein S28 pseudogene involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr20:12,825,455...12,825,905
Ensembl chr20:12,825,606...12,825,815
JBrowse link
G LOC120095010 40S ribosomal protein S19-like involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr10:2,641,423...2,645,350
Ensembl chr10:2,642,638...2,643,075
JBrowse link
G LOC120101650 40S ribosomal protein S14-like involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 3:112,838,842...112,839,309
Ensembl chr 3:112,838,854...112,839,309
JBrowse link
G LOC500594 LRRGT00162 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 5:162,961,708...162,966,537
Ensembl chr 5:162,961,708...162,966,537
JBrowse link
G Mrps11 mitochondrial ribosomal protein S11 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 1:132,707,601...132,717,253
Ensembl chr 1:132,680,420...132,717,253
JBrowse link
G Mrps7 mitochondrial ribosomal protein S7 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr10:100,843,691...100,846,838
Ensembl chr10:100,843,356...100,847,129
JBrowse link
G Pwp2 PWP2, small subunit processome component involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr20:10,499,332...10,512,965
Ensembl chr20:10,499,363...10,513,640
JBrowse link
G Rps10 ribosomal protein S10 IMP RGD PMID:3378620 RGD:2299075 NCBI chr20:5,694,313...5,698,922
Ensembl chr20:5,694,313...5,699,044
JBrowse link
G Rps14 ribosomal protein S14 involved_in IMP
IBA
ISS
ISO
PMID:21873635
GO_REF:0000024
(PMID:9152021)
UniProt
RGD
PMID:9152021 PMID:3378620 PMID:21873635 GO_REF:0000024, RGD:2299075, RGD:13792537 NCBI chr18:54,227,854...54,232,638
Ensembl chr18:54,227,854...54,233,166
JBrowse link
G Rps15 ribosomal protein S15 involved_in IMP
IBA
PMID:21873635 RGD
GO_Central
PMID:3378620 PMID:21873635 RGD:2299075, RGD:13792537 NCBI chr 7:9,416,003...9,417,442
Ensembl chr 7:9,416,004...9,417,450
JBrowse link
G Rps15-ps2 ribosomal protein S15, pseudogene 2 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 7:966,395...966,881 JBrowse link
G Rps19 ribosomal protein S19 involved_in IBA
ISO
PMID:21873635
(PMID:17053056)
RGD PMID:17053056 PMID:21873635 RGD:13792537 NCBI chr 1:80,480,718...80,486,511
Ensembl chr 1:80,480,951...80,486,508
JBrowse link
G Rps19l1 ribosomal protein S19-like 1 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 7:102,435,651...102,436,177
Ensembl chr 7:102,435,666...102,436,278
JBrowse link
G Rps2 ribosomal protein S2 IMP RGD PMID:3378620 RGD:2299075 NCBI chr10:13,747,316...13,749,165
Ensembl chr10:13,747,301...13,749,163
JBrowse link
G Rps25 ribosomal protein s25 IMP RGD PMID:3378620 RGD:2299075 NCBI chr 8:44,733,623...44,735,999
Ensembl chr 8:44,733,029...44,737,271
JBrowse link
G Rps27 ribosomal protein S27 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 2:175,665,858...175,666,963
Ensembl chr 2:175,665,853...175,666,964
JBrowse link
G Rps27l ribosomal protein S27-like involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 8:67,562,483...67,567,418
Ensembl chr 8:67,562,483...67,567,418
JBrowse link
G Rps28 ribosomal protein S28 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 7:14,607,801...14,609,170
Ensembl chr 7:14,607,801...14,609,170
JBrowse link
G Rps5 ribosomal protein S5 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 1:73,538,776...73,543,073
Ensembl chr 1:73,538,776...73,543,073
JBrowse link
G Rps6 ribosomal protein S6 IMP RGD PMID:3378620 RGD:2299075 NCBI chr 5:101,371,716...101,374,576
Ensembl chr 5:101,371,136...101,374,602
Ensembl chr 5:101,371,136...101,374,602
JBrowse link
G Rpsa ribosomal protein SA involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 8:119,851,225...119,855,103
Ensembl chr 8:119,851,225...119,855,247
JBrowse link
G Rrp7a ribosomal RNA processing 7 homolog A involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 7:114,262,929...114,272,817
Ensembl chr 7:114,256,472...114,272,817
JBrowse link
ribosomal small subunit biogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AABR07007744.2 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 Ensembl chr 2:27,601,232...27,601,825 JBrowse link
G AABR07025089.1 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 Ensembl chr16:26,091,905...26,186,434 JBrowse link
G AABR07041089.1 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 Ensembl chr  X:111,554,752...111,557,411 JBrowse link
G AABR07055527.1 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 Ensembl chr 7:4,352,572...4,353,409 JBrowse link
G Ercc2 ERCC excision repair 2, TFIIH core complex helicase subunit acts_upstream_of_or_within ISO MGI:2183949 (MGI:5496981|PMID:23562818) RGD PMID:23562818 MGI:5496981 NCBI chr 1:79,033,342...79,047,102
Ensembl chr 1:79,033,326...79,047,102
JBrowse link
G LOC100362830 ribosomal protein S7-like involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 5:162,360,919...162,361,581
