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ONTOLOGY REPORT - ANNOTATIONS

Term:regulation of protein catabolic process
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Accession:GO:0042176 term browser browse the term
Definition:Any process that modulates the frequency, rate or extent of the chemical reactions and pathways resulting in the breakdown of a protein by the destruction of the native, active configuration, with or without the hydrolysis of peptide bonds.
Synonyms:exact_synonym: regulation of cellular protein breakdown;   regulation of cellular protein catabolic process;   regulation of cellular protein catabolism;   regulation of cellular protein degradation;   regulation of protein breakdown;   regulation of protein catabolism;   regulation of protein degradation
 narrow_synonym: regulation of cyclin breakdown;   regulation of cyclin catabolic process;   regulation of cyclin catabolism;   regulation of cyclin degradation;   regulation of degradation of cyclin
 alt_id: GO:1903362;   GO:2000598

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regulation of protein catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bmal1 basic helix-loop-helix ARNT like 1 acts_upstream_of_or_within ISO (PMID:12897057) MGI PMID:12897057 NCBI chrNW_004936528:5,167,611...5,239,128
Ensembl chrNW_004936528:5,164,481...5,239,128 		JBrowse link
G Cenatac centrosomal AT-AC splicing factor involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936542:3,965,259...3,974,736
Ensembl chrNW_004936542:3,965,256...3,974,739 		JBrowse link
G Chek2 checkpoint kinase 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936657:2,805,947...2,848,180
Ensembl chrNW_004936657:2,805,959...2,848,180 		JBrowse link
G Chmp6 charged multivesicular body protein 6 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936594:4,769,409...4,775,186
Ensembl chrNW_004936594:4,769,466...4,774,293 		JBrowse link
G Faf1 Fas associated factor 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936522:9,774,943...10,160,987
Ensembl chrNW_004936522:9,784,203...10,161,774 		JBrowse link
G Fam83d family with sequence similarity 83 member D involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936561:2,528,463...2,549,665
Ensembl chrNW_004936561:2,528,404...2,549,711 		JBrowse link
G Furin furin, paired basic amino acid cleaving enzyme involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936483:16,136,099...16,147,945
Ensembl chrNW_004936483:16,136,099...16,144,635 		JBrowse link
G Mdm2 MDM2 proto-oncogene involved_in ISO (PMID:9153395) UniProt PMID:9153395 NCBI chrNW_004936545:6,709,903...6,732,334 JBrowse link
G Odc1 ornithine decarboxylase 1 involved_in ISO (MGI:5574513|PMID:24967154) UniProt PMID:24967154 MGI:5574513 NCBI chrNW_004936532:6,581,717...6,587,116 JBrowse link
G Ppp2ca protein phosphatase 2 catalytic subunit alpha acts_upstream_of_or_within ISO PMID:19029245 MGI PMID:19029245 RGD:8553977 NCBI chrNW_004936647:1,031,118...1,055,961
Ensembl chrNW_004936647:1,031,119...1,055,149 		JBrowse link
G Psmd1 proteasome 26S subunit, non-ATPase 1 involved_in IEA UniProt
InterPro		 GO_REF:0000002 GO_REF:0000104 NCBI chrNW_004936525:5,672,013...5,762,035
Ensembl chrNW_004936525:5,668,186...5,762,364 		JBrowse link
G Psmd2 proteasome 26S subunit ubiquitin receptor, non-ATPase 2 involved_in IEA InterPro GO_REF:0000002 NCBI chrNW_004936578:5,570,969...5,580,334
Ensembl chrNW_004936578:5,570,817...5,580,617 		JBrowse link
G Psmd3 proteasome 26S subunit, non-ATPase 3 involved_in IEA InterPro GO_REF:0000002 NCBI chrNW_004936490:15,118,024...15,135,241
Ensembl chrNW_004936490:15,117,801...15,137,835 		JBrowse link
G Samd9l sterile alpha motif domain containing 9 like acts_upstream_of_or_within ISO (PMID:24029230) MGI PMID:24029230 NCBI chrNW_004936803:731,878...754,540
Ensembl chrNW_004936803:749,740...754,473 		JBrowse link
G Serpinb1 serpin family B member 1 acts_upstream_of_or_within ISO (PMID:12189154) MGI PMID:12189154 NCBI chrNW_004936633:3,917,430...3,926,046
Ensembl chrNW_004936633:3,916,572...3,926,176 		JBrowse link
G Snf8 SNF8 subunit of ESCRT-II involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936490:12,507,147...12,520,424
Ensembl chrNW_004936490:12,507,116...12,523,674 		JBrowse link
G Tmem9 transmembrane protein 9 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936567:3,232,628...3,250,596
Ensembl chrNW_004936567:3,225,511...3,250,684 		JBrowse link
G Ubxn2a UBX domain protein 2A involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:19474315) Ensembl
MGI		 PMID:19474315 GO_REF:0000107 NCBI chrNW_004936493:7,969,271...7,978,537
Ensembl chrNW_004936493:7,971,960...7,985,314 		JBrowse link
G Wdr91 WD repeat domain 91 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936579:734,151...763,672
Ensembl chrNW_004936579:734,109...766,748 		JBrowse link
