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ONTOLOGY REPORT - ANNOTATIONS


Term:cellular modified amino acid catabolic process
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Accession:GO:0042219 term browser browse the term
Definition:The chemical reactions and pathways resulting in the breakdown of compounds derived from amino acids, organic acids containing one or more amino substituents.
Synonyms:exact_synonym: amino acid derivative catabolic process;   cellular amino acid derivative breakdown;   cellular amino acid derivative catabolic process;   cellular amino acid derivative catabolism;   cellular amino acid derivative degradation;   cellular modified amino acid breakdown;   cellular modified amino acid catabolism;   cellular modified amino acid degradation;   modified amino acid catabolic process;   modified amino acid catabolism



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cellular modified amino acid catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ggact gamma-glutamylamine cyclotransferase involved_in ISS
IEA
ISO
GO_REF:0000024
GO_REF:0000104
(PMID:20110353)
UniProt
RGD
PMID:20110353 GO_REF:0000024 GO_REF:0000104 NCBI chr15:99,969,246...99,998,343
Ensembl chr15:99,968,282...99,993,455
JBrowse link
G Ggact-ps3 gamma-glutamylamine cyclotransferase, pseudogene 3 involved_in IEA GO_REF:0000104 UniProt GO_REF:0000104 NCBI chr 5:47,343,248...47,355,132
Ensembl chr 5:47,354,774...47,355,154
Ensembl chr 5:47,354,774...47,355,154
JBrowse link
10-formyltetrahydrofolate catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Aasdhppt aminoadipate-semialdehyde dehydrogenase-phosphopantetheinyl transferase acts_upstream_of_positive_effect
involved_in
ISO
IEA
(PMID:19933275), (PMID:21238436)
GO_REF:0000107
RGD
Ensembl
PMID:19933275 PMID:21238436 GO_REF:0000107 NCBI chr 8:1,453,226...1,463,990
Ensembl chr 8:1,452,282...1,463,966
JBrowse link
G Aldh1l1 aldehyde dehydrogenase 1 family, member L1 involved_in ISO
IEA
IMP
IDA
(PMID:19933275)
GO_REF:0000117
PMID:10585460
(MGI:6369507|PMID:31624291)
PMID:1848231
RGD
UniProt
PMID:19933275 PMID:31624291 PMID:10585460 PMID:1848231 GO_REF:0000117 MGI:6369507, RGD:150521656, RGD:632027 NCBI chr 4:123,059,989...123,106,471
Ensembl chr 4:123,060,008...123,106,465
JBrowse link
G Aldh1l2 aldehyde dehydrogenase 1 family, member L2 involved_in ISO (PMID:21238436)
(MGI:6489626|PMID:33168096)
RGD PMID:21238436 PMID:33168096 MGI:6489626 NCBI chr 7:20,254,246...20,305,793
Ensembl chr 7:20,254,233...20,305,776
JBrowse link
4-hydroxyproline catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Hoga1 4-hydroxy-2-oxoglutarate aldolase 1 involved_in ISO (PMID:21998747) RGD PMID:21998747 NCBI chr 1:240,856,991...240,884,243
Ensembl chr 1:240,857,126...240,884,568
JBrowse link
amino-acid betaine catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bhmt betaine-homocysteine S-methyltransferase involved_in IEA GO_REF:0000041 UniProt GO_REF:0000041 NCBI chr 2:24,859,871...24,879,449
Ensembl chr 2:24,859,873...24,879,742
JBrowse link
G Dmgdh dimethylglycine dehydrogenase involved_in IEA GO_REF:0000041 UniProt GO_REF:0000041 NCBI chr 2:24,912,600...24,987,533
Ensembl chr 2:24,912,578...24,987,528
JBrowse link
carnitine catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Acadl acyl-CoA dehydrogenase, long chain involved_in ISO (MGI:1321427|PMID:9861014) RGD PMID:9861014 MGI:1321427 NCBI chr 9:68,333,981...68,372,149
Ensembl chr 9:68,333,980...68,372,220
JBrowse link
folic acid catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Mthfs methenyltetrahydrofolate synthetase involved_in ISO (PMID:12764149) RGD PMID:12764149 NCBI chr 8:89,729,498...89,801,998
Ensembl chr 8:89,729,508...89,799,089
JBrowse link
G Pm20d2 peptidase M20 domain containing 2 NOT|involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 5:47,566,059...47,586,334