Ensembl chr 5:162,360,907...162,361,603
JBrowse link
G Ltv1 LTV1 ribosome biogenesis factor involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 1:7,565,673...7,578,398
Ensembl chr 1:7,565,669...7,578,563
JBrowse link
G Mettl17 methyltransferase like 17 involved_in ISO (MGI:6436379|PMID:31487196) RGD PMID:31487196 MGI:6436379 NCBI chr15:24,582,296...24,589,029
Ensembl chr15:24,582,406...24,589,026
JBrowse link
G Nom1 nucleolar protein with MIF4G domain 1 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 4:5,891,220...5,910,741
Ensembl chr 4:5,892,909...5,909,709
JBrowse link
G Npm1 nucleophosmin 1 involved_in
acts_upstream_of_or_within
IBA
ISO
PMID:21873635
(MGI:3822232|PMID:18809582)
RGD PMID:18809582 PMID:21873635 MGI:3822232, RGD:13792537 NCBI chr10:17,741,512...17,751,626
Ensembl chr10:17,739,941...17,751,645
JBrowse link
G Riok1 RIO kinase 1 involved_in ISO (PMID:22072790) RGD PMID:22072790 NCBI chr17:26,767,440...26,789,900
Ensembl chr17:26,766,947...26,789,900
JBrowse link
G Riok2 RIO kinase 2 involved_in ISO (PMID:19564402) RGD PMID:19564402 NCBI chr 1:58,103,132...58,119,397
Ensembl chr 1:58,103,084...58,120,512
JBrowse link
G Rps15 ribosomal protein S15 involved_in ISO (PMID:18697920) RGD PMID:18697920 NCBI chr 7:9,416,003...9,417,442
Ensembl chr 7:9,416,004...9,417,450
JBrowse link
G Rps16 ribosomal protein S16 involved_in ISO (PMID:18697920) RGD PMID:18697920 NCBI chr 1:83,643,066...83,646,056
Ensembl chr 1:83,643,130...83,646,206
JBrowse link
G Rps17 ribosomal protein S17 involved_in ISO (PMID:18697920) RGD PMID:18697920 NCBI chr 1:135,295,920...135,298,506
Ensembl chr 1:135,295,919...135,298,535
JBrowse link
G Rps19 ribosomal protein S19 involved_in ISO (PMID:18697920) RGD PMID:18697920 NCBI chr 1:80,480,718...80,486,511
Ensembl chr 1:80,480,951...80,486,508
JBrowse link
G Rps24 ribosomal protein S24 involved_in ISO (PMID:18230666), (PMID:18697920) RGD PMID:18230666 PMID:18697920 NCBI chr16:89,538...94,267
Ensembl chr16:89,604...94,279
JBrowse link
G Rps25 ribosomal protein s25 involved_in ISO (PMID:18697920) RGD PMID:18697920 NCBI chr 8:44,733,623...44,735,999
Ensembl chr 8:44,733,029...44,737,271
JBrowse link
G Rps28 ribosomal protein S28 involved_in ISO (PMID:18697920) RGD PMID:18697920 NCBI chr 7:14,607,801...14,609,170
Ensembl chr 7:14,607,801...14,609,170
JBrowse link
G Rps6 ribosomal protein S6 involved_in
acts_upstream_of_or_within
ISO (PMID:18697920)
MGI:2176073|MGI:2387471 (MGI:1859684|PMID:10856218)
RGD PMID:10856218 PMID:18697920 MGI:1859684 NCBI chr 5:101,371,716...101,374,576
Ensembl chr 5:101,371,136...101,374,602
Ensembl chr 5:101,371,136...101,374,602
JBrowse link
G Rps7 ribosomal protein S7 involved_in ISO
IBA
(PMID:18697920)
PMID:21873635
RGD PMID:18697920 PMID:21873635 RGD:13792537 NCBI chr 6:45,266,200...45,271,064
Ensembl chr 6:45,223,980...45,271,145
JBrowse link
G Rrp36 ribosomal RNA processing 36 involved_in ISO (PMID:20038530) RGD PMID:20038530 NCBI chr 9:14,308,810...14,316,959
Ensembl chr 9:14,308,982...14,316,110
JBrowse link
ribosomal small subunit export from nucleus term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AABR07007744.2 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 Ensembl chr 2:27,601,232...27,601,825 JBrowse link
G AABR07025089.1 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 Ensembl chr16:26,091,905...26,186,434 JBrowse link
G AABR07041089.1 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 Ensembl chr  X:111,554,752...111,557,411 JBrowse link
G AABR07055527.1 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 Ensembl chr 7:4,352,572...4,353,409 JBrowse link
G Ltv1 LTV1 ribosome biogenesis factor involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 1:7,565,673...7,578,398
Ensembl chr 1:7,565,669...7,578,563
JBrowse link
G Nop9 NOP9 nucleolar protein involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr15:29,243,853...29,252,220
Ensembl chr15:29,243,862...29,252,220
JBrowse link
G Npm1 nucleophosmin 1 involved_in
acts_upstream_of_or_within
IBA
ISO
PMID:21873635
(MGI:3822232|PMID:18809582)
RGD PMID:18809582 PMID:21873635 MGI:3822232, RGD:13792537 NCBI chr10:17,741,512...17,751,626
Ensembl chr10:17,739,941...17,751,645
JBrowse link
G Nup88 nucleoporin 88 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr10:55,667,903...55,692,249
Ensembl chr10:55,667,906...55,692,257
JBrowse link
G Ran RAN, member RAS oncogene family involved_in ISO (PMID:12773398) RGD PMID:12773398 NCBI chr12:27,674,049...27,678,598
Ensembl chr12:27,674,050...27,678,276
JBrowse link
G Rps15 ribosomal protein S15 involved_in ISO (PMID:16037817) RGD PMID:16037817 NCBI chr 7:9,416,003...9,417,442
Ensembl chr 7:9,416,004...9,417,450
JBrowse link
G Xpo1 exportin 1 involved_in IBA
ISO
PMID:21873635
(PMID:12773398)