G Xpo1 exportin 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:15767664) Ensembl
MGI		 PMID:15767664 GO_REF:0000107 NCBI chrNW_004936491:6,921,753...6,962,062
Ensembl chrNW_004936491:6,921,319...6,962,343 		JBrowse link
G Zdhhc2 zinc finger DHHC-type palmitoyltransferase 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936573:6,216,084...6,280,142
Ensembl chrNW_004936573:6,216,078...6,282,052 		JBrowse link
negative regulation of chaperone-mediated autophagy term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ctsa cathepsin A involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936514:7,131,263...7,136,775
Ensembl chrNW_004936514:7,130,848...7,136,536 		JBrowse link
G Snca synuclein alpha involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936685:2,077,017...2,175,298
Ensembl chrNW_004936685:2,076,651...2,175,338 		JBrowse link
negative regulation of ERAD pathway term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Aqp11 aquaporin 11 involved_in ISO (MGI:3813160|PMID:18606867) UniProt PMID:18606867 MGI:3813160 NCBI chrNW_004936498:6,213,583...6,237,273 JBrowse link
G Sgta small glutamine rich tetratricopeptide repeat co-chaperone alpha involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936588:1,599,453...1,616,480
Ensembl chrNW_004936588:1,598,164...1,616,599 		JBrowse link
G Svip small VCP interacting protein involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936654:3,452,781...3,459,161
Ensembl chrNW_004936654:3,453,043...3,459,219 		JBrowse link
G Ubxn1 UBX domain protein 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936581:584,519...587,863
Ensembl chrNW_004936581:584,315...591,612 		JBrowse link
G Ubxn2a UBX domain protein 2A involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936493:7,969,271...7,978,537
Ensembl chrNW_004936493:7,971,960...7,985,314 		JBrowse link
G Usp14 ubiquitin specific peptidase 14 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936550:640,331...675,703
Ensembl chrNW_004936550:635,963...675,832 		JBrowse link
G Usp25 ubiquitin specific peptidase 25 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936505:8,613,588...8,683,560
Ensembl chrNW_004936505:8,548,677...8,681,232 		JBrowse link
negative regulation of low-density lipoprotein particle receptor catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Anxa2 annexin A2 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936471:21,274,112...21,329,286
Ensembl chrNW_004936471:21,274,027...21,329,503 		JBrowse link
G Furin furin, paired basic amino acid cleaving enzyme involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936483:16,136,099...16,147,945
Ensembl chrNW_004936483:16,136,099...16,144,635 		JBrowse link
negative regulation of lysosomal protein catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Laptm4b lysosomal protein transmembrane 4 beta involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936470:44,917,462...44,981,773
Ensembl chrNW_004936470:44,914,011...44,982,065 		JBrowse link
G Mgat3 beta-1,4-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase acts_upstream_of_or_within ISO (PMID:25592972), (PMID:26467158) MGI PMID:25592972 PMID:26467158 NCBI chrNW_004936492:2,144,775...2,149,344
Ensembl chrNW_004936492:2,144,732...2,186,871 		JBrowse link
G Usp8 ubiquitin specific peptidase 8 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936471:12,463,189...12,524,148
Ensembl chrNW_004936471:12,463,120...12,520,674 		JBrowse link
G Vps35 VPS35 retromer complex component involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936475:50,476...77,797
Ensembl chrNW_004936475:50,321...78,097 		JBrowse link
negative regulation of membrane protein ectodomain proteolysis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Il10 interleukin 10 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936557:5,834,874...5,838,502
Ensembl chrNW_004936557:5,834,874...5,838,502 		JBrowse link
G Lrig2 leucine rich repeats and immunoglobulin like domains 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:26651291) Ensembl
MGI		 PMID:26651291 GO_REF:0000107 NCBI chrNW_004936690:1,591,741...1,642,183
Ensembl chrNW_004936690:1,591,965...1,641,544 		JBrowse link
G Ptpn3 protein tyrosine phosphatase non-receptor type 3 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936559:3,436,114...3,547,316
Ensembl chrNW_004936559:3,436,651...3,547,275 		JBrowse link
G Timp1 TIMP metallopeptidase inhibitor 1 involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936502:13,345,936...13,350,170
Ensembl chrNW_004936502:13,345,832...13,350,248 		JBrowse link
G Timp2 TIMP metallopeptidase inhibitor 2 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936594:3,232,433...3,244,241
Ensembl chrNW_004936594:3,232,355...3,244,241 		JBrowse link
G Timp3 TIMP metallopeptidase inhibitor 3 involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936492:6,996,627...7,046,137
