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ONTOLOGY REPORT - ANNOTATIONS


Term:establishment of planar polarity of embryonic epithelium
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Accession:GO:0042249 term browser browse the term
Definition:Coordinated organization of groups of cells in the plane of an embryonic epithelium, such that they all orient to similar coordinates.



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establishment of planar polarity of embryonic epithelium term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Celsr1 cadherin, EGF LAG seven-pass G-type receptor 1 acts_upstream_of_or_within ISO MGI:1862019|MGI:2668337 (MGI:2667273|PMID:12842012) RGD PMID:12842012 MGI:2667273 NCBI chr 7:116,987,616...117,125,035
Ensembl chr 7:116,987,605...117,125,164
JBrowse link
G Foxf2 forkhead box F2 acts_upstream_of_or_within ISO MGI:1347470|MGI:2667134 (MGI:3617131|PMID:16439479) RGD PMID:16439479 MGI:3617131 NCBI chr17:32,835,730...32,842,547
Ensembl chr17:32,836,777...32,842,176
JBrowse link
G Pafah1b1 platelet-activating factor acetylhydrolase 1b, regulatory subunit 1 involved_in ISO (MGI:5477842|PMID:23533177) RGD PMID:23533177 MGI:5477842 NCBI chr10:59,533,042...59,591,808
Ensembl chr10:59,534,117...59,591,808
JBrowse link
establishment of planar polarity involved in neural tube closure term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cthrc1 collagen triple helix repeat containing 1 acts_upstream_of_or_within
involved_in
ISO
IEA
MGI:1915838 (MGI:3814781|PMID:18606138)
GO_REF:0000107
RGD
Ensembl
PMID:18606138 GO_REF:0000107 MGI:3814781 NCBI chr 7:70,122,474...70,132,756
Ensembl chr 7:70,122,474...70,132,756
JBrowse link
G Vangl2 VANGL planar cell polarity protein 2 acts_upstream_of_or_within ISO MGI:1857642 (MGI:3814781|PMID:18606138) RGD PMID:18606138 MGI:3814781 NCBI chr13:84,462,731...84,489,404
Ensembl chr13:84,465,527...84,489,378
JBrowse link
negative regulation of planar cell polarity pathway involved in neural tube closure term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Lrp6 LDL receptor related protein 6 acts_upstream_of_or_within ISO MGI:98958 (MGI:4830282|PMID:19056682) RGD PMID:19056682 MGI:4830282 NCBI chr 4:167,269,856...167,400,364
Ensembl chr 4:167,270,353...167,400,497
JBrowse link
planar cell polarity pathway involved in neural tube closure term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Celsr1 cadherin, EGF LAG seven-pass G-type receptor 1 acts_upstream_of_or_within ISO MGI:1918711|MGI:2135272 (MGI:4830023|PMID:20704721) RGD PMID:20704721 MGI:4830023 NCBI chr 7:116,987,616...117,125,035
Ensembl chr 7:116,987,605...117,125,164
JBrowse link
G Dvl1 dishevelled segment polarity protein 1 acts_upstream_of_or_within
involved_in
ISO
IEA
IBA
MGI:106613 (MGI:3624185|PMID:16571627)
GO_REF:0000118
GO_REF:0000033
RGD
TreeGrafter
GO_Central
PMID:16571627 GO_REF:0000033 GO_REF:0000118 MGI:3624185 NCBI chr 5:166,456,989...166,468,733
Ensembl chr 5:166,456,686...166,468,664
JBrowse link
G Dvl2 dishevelled segment polarity protein 2 acts_upstream_of_or_within
involved_in
ISO
IBA
MGI:2135272|MGI:2429760|MGI:94941 (MGI:3624185|PMID:16571627)
GO_REF:0000033
RGD
GO_Central
PMID:16571627 GO_REF:0000033 MGI:3624185 NCBI chr10:54,723,356...54,732,823
Ensembl chr10:54,723,411...54,732,820
JBrowse link
G Dvl3 dishevelled segment polarity protein 3 acts_upstream_of_or_within
involved_in
ISO
IBA
MGI:2135272 (MGI:3821448|PMID:19008950)
GO_REF:0000033
RGD
GO_Central
PMID:19008950 GO_REF:0000033 MGI:3821448 NCBI chr11:80,365,446...80,382,641
Ensembl chr11:80,366,117...80,382,462
JBrowse link
G Fzd1 frizzled class receptor 1 acts_upstream_of_or_within
involved_in
ISO
IEA
MGI:1888513|MGI:2135272 (MGI:4837757|PMID:20940229)
GO_REF:0000107
RGD
Ensembl
PMID:20940229 GO_REF:0000107 MGI:4837757 NCBI chr 4:29,310,303...29,314,701