RGD PMID:12773398 PMID:21873635 RGD:13792537 NCBI chr14:97,233,263...97,275,536
Ensembl chr14:97,233,270...97,275,498
JBrowse link
ribosomal subunit export from nucleus term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Abce1 ATP binding cassette subfamily E member 1 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr19:28,205,566...28,230,489
Ensembl chr19:28,205,555...28,230,489
JBrowse link
G Eif6 eukaryotic translation initiation factor 6 involved_in IBA
IEA
PMID:21873635
GO_REF:0000104
UniProt PMID:21873635 GO_REF:0000104, RGD:13792537 NCBI chr 3:144,325,038...144,331,396
Ensembl chr 3:144,325,036...144,331,401
JBrowse link
G Lsg1 large 60S subunit nuclear export GTPase 1 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr11:70,132,919...70,168,526
Ensembl chr11:70,143,847...70,168,518
JBrowse link
G Ran RAN, member RAS oncogene family involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr12:27,674,049...27,678,598
Ensembl chr12:27,674,050...27,678,276
JBrowse link
G Rasl2-9 RAS-like, family 2, locus 9 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 1:68,720,879...68,734,930
Ensembl chr 1:68,720,879...68,722,057
JBrowse link
G RGD1306195 similar to RAN protein involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 5:54,456,005...54,457,381
Ensembl chr 5:54,455,893...54,457,677
JBrowse link
G Xpo1 exportin 1 involved_in ISO (PMID:12724356) RGD PMID:12724356 NCBI chr14:97,233,263...97,275,536
Ensembl chr14:97,233,270...97,275,498
JBrowse link
ribosome assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dhx29 DExH-box helicase 29 involved_in ISO (PMID:20018725) RGD PMID:20018725 NCBI chr 2:44,560,653...44,611,450
Ensembl chr 2:44,560,714...44,611,445
JBrowse link
G Dhx37 DEAH-box helicase 37 involved_in ISO (PMID:30582406) RGD PMID:30582406 NCBI chr12:31,194,782...31,214,890
Ensembl chr12:31,194,859...31,216,802
JBrowse link
G Eif2a eukaryotic translation initiation factor 2A involved_in ISO (PMID:12133843) RGD PMID:12133843 NCBI chr 2:142,761,303...142,794,767
Ensembl chr 2:142,761,416...142,795,068
JBrowse link
G Mrpl22 mitochondrial ribosomal protein L22 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr10:42,345,446...42,355,779
Ensembl chr10:42,342,776...42,355,779
JBrowse link
G Mterf4 mitochondrial transcription termination factor 4 acts_upstream_of_or_within ISO MGI:2182095|MGI:5288505 (MGI:5287350|PMID:21531335) RGD PMID:21531335 MGI:5287350 NCBI chr 9:93,834,162...93,838,838
Ensembl chr 9:93,834,144...93,838,864
JBrowse link
G Nip7 nucleolar pre-rRNA processing protein NIP7 involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr19:34,962,557...34,964,700
Ensembl chr19:34,962,557...34,964,711
JBrowse link
rRNA (guanine-N7)-methylation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bud23 BUD23, rRNA methyltransferase and ribosome maturation factor involved_in ISO
IBA
(PMID:25851604)
PMID:21873635
RGD PMID:25851604 PMID:21873635 RGD:13792537 NCBI chr12:21,629,551...21,640,758
Ensembl chr12:21,629,536...21,640,751
JBrowse link
G Trmt112 tRNA methyltransferase activator subunit 11-2 involved_in ISO (PMID:25851604) RGD PMID:25851604 NCBI chr 1:204,103,298...204,104,151 JBrowse link
rRNA 2'-O-methylation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Mrm1 mitochondrial rRNA methyltransferase 1 involved_in IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr10:69,690,406...69,697,326
Ensembl chr10:69,690,421...69,696,709
JBrowse link
G Mrm3 mitochondrial rRNA methyltransferase 3 involved_in IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr10:61,095,920...61,125,421
Ensembl chr10:61,095,952...61,102,630
JBrowse link
rRNA 3'-end processing term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Eri1 exoribonuclease 1 involved_in ISS
ISO
GO_REF:0000024
(MGI:3838267|PMID:18438418)
UniProt
RGD
PMID:18438418 GO_REF:0000024 MGI:3838267 NCBI chr16:56,724,101...56,744,228
Ensembl chr16:56,724,115...56,744,226
JBrowse link
rRNA acetylation involved in maturation of SSU-rRNA term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Nat10 N-acetyltransferase 10 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 3:90,111,643...90,151,644
Ensembl chr 3:90,111,645...90,149,927
JBrowse link
rRNA base methylation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Emg1 EMG1 N1-specific pseudouridine methyltransferase involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 4:157,509,258...157,517,540
Ensembl chr 4:157,509,277...157,517,540
JBrowse link
G Fdxacb1 ferredoxin-fold anticodon binding domain containing 1 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 8:51,111,831...51,118,253
Ensembl chr 8:51,113,397...51,118,308
JBrowse link
G Mettl15 methyltransferase like 15 involved_in ISO
IBA
(PMID:31665743), (PMID:32371392)
PMID:21873635