Ensembl chrNW_004936492:6,996,613...7,046,190 		JBrowse link
G Timp4 TIMP metallopeptidase inhibitor 4 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936602:1,488,993...1,496,108
Ensembl chrNW_004936602:1,489,545...1,495,478 		JBrowse link
negative regulation of proteasomal protein catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Alad aminolevulinate dehydratase involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936559:226,481...237,258
Ensembl chrNW_004936559:226,424...241,684 		JBrowse link
G F8a1 coagulation factor VIII associated 1 involved_in ISO (PMID:27815841) UniProt PMID:27815841 NCBI chrNW_004936927:234,162...236,881 JBrowse link
G Gabarapl2 GABA type A receptor associated protein like 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936475:24,238,262...24,249,249
Ensembl chrNW_004936475:24,238,209...24,249,557 		JBrowse link
G Hsp90ab1 heat shock protein 90 alpha family class B member 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936476:15,830,459...15,836,994
Ensembl chrNW_004936476:15,830,459...15,835,535 		JBrowse link
G Lamp3 lysosomal associated membrane protein 3 involved_in ISO (PMID:25681212) ParkinsonsUK-UCL PMID:25681212 NCBI chrNW_004936566:365,326...394,985 JBrowse link
G LOC101974307 protein SCO1 homolog, mitochondrial acts_upstream_of_or_within ISO (PMID:25683716) MGI PMID:25683716 NCBI chrNW_004936595:3,523,789...3,537,933
Ensembl chrNW_004936595:3,523,779...3,538,150 		JBrowse link
G Marchf7 membrane associated ring-CH-type finger 7 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936469:18,966,239...19,016,829
Ensembl chrNW_004936469:18,962,655...19,017,100 		JBrowse link
G Ophn1 oligophrenin 1 involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936635:6,966...243,209
Ensembl chrNW_004936635:6,923...244,408 		JBrowse link
G Prkcg protein kinase C gamma involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936994:87,525...105,125
Ensembl chrNW_004936994:87,519...105,134 		JBrowse link
G Psme3ip1 proteasome activator subunit 3 interacting protein 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936475:9,266,778...9,294,173
Ensembl chrNW_004936475:9,268,337...9,294,163 		JBrowse link
G Psmf1 proteasome inhibitor subunit 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936485:17,485,600...17,517,642
Ensembl chrNW_004936485:17,485,602...17,517,696 		JBrowse link
G Usp19 ubiquitin specific peptidase 19 involved_in ISO (MGI:5614537|PMID:25088257) ParkinsonsUK-UCL PMID:25088257 MGI:5614537 NCBI chrNW_004936529:814,649...826,008
Ensembl chrNW_004936529:813,951...826,014 		JBrowse link
negative regulation of proteasomal ubiquitin-dependent protein catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bag5 BAG cochaperone 5 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936621:1,573,237...1,578,257
Ensembl chrNW_004936621:1,574,033...1,575,376 		JBrowse link
G Bag6 BAG cochaperone 6 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936727:1,866,235...1,885,266
Ensembl chrNW_004936727:1,873,413...1,885,366 		JBrowse link
G Camlg calcium modulating ligand involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936597:1,979,029...1,988,281
Ensembl chrNW_004936597:1,978,974...1,989,851 		JBrowse link
G Ccar2 cell cycle and apoptosis regulator 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936555:6,341,455...6,356,677
Ensembl chrNW_004936555:6,341,390...6,356,668 		JBrowse link
G Clec16a C-type lectin domain containing 16A acts_upstream_of_or_within ISO (PMID:24949970) MGI PMID:24949970 NCBI chrNW_004936530:9,089,478...9,264,563
Ensembl chrNW_004936530:9,089,476...9,264,592 		JBrowse link
G Csnk2a1 casein kinase 2 alpha 1 involved_in ISO (PMID:28031292) ARUK-UCL PMID:28031292 NCBI chrNW_004936485:17,966,993...18,021,191 JBrowse link
G Csnk2a2 casein kinase 2 alpha 2 involved_in ISO (PMID:28031292) ARUK-UCL PMID:28031292 NCBI chrNW_004936475:10,030,408...10,073,576
Ensembl chrNW_004936475:10,033,717...10,075,511 		JBrowse link
G Csnk2b casein kinase 2 beta involved_in ISO (PMID:28031292) ARUK-UCL PMID:28031292 NCBI chrNW_004936727:1,857,596...1,862,551
Ensembl chrNW_004936727:1,857,596...1,862,002 		JBrowse link
G Ddrgk1 DDRGK domain containing 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936485:15,516,348...15,526,380
Ensembl chrNW_004936485:15,516,302...15,526,376 		JBrowse link
G Eif3h eukaryotic translation initiation factor 3 subunit H involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936470:29,509,154...29,606,124
Ensembl chrNW_004936470:29,509,151...29,606,124 		JBrowse link
G Fhit fragile histidine triad diadenosine triphosphatase involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936473:397,140...1,424,805
Ensembl chrNW_004936473:676,237...1,424,506 		JBrowse link
G Gipc1 GIPC PDZ domain containing family member 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936659:3,019,829...3,030,280