Ensembl chr 4:29,310,091...29,312,643
Ensembl chr 4:29,310,091...29,312,643
JBrowse link
G Fzd2 frizzled class receptor 2 involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:1196625|MGI:2135272 (MGI:4837757|PMID:20940229)
Ensembl
RGD
PMID:20940229 GO_REF:0000107 MGI:4837757 NCBI chr10:87,561,866...87,563,776
Ensembl chr10:87,561,326...87,565,334
JBrowse link
G Grhl3 grainyhead-like transcription factor 3 acts_upstream_of_or_within ISO MGI:2135272 (MGI:4819429|PMID:20643356) RGD PMID:20643356 MGI:4819429 NCBI chr 5:147,774,161...147,806,291
Ensembl chr 5:147,774,160...147,806,160
JBrowse link
G Ptk7 protein tyrosine kinase 7 acts_upstream_of_or_within ISO MGI:1100883|MGI:2135272 (MGI:4830023|PMID:20704721) RGD PMID:20704721 MGI:4830023 NCBI chr 9:14,352,155...14,418,473
Ensembl chr 9:14,351,202...14,418,494
JBrowse link
G Sfrp1 secreted frizzled-related protein 1 involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:108078|MGI:1860298|MGI:2135272 (MGI:3793375|PMID:18257070)
Ensembl
RGD
PMID:18257070 GO_REF:0000107 MGI:3793375 NCBI chr16:68,575,763...68,614,180
Ensembl chr16:68,575,763...68,614,286
JBrowse link
G Sfrp2 secreted frizzled-related protein 2 acts_upstream_of_or_within ISO MGI:1860298|MGI:2135272|MGI:892014 (MGI:3793375|PMID:18257070) RGD PMID:18257070 MGI:3793375 NCBI chr 2:169,089,517...169,097,064
Ensembl chr 2:169,089,517...169,097,063
JBrowse link
G Sfrp5 secreted frizzled-related protein 5 acts_upstream_of_or_within ISO MGI:108078|MGI:2135272|MGI:892014 (MGI:3793375|PMID:18257070) RGD PMID:18257070 MGI:3793375 NCBI chr 1:241,006,762...241,011,224
Ensembl chr 1:241,006,762...241,011,224
JBrowse link
G Vangl2 VANGL planar cell polarity protein 2 acts_upstream_of_or_within ISO MGI:106613|MGI:108078|MGI:108100|MGI:1100883|MGI:1196625|MGI:1857642|MGI:1860298|MGI:1888513|MGI:1918711|MGI:2655333|MGI:892014 (MGI:3624185|PMID:16571627), (MGI:3793375|PMID:18257070), (MGI:3821448|PMID:19008950), (MGI:4819429|PMID:20643356), (MGI:4830023|PMID:20704721), (MGI:4837757|PMID:20940229) RGD PMID:16571627 PMID:18257070 PMID:19008950 PMID:20643356 PMID:20704721 More... MGI:3624185 MGI:3793375 MGI:3821448 MGI:4819429 MGI:4830023 MGI:4837757 NCBI chr13:84,462,731...84,489,404
Ensembl chr13:84,465,527...84,489,378
JBrowse link
G Wnt5a Wnt family member 5A acts_upstream_of_or_within
involved_in
ISO
IEA
MGI:1857617 (MGI:4830282|PMID:19056682)
GO_REF:0000107
RGD
Ensembl
PMID:19056682 GO_REF:0000107 MGI:4830282 NCBI chr16:3,697,032...3,718,230
Ensembl chr16:3,697,032...3,718,234
JBrowse link
regulation of establishment of planar polarity involved in neural tube closure term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Sec24b SEC24 homolog B, COPII coat complex component acts_upstream_of_or_within ISO MGI:4440619|MGI:4440621 (MGI:4438817|PMID:19966784) RGD PMID:19966784 MGI:4438817 NCBI chr 2:218,562,670...218,632,753
Ensembl chr 2:218,562,676...218,632,699
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 20295
    developmental process 7050
      anatomical structure morphogenesis 3006
        establishment of tissue polarity 42
          establishment of planar polarity 41
            establishment of planar polarity of embryonic epithelium 18
              establishment of planar polarity involved in neural tube closure + 16
Path 2
Term Annotations click to browse term
  biological_process 20295
    developmental process 7050
      anatomical structure development 6558
        tissue development 2302
          tissue morphogenesis 719
            morphogenesis of an epithelium 597
              morphogenesis of a polarized epithelium 72
                establishment of planar polarity 41
                  establishment of planar polarity of embryonic epithelium 18
                    establishment of planar polarity involved in neural tube closure + 16
paths to the root