RGD PMID:31665743 PMID:32371392 PMID:21873635 RGD:13792537 NCBI chr 3:95,586,855...95,764,392
Ensembl chr 3:95,586,850...95,764,397
JBrowse link
G Mettl16 methyltransferase like 16 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr10:59,640,915...59,697,291
Ensembl chr10:59,640,972...59,687,061
JBrowse link
G Nop2 NOP2 nucleolar protein involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 4:157,932,731...157,944,462
Ensembl chr 4:157,932,716...157,944,459
JBrowse link
G Nsun5 NOP2/Sun RNA methyltransferase 5 involved_in ISO
IBA
(PMID:31428936), (PMID:31722427)
PMID:21873635
(MGI:6414744|PMID:31722427)
RGD PMID:31428936 PMID:31722427 PMID:21873635 MGI:6414744, RGD:13792537 NCBI chr12:21,293,637...21,299,319
Ensembl chr12:21,293,645...21,299,272
JBrowse link
rRNA export from nucleus term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AABR07007744.2 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 Ensembl chr 2:27,601,232...27,601,825 JBrowse link
G AABR07025089.1 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 Ensembl chr16:26,091,905...26,186,434 JBrowse link
G AABR07041089.1 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 Ensembl chr  X:111,554,752...111,557,411 JBrowse link
G AABR07055527.1 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 Ensembl chr 7:4,352,572...4,353,409 JBrowse link
G Npm1 nucleophosmin 1 involved_in
acts_upstream_of_or_within
IBA
ISO
PMID:21873635
(MGI:3822232|PMID:18809582)
RGD PMID:18809582 PMID:21873635 MGI:3822232, RGD:13792537 NCBI chr10:17,741,512...17,751,626
Ensembl chr10:17,739,941...17,751,645
JBrowse link
G Tsc1 TSC complex subunit 1 involved_in ISO (PMID:17308101) RGD PMID:17308101 NCBI chr 3:11,969,547...12,018,591
Ensembl chr 3:11,979,729...12,015,674
JBrowse link
rRNA methylation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dimt1 DIM1 rRNA methyltransferase and ribosome maturation factor involved_in ISO
IBA
(PMID:25851604)
PMID:21873635
RGD PMID:25851604 PMID:21873635 RGD:13792537 NCBI chr 2:38,343,086...38,366,760
Ensembl chr 2:38,354,854...38,368,227
JBrowse link
G Fbl fibrillarin involved_in ISO
ISS
IBA
(PMID:30540930)
GO_REF:0000024
PMID:21873635
RGD
UniProt
PMID:30540930 PMID:21873635 GO_REF:0000024, RGD:13792537 NCBI chr 1:83,469,832...83,478,932
Ensembl chr 1:83,469,832...83,478,932
JBrowse link
G Fbll1 fibrillarin-like 1 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr10:20,258,656...20,260,299
Ensembl chr10:20,258,656...20,260,299
JBrowse link
G Ftsj3 FtsJ RNA 2'-O-methyltransferase 3 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr10:91,180,945...91,187,389
Ensembl chr10:91,180,696...91,187,397
JBrowse link
G Mettl5 methyltransferase like 5 involved_in ISO
IBA
(PMID:31328227), (PMID:32217665), (PMID:33357433), (PMID:33428944)
(MGI:6505165|PMID:32783360), (MGI:6884948|PMID:35033535)
(PMID:31328227), (PMID:32217665), (PMID:33357433), (PMID:33428944), (PMID:35033535)
PMID:21873635
RGD PMID:31328227 PMID:32217665 PMID:32783360 PMID:33357433 PMID:33428944 More... MGI:6505165 MGI:6884948, RGD:13792537 NCBI chr 3:54,625,790...54,638,066
Ensembl chr 3:54,625,793...54,638,039
JBrowse link
G Mrm2 mitochondrial rRNA methyltransferase 2 involved_in IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr12:14,309,556...14,314,759
Ensembl chr12:14,251,941...14,314,118
JBrowse link
G Nsun4 NOP2/Sun RNA methyltransferase 4 involved_in IBA
ISO
PMID:21873635
(MGI:5573024|PMID:24516400)
(PMID:23022348)
RGD PMID:23022348 PMID:24516400 PMID:21873635 MGI:5573024, RGD:13792537 NCBI chr 5:129,511,224...129,532,498
Ensembl chr 5:129,512,307...129,532,423
JBrowse link
G Tfb1m transcription factor B1, mitochondrial involved_in IBA
IEA
PMID:21873635
GO_REF:0000104
UniProt PMID:21873635 GO_REF:0000104, RGD:13792537 NCBI chr 1:44,115,240...44,161,737
Ensembl chr 1:44,119,166...44,161,709
JBrowse link
G Tfb2m transcription factor B2, mitochondrial involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr13:91,278,889...91,296,709
Ensembl chr13:91,278,898...91,296,657
JBrowse link
G Trmt112 tRNA methyltransferase activator subunit 11-2 involved_in ISO (PMID:31328227)
(PMID:31328227), (PMID:35033535)
RGD PMID:31328227 PMID:35033535 NCBI chr 1:204,103,298...204,104,151 JBrowse link
G Trmt2b tRNA methyltransferase 2 homolog B acts_upstream_of_or_within ISO (MGI:6714531|PMID:31736397) RGD PMID:31736397 MGI:6714531 NCBI chr  X:97,425,712...97,483,821 JBrowse link
G Zcchc4 zinc finger CCHC-type containing 4 involved_in IEA
ISS
ISO
IBA
GO_REF:0000002
GO_REF:0000024
(PMID:30531910), (PMID:31328227), (PMID:31695039), (PMID:31799605)
PMID:21873635
InterPro
UniProt
RGD
PMID:30531910 PMID:31328227 PMID:31695039 PMID:31799605 PMID:21873635 GO_REF:0000002 GO_REF:0000024, RGD:13792537 NCBI chr14:58,165,459...58,207,071
Ensembl chr14:58,165,460...58,206,743
JBrowse link