Ensembl chrNW_004936659:3,012,012...3,026,883 		JBrowse link
G Hfe homeostatic iron regulator involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936671:1,940,079...1,947,574
Ensembl chrNW_004936671:1,940,101...1,947,580 		JBrowse link
G Hsp90ab1 heat shock protein 90 alpha family class B member 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936476:15,830,459...15,836,994
Ensembl chrNW_004936476:15,830,459...15,835,535 		JBrowse link
G Klhl40 kelch like family member 40 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:24960163) TreeGrafter
MGI		 PMID:24960163 GO_REF:0000118 NCBI chrNW_004936695:2,417,938...2,424,622
Ensembl chrNW_004936695:2,414,573...2,424,702 		JBrowse link
G LOC101960348 E3 ubiquitin-protein ligase TRIM39 involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936837:88,387...104,420
Ensembl chrNW_004936837:105,575...107,719
Ensembl chrNW_004936837:105,575...107,719 		JBrowse link
G Map1a microtubule associated protein 1A involved_in ISO (MGI:5703671|PMID:26609151) ARUK-UCL PMID:26609151 MGI:5703671 NCBI chrNW_004936471:6,685,565...6,706,860
Ensembl chrNW_004936471:6,685,728...6,705,477 		JBrowse link
G Mtm1 myotubularin 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:23695157) Ensembl
MGI		 PMID:23695157 GO_REF:0000107 NCBI chrNW_004936714:1,792,893...1,870,338
Ensembl chrNW_004936714:1,792,845...1,870,389 		JBrowse link
G N4bp1 NEDD4 binding protein 1 involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936475:1,743,205...1,765,466
Ensembl chrNW_004936475:1,741,528...1,765,491 		JBrowse link
G Nop53 NOP53 ribosome biogenesis factor involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936664:1,334,487...1,343,867
Ensembl chrNW_004936664:1,334,510...1,342,321 		JBrowse link
G Ogt O-linked N-acetylglucosamine (GlcNAc) transferase involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936762:99,335...137,833
Ensembl chrNW_004936762:99,293...137,874 		JBrowse link
G Park7 Parkinsonism associated deglycase involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936623:2,422,780...2,436,817
Ensembl chrNW_004936623:2,422,833...2,436,817 		JBrowse link
G Pbk PDZ binding kinase involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:21715333) Ensembl
MGI		 PMID:21715333 GO_REF:0000107 NCBI chrNW_004936675:704,001...722,769
Ensembl chrNW_004936675:704,516...722,755 		JBrowse link
G Phf20l1 PHD finger protein 20 like 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936470:16,406,293...16,475,384
Ensembl chrNW_004936470:16,406,653...16,475,586 		JBrowse link
G Rpl11 ribosomal protein L11 involved_in ISO (MGI:5897550|PMID:21804542) UniProt PMID:21804542 MGI:5897550 NCBI chrNW_004936474:8,855,782...8,858,287 JBrowse link
G Rybp RING1 and YY1 binding protein involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936603:3,618,715...3,693,007
Ensembl chrNW_004936603:3,618,795...3,690,410 		JBrowse link
G Senp1 SUMO specific peptidase 1 acts_upstream_of_or_within ISO (PMID:17981124) MGI PMID:17981124 NCBI chrNW_004936512:5,932,594...5,989,819
Ensembl chrNW_004936512:5,937,814...5,989,855 		JBrowse link
G Shh sonic hedgehog signaling molecule involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:16611981) Ensembl
MGI		 PMID:16611981 GO_REF:0000107 NCBI chrNW_004936527:10,033,095...10,042,713
Ensembl chrNW_004936527:10,033,299...10,042,599 		JBrowse link
G Smarcc1 SWI/SNF related, matrix associated, actin dependent regulator of chromatin subfamily c member 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:22285184) Ensembl
MGI		 PMID:22285184 GO_REF:0000107 NCBI chrNW_004936596:1,257,723...1,407,358
Ensembl chrNW_004936596:1,255,054...1,408,038 		JBrowse link
G Taf9 TATA-box binding protein associated factor 9 involved_in ISO (PMID:11278372) BHF-UCL PMID:11278372 NCBI chrNW_004936480:252,435...256,609
Ensembl chrNW_004936480:252,435...256,609 		JBrowse link
G Tlk2 tousled like kinase 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936541:3,303,563...3,422,093
Ensembl chrNW_004936541:3,302,872...3,423,058 		JBrowse link
G Ttc36 tetratricopeptide repeat domain 36 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:31537781) Ensembl
MGI		 PMID:31537781 GO_REF:0000107 NCBI chrNW_004936542:3,567,469...3,571,393
Ensembl chrNW_004936542:3,566,876...3,571,504 		JBrowse link
G Ubxn1 UBX domain protein 1 involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936581:584,519...587,863
Ensembl chrNW_004936581:584,315...591,612 		JBrowse link
G Uchl5 ubiquitin C-terminal hydrolase L5 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936638:1,242,950...1,289,376
Ensembl chrNW_004936638:1,242,893...1,290,512 		JBrowse link
G Usp26 ubiquitin specific peptidase 26 involved_in ISO (PMID:28839133)
(MGI:5926846|PMID:28839133)		 UniProt PMID:28839133 MGI:5926846 NCBI chrNW_004936691:1,913,416...1,916,214 JBrowse link