Ensembl chr 5:47,566,072...47,586,212
JBrowse link
glutathione catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Chac1 ChaC glutathione-specific gamma-glutamylcyclotransferase 1 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 3:106,342,302...106,345,526
Ensembl chr 3:106,342,302...106,345,526
JBrowse link
G Chac2 ChaC glutathione specific gamma-glutamylcyclotransferase 2 involved_in IEA
IBA
GO_REF:0000104
GO_REF:0000033
UniProt
GO_Central
GO_REF:0000033 GO_REF:0000104 NCBI chr14:104,720,754...104,728,305
Ensembl chr14:104,720,758...104,728,301
JBrowse link
G Dpep1 dipeptidase 1 involved_in ISS
ISO
GO_REF:0000024
(MGI:1203838|PMID:9560193)
UniProt
RGD
PMID:9560193 GO_REF:0000024 MGI:1203838 NCBI chr19:51,209,831...51,237,004
Ensembl chr19:51,219,660...51,235,257
JBrowse link
G Ggt1 gamma-glutamyltransferase 1 involved_in ISS
IEA
IBA
ISO
GO_REF:0000024
GO_REF:0000118
GO_REF:0000033
GO_REF:0000002
(PMID:17924658), (PMID:21447318)
UniProt
TreeGrafter
GO_Central
InterPro
RGD
PMID:17924658 PMID:21447318 GO_REF:0000002 GO_REF:0000024 GO_REF:0000033 GO_REF:0000118 NCBI chr20:13,074,695...13,104,095
Ensembl chr20:13,074,700...13,108,442
JBrowse link
G Ggt5 gamma-glutamyltransferase 5 involved_in ISO
IBA
ISS
(PMID:1676842), (PMID:21447318)
GO_REF:0000033
GO_REF:0000024
RGD
GO_Central
UniProt
PMID:1676842 PMID:21447318 GO_REF:0000024 GO_REF:0000033 NCBI chr20:13,043,255...13,071,523
Ensembl chr20:13,043,257...13,071,450
JBrowse link
G Ggt7 gamma-glutamyltransferase 7 involved_in IEA
IBA
GO_REF:0000104
GO_REF:0000033
UniProt
GO_Central
GO_REF:0000033 GO_REF:0000104 NCBI chr 3:143,978,073...144,004,597
Ensembl chr 3:143,978,082...144,001,492
JBrowse link
N(omega),N(omega)-dimethyl-L-arginine catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Agxt2 alanine-glyoxylate aminotransferase 2 involved_in IDA PMID:2123486 UniProt PMID:2123486 RGD:401901222 NCBI chr 2:59,336,252...59,377,664
Ensembl chr 2:59,336,283...59,377,926
JBrowse link
phosphatidylserine catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Abhd12 abhydrolase domain containing 12, lysophospholipase involved_in
acts_upstream_of_or_within
ISO
IBA
IEA
ISS
(PMID:30643283)
GO_REF:0000033
GO_REF:0000118
MGI:5487621 (MGI:5469248|PMID:23297193)
GO_REF:0000024
RGD
GO_Central
TreeGrafter
UniProt
PMID:23297193 PMID:30643283 GO_REF:0000024 GO_REF:0000033 GO_REF:0000118 MGI:5469248 NCBI chr 3:139,659,315...139,719,529
Ensembl chr 3:139,659,317...139,719,564
JBrowse link
G Abhd12b abhydrolase domain containing 12B involved_in IEA GO_REF:0000118 TreeGrafter GO_REF:0000118 NCBI chr 6:88,668,627...88,696,435
Ensembl chr 6:88,668,642...88,696,458
JBrowse link
G Abhd16a abhydrolase domain containing 16A, phospholipase involved_in IEA
IBA
ISO
ISS
GO_REF:0000107
GO_REF:0000033
GO_REF:0000118
(MGI:5779796|PMID:25580854)
GO_REF:0000024
Ensembl
GO_Central
TreeGrafter
RGD
UniProt
PMID:25580854 GO_REF:0000024 GO_REF:0000033 GO_REF:0000107 GO_REF:0000118 MGI:5779796 NCBI chr20:3,719,089...3,733,952
Ensembl chr20:3,719,091...3,733,927
JBrowse link
G Abhd16b abhydrolase domain containing 16B involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 3:168,594,677...168,596,574
Ensembl chr 3:168,594,609...168,619,762
JBrowse link
prenylcysteine catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Pcyox1 prenylcysteine oxidase 1 acts_upstream_of_or_within
involved_in
ISO
IEA
MGI:2449567 (MGI:2388263|PMID:12151402)
GO_REF:0000104
(PMID:11078725), (PMID:12186880)
RGD
UniProt
PMID:11078725 PMID:12151402 PMID:12186880 GO_REF:0000104 MGI:2388263 NCBI chr 4:118,832,114...118,842,951
Ensembl chr 4:118,830,638...118,842,951
JBrowse link
G Pcyox1l prenylcysteine oxidase 1 like involved_in IEA GO_REF:0000104 UniProt GO_REF:0000104 NCBI chr18:55,150,637...55,161,334
Ensembl chr18:55,150,650...55,161,327