rRNA modification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Mrm1 mitochondrial rRNA methyltransferase 1 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr10:69,690,406...69,697,326
Ensembl chr10:69,690,421...69,696,709
JBrowse link
rRNA processing term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bop1 BOP1 ribosomal biogenesis factor acts_upstream_of_or_within ISO MGI:1890613 (MGI:1860667|PMID:10891491), (MGI:3045996|PMID:15225545) RGD PMID:10891491 PMID:15225545 MGI:1860667 MGI:3045996 NCBI chr 7:108,172,062...108,195,875
Ensembl chr 7:108,172,066...108,195,931
JBrowse link
G Brix1 biogenesis of ribosomes BRX1 involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 2:59,450,608...59,461,486
Ensembl chr 2:59,450,614...59,461,495
JBrowse link
G Bysl bystin-like involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 9:13,382,806...13,392,557
Ensembl chr 9:13,382,557...13,394,339
JBrowse link
G Cdkn2a cyclin-dependent kinase inhibitor 2A involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 5:103,984,949...103,992,143
Ensembl chr 5:103,984,949...104,003,149
JBrowse link
G Ddx10 DEAD-box helicase 10 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 8:53,488,656...53,643,373
Ensembl chr 8:53,488,656...53,643,373
JBrowse link
G Ddx21 DExD-box helicase 21 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr20:30,534,319...30,554,513
Ensembl chr20:30,534,319...30,554,543
JBrowse link
G Ddx27 DEAD-box helicase 27 involved_in ISO (PMID:25825154) RGD PMID:25825154 NCBI chr 3:155,744,182...155,763,380
Ensembl chr 3:155,744,150...155,763,372
JBrowse link
G Ddx47 DEAD-box helicase 47 involved_in ISO
IBA
(PMID:16963496)
PMID:21873635
RGD PMID:16963496 PMID:21873635 RGD:13792537 NCBI chr 4:167,845,652...167,858,115
Ensembl chr 4:167,845,640...167,859,115
JBrowse link
G Ddx49 DEAD-box helicase 49 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr16:19,125,388...19,133,042
Ensembl chr16:19,125,384...19,133,616
JBrowse link
G Ddx52 DExD-box helicase 52 TAS RGD PMID:9154839 RGD:704356 NCBI chr10:68,824,594...68,847,400
Ensembl chr10:68,824,645...68,848,266
JBrowse link
G Ddx54 DEAD-box helicase 54 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr12:35,934,713...35,949,956
Ensembl chr12:35,934,716...35,972,523
JBrowse link
G Drosha drosha ribonuclease III involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 2:61,864,886...61,976,688
Ensembl chr 2:61,864,970...61,976,688
JBrowse link
G Ebna1bp2 EBNA1 binding protein 2 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 5:132,148,164...132,152,730
Ensembl chr 5:132,148,143...132,153,267
JBrowse link
G Eif4a3 eukaryotic translation initiation factor 4A3 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr10:104,549,038...104,559,032
Ensembl chr10:104,549,038...104,559,057
JBrowse link
G Esf1 ESF1 nucleolar pre-rRNA processing protein homolog involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 3:127,454,744...127,507,941
Ensembl chr 3:127,454,811...127,507,817
JBrowse link
G Exosc3 exosome component 3 involved_in ISO (PMID:11110791) RGD PMID:11110791 NCBI chr 5:59,573,849...59,579,065
Ensembl chr 5:59,573,886...59,579,060
JBrowse link
G Gemin4 gem (nuclear organelle) associated protein 4 involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr10:61,062,420...61,073,529
Ensembl chr10:61,066,425...61,073,431
Ensembl chr10:61,066,425...61,073,431
JBrowse link
G Helq helicase, POLQ-like involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr14:8,818,582...8,862,926
Ensembl chr14:8,818,592...8,862,960
JBrowse link
G Imp3 IMP U3 small nucleolar ribonucleoprotein 3 acts_upstream_of_or_within ISO UniProtKB:P32899 (MGI:2655032|PMID:12655004) RGD PMID:12655004 MGI:2655032 NCBI chr 8:57,339,528...57,340,416
Ensembl chr 8:57,339,496...57,340,414
JBrowse link
G Imp4 IMP U3 small nucleolar ribonucleoprotein 4 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 9:36,654,127...36,659,265
Ensembl chr 9:36,654,401...36,660,075
JBrowse link
G Krr1 KRR1, small subunit processome component homolog involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 7:47,475,557...47,486,996
Ensembl chr 7:47,475,557...47,486,985
JBrowse link
G LOC100362830 ribosomal protein S7-like involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 5:162,360,919...162,361,581
Ensembl chr 5:162,360,907...162,361,603
JBrowse link
G Lyar Ly1 antibody reactive involved_in ISO
ISS
IEA
IBA
(PMID:24495227)
GO_REF:0000024
GO_REF:0000107
PMID:21873635
RGD
UniProt
Ensembl
PMID:24495227 PMID:21873635 GO_REF:0000024 GO_REF:0000107, RGD:13792537 NCBI chr14:72,576,878...72,590,854
Ensembl chr14:72,576,879...72,590,612
JBrowse link
G Mdn1 midasin AAA ATPase 1 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 5:47,055,435...47,190,426
Ensembl chr 5:47,055,447...47,186,332
JBrowse link