G Usp38 ubiquitin specific peptidase 38 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936535:5,146,327...5,178,184
Ensembl chrNW_004936535:5,146,327...5,178,205 		JBrowse link
G Usp7 ubiquitin specific peptidase 7 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936530:7,693,681...7,724,215
Ensembl chrNW_004936530:7,694,379...7,724,684 		JBrowse link
G Usp9x ubiquitin specific peptidase 9 X-linked involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936502:7,649,808...7,732,731
Ensembl chrNW_004936502:7,649,842...7,735,382 		JBrowse link
G Wac WW domain containing adaptor with coiled-coil involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936613:2,793,706...2,862,984
Ensembl chrNW_004936613:2,794,732...2,865,913 		JBrowse link
negative regulation of protein catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Agap2 ArfGAP with GTPase domain, ankyrin repeat and PH domain 2 acts_upstream_of_or_within ISO (PMID:18374643) MGI PMID:18374643 NCBI chrNW_004936646:1,865,154...1,881,614
Ensembl chrNW_004936646:1,865,395...1,876,453 		JBrowse link
G Atraid all-trans retinoic acid induced differentiation factor involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936493:5,333,151...5,338,157
Ensembl chrNW_004936493:5,333,169...5,338,116 		JBrowse link
G Azin1 antizyme inhibitor 1 involved_in ISO
IEA		 downregulates antizyme degradation of ODC RGD
TreeGrafter
Ensembl		 PMID:8631929 GO_REF:0000107 GO_REF:0000118 RGD:633334 NCBI chrNW_004936470:40,801,943...40,832,543
Ensembl chrNW_004936470:40,801,943...40,834,003 		JBrowse link
G Azin2 antizyme inhibitor 2 involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936474:15,941,655...15,973,481
Ensembl chrNW_004936474:15,941,620...15,973,745 		JBrowse link
G Banp BTG3 associated nuclear protein involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:15701641) TreeGrafter
MGI		 PMID:15701641 GO_REF:0000118 NCBI chrNW_004936641:1,386,592...1,472,750
Ensembl chrNW_004936641:1,387,102...1,472,803 		JBrowse link
G Cdk2 cyclin dependent kinase 2 involved_in ISO (PMID:15750306) AgBase PMID:15750306 NCBI chrNW_004936646:379,849...385,648
Ensembl chrNW_004936646:379,842...385,877 		JBrowse link
G Cdk5rap3 CDK5 regulatory subunit associated protein 3 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936490:13,345,443...13,355,841
Ensembl chrNW_004936490:13,345,443...13,355,841 		JBrowse link
G Dab2ip DAB2 interacting protein involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936487:10,056,809...10,243,021
Ensembl chrNW_004936487:10,145,278...10,243,174 		JBrowse link
G Dedd death effector domain containing involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:21135503) Ensembl
MGI		 PMID:21135503 GO_REF:0000107 NCBI chrNW_004936903:436,949...448,670
Ensembl chrNW_004936903:435,447...448,025 		JBrowse link
G Dysf dysferlin acts_upstream_of_or_within ISO (PMID:20724702) MGI PMID:20724702 NCBI chrNW_004936491:15,412,606...15,618,519
Ensembl chrNW_004936491:15,413,206...15,618,519 		JBrowse link
G Egfr epidermal growth factor receptor involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936678:365,005...560,546
Ensembl chrNW_004936678:365,834...436,528 		JBrowse link
G Fbxo43 F-box protein 43 acts_upstream_of_or_within ISO (PMID:16966421) MGI PMID:16966421 NCBI chrNW_004936470:43,091,516...43,100,973
Ensembl chrNW_004936470:43,088,714...43,100,973 		JBrowse link
G Flna filamin A involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936809:1,097,288...1,123,206
Ensembl chrNW_004936809:1,097,294...1,123,201 		JBrowse link
G Fmn2 formin 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936526:9,832,790...10,169,488
Ensembl chrNW_004936526:9,833,128...10,169,267 		JBrowse link
G Fyn FYN proto-oncogene, Src family tyrosine kinase involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:16841086) Ensembl
MGI		 PMID:16841086 GO_REF:0000107 NCBI chrNW_004936679:388,500...588,518
Ensembl chrNW_004936679:387,387...443,880 		JBrowse link
G Grin2a glutamate ionotropic receptor NMDA type subunit 2A involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:15317856) Ensembl
MGI		 PMID:15317856 GO_REF:0000107 NCBI chrNW_004936530:8,286,101...8,612,183
Ensembl chrNW_004936530:8,287,574...8,608,343 		JBrowse link
G Grin2c glutamate ionotropic receptor NMDA type subunit 2C involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:15317856) Ensembl
MGI		 PMID:15317856 GO_REF:0000107 NCBI chrNW_004936594:197,337...208,468
Ensembl chrNW_004936594:197,737...208,376 		JBrowse link
G Hmgcr 3-hydroxy-3-methylglutaryl-CoA reductase involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936549:1,378,536...1,400,501
Ensembl chrNW_004936549:1,378,736...1,400,532 		JBrowse link
G Ins insulin involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936816:1,002,137...1,003,357