JBrowse link
S-adenosylhomocysteine catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ahcy adenosylhomocysteinase acts_upstream_of_or_within IDA
ISO
(MGI:2183618|PMID:12023972) RGD PMID:12023972 PMID:11741948 MGI:2183618, RGD:730275 NCBI chr 3:143,569,134...143,584,359
Ensembl chr 3:143,569,094...143,584,393
JBrowse link
sarcosine catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Sardh sarcosine dehydrogenase involved_in IEA
IBA
GO_REF:0000118
GO_REF:0000033
TreeGrafter
GO_Central
GO_REF:0000033 GO_REF:0000118 NCBI chr 3:10,510,553...10,575,342
Ensembl chr 3:10,510,553...10,573,874
JBrowse link
thyroid hormone catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dio2 iodothyronine deiodinase 2 acts_upstream_of_or_within ISO MGI:2182450 (MGI:2154044|PMID:11731615) RGD PMID:11731615 MGI:2154044 NCBI chr 6:109,665,523...109,679,809
Ensembl chr 6:109,665,523...109,679,809
JBrowse link
G Dio3 iodothyronine deiodinase 3 involved_in
acts_upstream_of_or_within
ISO (MGI:4441081|PMID:20203194)
MGI:2664293 (MGI:3615073|PMID:16410833), (MGI:4441081|PMID:20203194), (MGI:5578402|PMID:25002520)
RGD PMID:16410833 PMID:20203194 PMID:25002520 MGI:3615073 MGI:4441081 MGI:5578402 NCBI chr 6:129,285,747...129,287,608
Ensembl chr 6:129,285,749...129,286,660
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 20325
    metabolic process 11737
      cellular metabolic process 10300
        cellular modified amino acid metabolic process 198
          cellular modified amino acid catabolic process 28
            4-hydroxyproline catabolic process 1
            N(omega),N(omega)-dimethyl-L-arginine catabolic process 1
            N(omega)-methyl-L-arginine catabolic process 0
            S-adenosylhomocysteine catabolic process 1
            amino-acid betaine catabolic process + 3
            cellular modified histidine catabolic process + 0
            folic acid-containing compound catabolic process + 5
            glutathione catabolic process 6
            hydroxylysine catabolic process 0
            lincomycin catabolic process 0
            nopaline catabolic process + 0
            ochratoxin A catabolic process 0
            octopine catabolic process + 0
            pantothenate catabolic process 0
            phosphagen catabolic process + 0
            phosphatidylserine catabolic process 4
            prenylcysteine catabolic process 2
            sarcosine catabolic process 1
            thyroid hormone catabolic process 2
Path 2
Term Annotations click to browse term
  biological_process 20325
    metabolic process 11737
      organic substance metabolic process 11231
        organonitrogen compound metabolic process 5810
          cellular modified amino acid metabolic process 198
            cellular modified amino acid catabolic process 28
              4-hydroxyproline catabolic process 1
              N(omega),N(omega)-dimethyl-L-arginine catabolic process 1
              N(omega)-methyl-L-arginine catabolic process 0
              S-adenosylhomocysteine catabolic process 1
              amino-acid betaine catabolic process + 3
              cellular modified histidine catabolic process + 0
              folic acid-containing compound catabolic process + 5
              glutathione catabolic process 6
              hydroxylysine catabolic process 0
              lincomycin catabolic process 0
              nopaline catabolic process + 0
              ochratoxin A catabolic process 0
              octopine catabolic process + 0
              pantothenate catabolic process 0
              phosphagen catabolic process + 0
              phosphatidylserine catabolic process 4
              prenylcysteine catabolic process 2
              sarcosine catabolic process 1
              thyroid hormone catabolic process 2
paths to the root