G Mphosph10 M-phase phosphoprotein 10 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 1:117,948,134...117,964,149
Ensembl chr 1:117,948,134...117,964,149
JBrowse link
G Mrpl44 mitochondrial ribosomal protein L44 involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 9:81,106,658...81,111,709
Ensembl chr 9:81,106,655...81,112,812
JBrowse link
G Mrto4 mRNA turnover 4, ribosome maturation factor involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 5:151,601,780...151,608,549
Ensembl chr 5:151,601,780...151,608,287
JBrowse link
G Mterf4 mitochondrial transcription termination factor 4 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 9:93,834,162...93,838,838
Ensembl chr 9:93,834,144...93,838,864
JBrowse link
G Mtrex Mtr4 exosome RNA helicase involved_in ISO (PMID:29107693) RGD PMID:29107693 NCBI chr 2:44,500,326...44,560,624
Ensembl chr 2:44,461,444...44,560,627
JBrowse link
G Naf1 nuclear assembly factor 1 ribonucleoprotein involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr16:22,837,586...22,868,293
Ensembl chr16:22,837,588...22,868,293
JBrowse link
G Nol6 nucleolar protein 6 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 5:56,259,919...56,270,540
Ensembl chr 5:56,260,830...56,270,336
JBrowse link
G Nol8 nucleolar protein 8 involved_in ISO (PMID:16963496) RGD PMID:16963496 NCBI chr17:14,990,394...15,013,784
Ensembl chr17:14,990,417...15,013,848
JBrowse link
G Nop53 NOP53 ribosome biogenesis factor involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 1:76,629,084...76,636,902
Ensembl chr 1:76,629,069...76,636,902
JBrowse link
G Npm3 nucleophosmin/nucleoplasmin, 3 acts_upstream_of_or_within ISO (MGI:3573985|PMID:15596447) RGD PMID:15596447 MGI:3573985 NCBI chr 1:244,595,638...244,597,623
Ensembl chr 1:244,595,644...244,597,591
JBrowse link
G Nsa2 NSA2 ribosome biogenesis factor involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 2:28,443,142...28,449,393
Ensembl chr 2:28,441,269...28,449,388
JBrowse link
G Nvl nuclear VCP-like involved_in ISO (PMID:29107693) RGD PMID:29107693 NCBI chr13:92,851,023...92,906,749
Ensembl chr13:92,853,650...92,906,049
JBrowse link
G Pa2g4 proliferation-associated 2G4 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 7:984,795...992,264
Ensembl chr 7:983,971...992,331
JBrowse link
G Pdcd11 programmed cell death 11 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 1:245,980,840...246,021,999
Ensembl chr 1:245,980,880...246,021,999
JBrowse link
G Pelp1 proline, glutamate and leucine rich protein 1 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr10:55,094,798...55,111,833
Ensembl chr10:55,094,796...55,111,994
JBrowse link
G Pes1 pescadillo ribosomal biogenesis factor 1 acts_upstream_of_or_within ISO MGI:1334460 (MGI:3045996|PMID:15225545)
(PMID:16738141)
RGD PMID:15225545 PMID:16738141 MGI:3045996 NCBI chr14:78,850,754...78,867,134
Ensembl chr14:78,850,709...78,867,134
JBrowse link
G Pih1d1 PIH1 domain containing 1 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 1:95,639,597...95,645,295
Ensembl chr 1:95,639,592...95,645,290
JBrowse link
G Pih1d2 PIH1 domain containing 2 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 8:50,966,885...50,976,901
Ensembl chr 8:50,966,885...50,975,656
JBrowse link
G Pin4 peptidylprolyl cis/trans isomerase, NIMA-interacting 4 involved_in ISO
IBA
(PMID:19369196)
PMID:21873635
RGD PMID:19369196 PMID:21873635 RGD:13792537 NCBI chr  X:67,232,006...67,238,707
Ensembl chr  X:67,232,081...67,238,702
JBrowse link
G Pop4 POP4 homolog, ribonuclease P/MRP subunit involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 1:90,960,026...90,968,360
Ensembl chr 1:90,960,022...90,968,443
JBrowse link
G Pop5 POP5 homolog, ribonuclease P/MRP subunit involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr12:41,376,755...41,384,882
Ensembl chr12:41,376,755...41,381,336
JBrowse link
G Pop7 POP7 homolog, ribonuclease P/MRP subunit involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr12:19,189,384...19,190,425
Ensembl chr12:19,189,138...19,190,674
JBrowse link
G Ppan peter pan homolog involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 8:19,423,908...19,427,941
Ensembl chr 8:19,423,961...19,427,938
JBrowse link
G Pwp1 PWP1 homolog, endonuclein involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 7:17,982,730...17,998,728
Ensembl chr 7:17,982,235...17,998,731
JBrowse link
G Rbfa ribosome binding factor A involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr18:73,639,260...73,648,942
Ensembl chr18:73,639,260...73,648,915
JBrowse link
G Rnasel ribonuclease L IDA RGD PMID:8469023 RGD:2291995 NCBI chr13:65,894,990...65,910,354
Ensembl chr13:65,901,459...65,908,704
JBrowse link
G Rpf1 ribosome production factor 1 involved_in IBA
IEA
PMID:21873635
GO_REF:0000043