Ensembl chrNW_004936816:1,002,137...1,003,357 		JBrowse link
G Irak3 interleukin 1 receptor associated kinase 3 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936545:4,233,353...4,284,324
Ensembl chrNW_004936545:4,233,358...4,282,806 		JBrowse link
G LOC101955024 lanosterol 14-alpha demethylase involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936621:2,209,255...2,232,404
Ensembl chrNW_004936621:2,209,199...2,232,531 		JBrowse link
G LOC101964702 adhesion G protein-coupled receptor B1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936470:9,247,749...9,313,230
Ensembl chrNW_004936470:9,248,319...9,313,230 		JBrowse link
G Mad2l1 mitotic arrest deficient 2 like 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936662:92,421...98,531
Ensembl chrNW_004936662:92,328...99,517 		JBrowse link
G Mad2l2 mitotic arrest deficient 2 like 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936474:538,703...542,901
Ensembl chrNW_004936474:538,625...542,901 		JBrowse link
G Mdm4 MDM4 regulator of p53 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936567:268,151...299,494
Ensembl chrNW_004936567:268,151...299,494 		JBrowse link
G Mycbp2 MYC binding protein 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:19398581) Ensembl
MGI		 PMID:19398581 GO_REF:0000107 NCBI chrNW_004936511:3,977,950...4,248,959
Ensembl chrNW_004936511:3,978,246...4,249,234 		JBrowse link
G Nell1 neural EGFL like 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936654:1,591,016...2,392,496
Ensembl chrNW_004936654:1,591,847...2,394,692 		JBrowse link
G Nos2 nitric oxide synthase 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936538:4,052,277...4,097,051
Ensembl chrNW_004936538:4,052,448...4,097,051 		JBrowse link
G Nqo1 NAD(P)H quinone dehydrogenase 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936475:19,771,384...19,785,034
Ensembl chrNW_004936475:19,769,488...19,785,311 		JBrowse link
G Nrg1 neuregulin 1 acts_upstream_of_or_within ISO (PMID:20448149) MGI PMID:20448149 NCBI chrNW_004936766:1,104,841...1,306,368
Ensembl chrNW_004936766:1,104,728...1,305,972 		JBrowse link
G Park7 Parkinsonism associated deglycase involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936623:2,422,780...2,436,817
Ensembl chrNW_004936623:2,422,833...2,436,817 		JBrowse link
G Phb1 prohibitin 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936490:12,127,065...12,138,870 JBrowse link
G Phf20l1 PHD finger protein 20 like 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936470:16,406,293...16,475,384
Ensembl chrNW_004936470:16,406,653...16,475,586 		JBrowse link
G Pin1 peptidylprolyl cis/trans isomerase, NIMA-interacting 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936659:309,530...321,294
Ensembl chrNW_004936659:309,506...321,334 		JBrowse link
G Prkcg protein kinase C gamma involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936994:87,525...105,125
Ensembl chrNW_004936994:87,519...105,134 		JBrowse link
G Rela RELA proto-oncogene, NF-kB subunit involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:15923614) Ensembl
MGI		 PMID:15923614 GO_REF:0000107 NCBI chrNW_004936599:3,800,142...3,810,583
Ensembl chrNW_004936599:3,801,636...3,809,813 		JBrowse link
G Rgp1 RGP1 homolog, RAB6A GEF complex partner 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936524:3,742,590...3,746,371
Ensembl chrNW_004936524:3,742,596...3,750,742 		JBrowse link
G Ric1 RIC1 homolog, RAB6A GEF complex partner 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936539:290,429...404,928
Ensembl chrNW_004936539:290,416...404,881 		JBrowse link
G Rilp Rab interacting lysosomal protein involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936538:7,775,942...7,779,563
Ensembl chrNW_004936538:7,775,942...7,779,365 		JBrowse link
G Serpine2 serpin family E member 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:15509762)
(PMID:16319172)		 Ensembl
MGI		 PMID:15509762 PMID:16319172 GO_REF:0000107 NCBI chrNW_004936569:5,642,328...5,668,278
Ensembl chrNW_004936569:5,642,264...5,668,323 		JBrowse link
G Sf3b3 splicing factor 3b subunit 3 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936475:23,038,424...23,086,134
Ensembl chrNW_004936475:23,037,687...23,086,188 		JBrowse link
G Shh sonic hedgehog signaling molecule involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:16611981) Ensembl
MGI		 PMID:16611981 GO_REF:0000107 NCBI chrNW_004936527:10,033,095...10,042,713
Ensembl chrNW_004936527:10,033,299...10,042,599 		JBrowse link
G Sirt2 sirtuin 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936661:1,828,868...1,849,892
Ensembl chrNW_004936661:1,828,831...1,850,000 		JBrowse link
G Smad3 SMAD family member 3 involved_in ISO PMID:16690606
PMID:20097766		 CACAO
BHF-UCL		 PMID:16690606 PMID:20097766 RGD:11079190 RGD:15023472 NCBI chrNW_004936471:27,080,662...27,185,861