UniProt PMID:21873635 GO_REF:0000043, RGD:13792537 NCBI chr 2:235,403,020...235,417,546
Ensembl chr 2:235,403,021...235,417,807
JBrowse link
G Rpl11 ribosomal protein L11 involved_in ISO (PMID:18697920) RGD PMID:18697920 NCBI chr 5:148,274,060...148,277,708
Ensembl chr 5:148,274,069...148,277,599
JBrowse link
G Rpl14 ribosomal protein L14 involved_in ISO (PMID:18697920) RGD PMID:18697920 NCBI chr 8:120,286,035...120,288,912
Ensembl chr 8:120,284,645...120,289,064
JBrowse link
G Rpl26 ribosomal protein L26 involved_in ISO
IEA
(PMID:18697920)
GO_REF:0000107
RGD
Ensembl
PMID:18697920 GO_REF:0000107 NCBI chr10:53,610,836...53,613,966
Ensembl chr10:53,610,421...53,613,966
JBrowse link
G Rpl27 ribosomal protein L27 involved_in ISO
ISS
(PMID:25424902)
GO_REF:0000024
RGD
UniProt
PMID:25424902 GO_REF:0000024 NCBI chr10:86,375,511...86,379,210
Ensembl chr10:86,375,454...86,379,193
JBrowse link
G Rpl35a ribosomal protein L35A involved_in ISO (PMID:18697920) RGD PMID:18697920 NCBI chr11:67,726,034...67,730,023
Ensembl chr11:67,726,032...67,729,942
JBrowse link
G Rpl5 ribosomal protein L5 involved_in ISO (PMID:18697920) RGD PMID:18697920 NCBI chr14:1,843,856...1,850,301
Ensembl chr14:1,843,770...1,850,290
JBrowse link
G Rpl7 ribosomal protein L7 involved_in ISO (PMID:18697920) RGD PMID:18697920 NCBI chr 5:3,217,184...3,220,192 JBrowse link
G Rpp25 ribonuclease P and MRP subunit p25 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 8:57,907,352...57,908,732
Ensembl chr 8:57,907,352...57,908,732
JBrowse link
G Rps15 ribosomal protein S15 involved_in ISO (PMID:18697920) RGD PMID:18697920 NCBI chr 7:9,416,003...9,417,442
Ensembl chr 7:9,416,004...9,417,450
JBrowse link
G Rps16 ribosomal protein S16 involved_in ISO (PMID:18697920) RGD PMID:18697920 NCBI chr 1:83,643,066...83,646,056
Ensembl chr 1:83,643,130...83,646,206
JBrowse link
G Rps17 ribosomal protein S17 involved_in ISO (PMID:18697920) RGD PMID:18697920 NCBI chr 1:135,295,920...135,298,506
Ensembl chr 1:135,295,919...135,298,535
JBrowse link
G Rps19 ribosomal protein S19 involved_in ISO (PMID:18697920) RGD PMID:18697920 NCBI chr 1:80,480,718...80,486,511
Ensembl chr 1:80,480,951...80,486,508
JBrowse link
G Rps24 ribosomal protein S24 involved_in ISO (PMID:18230666), (PMID:18697920) RGD PMID:18230666 PMID:18697920 NCBI chr16:89,538...94,267
Ensembl chr16:89,604...94,279
JBrowse link
G Rps25 ribosomal protein s25 involved_in ISO (PMID:18697920) RGD PMID:18697920 NCBI chr 8:44,733,623...44,735,999
Ensembl chr 8:44,733,029...44,737,271
JBrowse link
G Rps27 ribosomal protein S27 involved_in ISO
ISS
(PMID:25424902)
GO_REF:0000024
RGD
UniProt
PMID:25424902 GO_REF:0000024 NCBI chr 2:175,665,858...175,666,963
Ensembl chr 2:175,665,853...175,666,964
JBrowse link
G Rps28 ribosomal protein S28 involved_in ISO (PMID:18697920) RGD PMID:18697920 NCBI chr 7:14,607,801...14,609,170
Ensembl chr 7:14,607,801...14,609,170
JBrowse link
G Rps6 ribosomal protein S6 involved_in
acts_upstream_of_or_within
ISO (PMID:18697920)
MGI:2387471 (MGI:3610868|PMID:16357222), (MGI:3696931|PMID:17000767)
RGD PMID:16357222 PMID:17000767 PMID:18697920 MGI:3610868 MGI:3696931 NCBI chr 5:101,371,716...101,374,576
Ensembl chr 5:101,371,136...101,374,602
Ensembl chr 5:101,371,136...101,374,602
JBrowse link
G Rps7 ribosomal protein S7 involved_in ISO
IBA
(PMID:18697920)
PMID:21873635
RGD PMID:18697920 PMID:21873635 RGD:13792537 NCBI chr 6:45,266,200...45,271,064
Ensembl chr 6:45,223,980...45,271,145
JBrowse link
G Rrp1 ribosomal RNA processing 1 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr20:10,260,892...10,272,141
Ensembl chr20:10,260,870...10,272,144
JBrowse link
G Rrp12 ribosomal RNA processing 12 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 1:240,672,378...240,706,499
Ensembl chr 1:240,672,382...240,706,018
JBrowse link
G Rrp1b ribosomal RNA processing 1B involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr20:10,123,111...10,148,704
Ensembl chr20:10,123,125...10,147,928
JBrowse link
G Rrp36 ribosomal RNA processing 36 involved_in ISO (PMID:20038530) RGD PMID:20038530 NCBI chr 9:14,308,810...14,316,959
Ensembl chr 9:14,308,982...14,316,110
JBrowse link
G Rrp7a ribosomal RNA processing 7 homolog A involved_in IBA
ISO
PMID:21873635
(PMID:33199730)
RGD PMID:33199730 PMID:21873635 RGD:13792537 NCBI chr 7:114,262,929...114,272,817
Ensembl chr 7:114,256,472...114,272,817
JBrowse link
G Rrp8 ribosomal RNA processing 8 involved_in IEA GO_REF:0000043
GO_REF:0000104
UniProt GO_REF:0000043 GO_REF:0000104 NCBI chr 1:160,081,092...160,088,709
Ensembl chr 1:160,084,295...160,089,331
JBrowse link
G Rrp9 ribosomal RNA processing 9, U3 small nucleolar RNA binding protein involved_in ISO (PMID:26867678) RGD PMID:26867678 NCBI chr 8:107,116,411...107,126,123
Ensembl chr 8:107,117,471...107,126,123
JBrowse link