Ensembl chrNW_004936471:27,080,575...27,189,793 		JBrowse link
G Smad4 SMAD family member 4 involved_in ISO PMID:20097766 BHF-UCL PMID:20097766 RGD:11079190 NCBI chrNW_004936497:12,242,869...12,278,012
Ensembl chrNW_004936497:12,249,140...12,278,123 		JBrowse link
G Snx12 sorting nexin 12 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936762:523,641...534,646
Ensembl chrNW_004936762:523,564...542,757 		JBrowse link
G Snx3 sorting nexin 3 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936564:4,472,171...4,520,732
Ensembl chrNW_004936564:4,471,652...4,520,785 		JBrowse link
G Tmem132a transmembrane protein 132A involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:33324648) Ensembl
MGI		 PMID:33324648 GO_REF:0000107 NCBI chrNW_004936581:1,996,838...2,006,118
Ensembl chrNW_004936581:1,995,941...2,006,059 		JBrowse link
G Trim40 tripartite motif containing 40 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936723:897,213...909,263
Ensembl chrNW_004936723:896,054...909,263 		JBrowse link
negative regulation of SCF-dependent proteasomal ubiquitin-dependent catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Pabpn1l PABPN1 like, cytoplasmic acts_upstream_of_or_within ISO (PMID:32558204) MGI PMID:32558204 NCBI chrNW_004936641:880,548...883,098
Ensembl chrNW_004936641:880,548...883,098 		JBrowse link
G Styx serine/threonine/tyrosine interacting protein involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936697:2,087,689...2,120,507
Ensembl chrNW_004936697:2,088,043...2,120,586 		JBrowse link
positive regulation of anaphase-promoting complex-dependent catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cdc20 cell division cycle 20 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936474:24,760,258...24,765,069
Ensembl chrNW_004936474:24,760,298...24,767,725 		JBrowse link
G Cdc20b cell division cycle 20B involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936480:12,593,216...12,640,661
Ensembl chrNW_004936480:12,593,216...12,640,661 		JBrowse link
G Fzr1 fizzy and cell division cycle 20 related 1 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936588:2,000,872...2,007,569
Ensembl chrNW_004936588:1,993,721...2,009,240 		JBrowse link
positive regulation of chaperone-mediated autophagy term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Plk3 polo like kinase 3 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936474:26,026,878...26,032,098
Ensembl chrNW_004936474:26,026,842...26,032,218 		JBrowse link
positive regulation of ERAD pathway term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Atxn3 ataxin 3 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936733:306,400...347,161
Ensembl chrNW_004936733:310,836...347,112 		JBrowse link
G Bag6 BAG cochaperone 6 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936727:1,866,235...1,885,266
Ensembl chrNW_004936727:1,873,413...1,885,366 		JBrowse link
G Bcap31 B cell receptor associated protein 31 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936809:582,689...614,800
Ensembl chrNW_004936809:582,649...615,079 		JBrowse link
G Cav1 caveolin 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936589:2,504,235...2,536,778
Ensembl chrNW_004936589:2,504,224...2,537,170 		JBrowse link
G Herpud1 homocysteine inducible ER protein with ubiquitin like domain 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936475:9,091,115...9,102,101
Ensembl chrNW_004936475:9,091,176...9,102,109 		JBrowse link
G Rnf185 ring finger protein 185 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936755:331,658...367,604
Ensembl chrNW_004936755:331,619...367,533 		JBrowse link
G Rnft1 ring finger protein, transmembrane 1 involved_in IEA InterPro
TreeGrafter
Ensembl		 GO_REF:0000002 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936490:3,426,692...3,439,179
Ensembl chrNW_004936490:3,426,762...3,438,900 		JBrowse link
G Rnft2 ring finger protein, transmembrane 2 involved_in IEA InterPro GO_REF:0000002 NCBI chrNW_004936558:5,581,539...5,650,826
Ensembl chrNW_004936558:5,584,225...5,649,018 		JBrowse link
G Sgta small glutamine rich tetratricopeptide repeat co-chaperone alpha involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936588:1,599,453...1,616,480
Ensembl chrNW_004936588:1,598,164...1,616,599 		JBrowse link
G Stub1 STIP1 homology and U-box containing protein 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936501:328,767...330,963
Ensembl chrNW_004936501:326,451...330,983 		JBrowse link
G Tmem259 transmembrane protein 259 involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936588:440,460...449,440
Ensembl chrNW_004936588:441,135...449,444 		JBrowse link
G Tmem67 transmembrane protein 67 ISO RGD PMID:19815549 RGD:8554391 NCBI chrNW_004936544:6,887,867...6,931,669
Ensembl chrNW_004936544:6,887,532...6,932,179 		JBrowse link