G Sbds Sbds, ribosome maturation factor involved_in ISO (PMID:17643419) RGD PMID:17643419 NCBI chr12:26,420,410...26,429,650
Ensembl chr12:26,420,414...26,429,649
JBrowse link
G Utp11 UTP11, small subunit processome component involved_in IEA GO_REF:0000104
GO_REF:0000043
UniProt GO_REF:0000043 GO_REF:0000104 NCBI chr 5:136,931,279...136,946,164
Ensembl chr 5:136,931,008...136,946,191
JBrowse link
G Utp14a UTP14A small subunit processome component involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr  X:127,439,282...127,464,634
Ensembl chr  X:127,439,268...127,464,633
JBrowse link
G Utp15 UTP15, small subunit processome component involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 2:29,594,405...29,612,819
Ensembl chr 2:29,594,941...29,612,773
JBrowse link
G Utp18 UTP18 small subunit processome component involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr10:78,811,879...78,839,338
Ensembl chr10:78,811,880...78,839,627
JBrowse link
G Utp20 UTP20 small subunit processome component involved_in ISO (PMID:17498821) RGD PMID:17498821 NCBI chr 7:23,134,630...23,215,639
Ensembl chr 7:23,134,637...23,215,632
JBrowse link
G Wbp11 WW domain binding protein 11 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 4:169,680,984...169,694,431
Ensembl chr 4:169,680,983...169,694,443
JBrowse link
G Wdr18 WD repeat domain 18 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 7:9,740,245...9,748,041
Ensembl chr 7:9,739,604...9,748,070
JBrowse link
G Wdr36 WD repeat domain 36 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr18:24,473,645...24,501,773
Ensembl chr18:24,473,663...24,508,092
JBrowse link
G Wdr55 WD repeat domain 55 involved_in ISS GO_REF:0000024 UniProt GO_REF:0000024 NCBI chr18:28,375,321...28,378,834 JBrowse link
G Wdr74 WD repeat domain 74 involved_in ISO (PMID:29107693) RGD PMID:29107693 NCBI chr 1:205,631,769...205,636,563
Ensembl chr 1:205,631,824...205,636,563
JBrowse link
G Ybey ybeY metalloendoribonuclease involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr20:12,165,192...12,174,713
Ensembl chr20:12,165,237...12,174,713
JBrowse link
rRNA pseudouridine synthesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dkc1 dyskerin pseudouridine synthase 1 acts_upstream_of_or_within
involved_in
ISO
IBA
MGI:2446500|MGI:3849598|MGI:3849599 (MGI:3047190|PMID:15240872), (MGI:5499053|PMID:23726835)
PMID:21873635
RGD PMID:15240872 PMID:23726835 PMID:21873635 MGI:3047190 MGI:5499053, RGD:13792537
G Nhp2 NHP2 ribonucleoprotein involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr10:35,877,015...35,880,409
Ensembl chr10:35,877,054...35,882,545
JBrowse link
G Nop10 NOP10 ribonucleoprotein involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 3:99,066,857...99,067,942
Ensembl chr 3:99,066,857...99,067,942
JBrowse link
small-subunit processome assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Abt1 activator of basal transcription 1 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr17:41,699,151...41,701,253
Ensembl chr17:41,699,147...41,701,259
JBrowse link
G Prkdc protein kinase, DNA-activated, catalytic subunit involved_in ISO (PMID:32103174) RGD PMID:32103174 NCBI chr11:85,040,790...85,258,357
Ensembl chr11:85,040,792...85,257,952
JBrowse link
G Xrcc5 X-ray repair cross complementing 5 involved_in ISO (PMID:32103174) RGD PMID:32103174 NCBI chr 9:73,955,220...74,044,020
Ensembl chr 9:73,955,216...74,044,018
JBrowse link
snoRNA guided rRNA pseudouridine synthesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dkc1 dyskerin pseudouridine synthase 1 IDA RGD PMID:12446766 RGD:633420
G Gar1 GAR1 ribonucleoprotein involved_in IDA
IBA
PMID:21873635 RGD
GO_Central
PMID:12446766 PMID:21873635 RGD:633420, RGD:13792537 NCBI chr 2:218,375,231...218,382,509
Ensembl chr 2:218,375,353...218,382,524
JBrowse link
G Nhp2 NHP2 ribonucleoprotein IDA RGD PMID:12446766 RGD:633420 NCBI chr10:35,877,015...35,880,409
Ensembl chr10:35,877,054...35,882,545
JBrowse link
G Nop10 NOP10 ribonucleoprotein IDA RGD PMID:12446766 RGD:633420 NCBI chr 3:99,066,857...99,067,942
Ensembl chr 3:99,066,857...99,067,942
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 18737
    cellular process 17432
      cellular component organization or biogenesis 6534
        cellular component biogenesis 3305
          ribonucleoprotein complex biogenesis 489
            ribosome biogenesis 351
              negative regulation of ribosome biogenesis + 4
              positive regulation of ribosome biogenesis 0
              rRNA export from nucleus 6
              rRNA processing + 236
              regulation of ribosome biogenesis + 7
              ribosomal large subunit biogenesis + 115
              ribosomal small subunit biogenesis + 103
              ribosomal subunit export from nucleus + 21
              ribosome assembly + 87
paths to the root