G Tmx1 thioredoxin related transmembrane protein 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936495:14,432,971...14,447,380
Ensembl chrNW_004936495:14,431,137...14,447,476 		JBrowse link
G Ubqln1 ubiquilin 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936828:543,651...588,673
Ensembl chrNW_004936828:542,407...588,679 		JBrowse link
G Ubqln2 ubiquilin 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936819:530,833...534,185
Ensembl chrNW_004936819:532,037...533,920 		JBrowse link
G Usp13 ubiquitin specific peptidase 13 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936566:3,416,468...3,522,127
Ensembl chrNW_004936566:3,416,389...3,522,133 		JBrowse link
G Wfs1 wolframin ER transmembrane glycoprotein involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936477:18,339,915...18,364,973
Ensembl chrNW_004936477:18,339,827...18,364,998 		JBrowse link
positive regulation of low-density lipoprotein particle receptor catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Abca2 ATP binding cassette subfamily A member 2 acts_upstream_of
involved_in		 ISO
IEA		 (PMID:21810484) ARUK-UCL
Ensembl		 PMID:21810484 GO_REF:0000107 NCBI chrNW_004936669:922,978...941,996
Ensembl chrNW_004936669:926,622...942,167 		JBrowse link
G Apoe apolipoprotein E involved_in ISO (PMID:15950758) BHF-UCL PMID:15950758 NCBI chrNW_004936706:1,512,438...1,516,805 JBrowse link
G Pcsk9 proprotein convertase subtilisin/kexin type 9 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936522:6,271,339...6,300,202
Ensembl chrNW_004936522:6,272,507...6,299,917 		JBrowse link
positive regulation of lysosomal protein catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Hnrnpm heterogeneous nuclear ribonucleoprotein M involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936588:5,241,276...5,283,952
Ensembl chrNW_004936588:5,222,509...5,239,890
Ensembl chrNW_004936588:5,222,509...5,239,890 		JBrowse link
G Ldlr low density lipoprotein receptor involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936659:1,259,405...1,300,545
Ensembl chrNW_004936659:1,259,369...1,302,294 		JBrowse link
G Lrp1 LDL receptor related protein 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936646:1,326,900...1,407,236
Ensembl chrNW_004936646:1,327,374...1,406,456 		JBrowse link
G Lrp2 LDL receptor related protein 2 involved_in ISO (PMID:9228033) ARUK-UCL PMID:9228033 NCBI chrNW_004936469:10,245,001...10,438,933
Ensembl chrNW_004936469:10,244,881...10,438,935 		JBrowse link
positive regulation of membrane protein ectodomain proteolysis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Adam8 ADAM metallopeptidase domain 8 involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936486:19,389,925...19,403,577
Ensembl chrNW_004936486:19,391,324...19,402,332 		JBrowse link
G Adam9 ADAM metallopeptidase domain 9 involved_in ISO (MGI:1326990|PMID:9857183) BHF-UCL PMID:9857183 MGI:1326990 NCBI chrNW_004936710:2,301,470...2,388,533
Ensembl chrNW_004936710:2,301,730...2,387,695 		JBrowse link
G Adra2a adrenoceptor alpha 2A involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936486:1,837,785...1,841,019
Ensembl chrNW_004936486:1,838,176...1,839,630 		JBrowse link
G Apoe apolipoprotein E involved_in ISO (PMID:15950758)
(PMID:25015123)		 BHF-UCL
ARUK-UCL		 PMID:15950758 PMID:25015123 NCBI chrNW_004936706:1,512,438...1,516,805 JBrowse link
G App amyloid beta precursor protein involved_in ISO (PMID:25015123) ARUK-UCL PMID:25015123 NCBI chrNW_004936640:1,549,977...1,787,436
Ensembl chrNW_004936640:1,550,167...1,787,286 		JBrowse link
G Gpld1 glycosylphosphatidylinositol specific phospholipase D1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936671:780,173...827,628
Ensembl chrNW_004936671:782,135...827,771 		JBrowse link
G Ifng interferon gamma involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936545:6,139,130...6,144,543
Ensembl chrNW_004936545:6,139,116...6,148,452 		JBrowse link
G Il1b interleukin 1 beta involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936783:1,251,678...1,256,807
Ensembl chrNW_004936783:1,252,158...1,257,165 		JBrowse link
G Nrdc nardilysin convertase involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936522:9,041,204...9,129,674
Ensembl chrNW_004936522:9,041,111...9,129,327 		JBrowse link
G Pacsin3 protein kinase C and casein kinase substrate in neurons 3 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936562:1,988,839...1,995,597
Ensembl chrNW_004936562:1,989,662...1,995,580 		JBrowse link
G Rgma repulsive guidance molecule BMP co-receptor a involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:26651291) Ensembl
MGI		 PMID:26651291 GO_REF:0000107 NCBI chrNW_004936483:9,753,112...9,792,817
Ensembl chrNW_004936483:9,766,275...9,793,001 		JBrowse link
G Sh3d19 SH3 domain containing 19 involved_in ISO (PMID:15280379) BHF-UCL PMID:15280379 NCBI chrNW_004936689:1,147,350...1,241,202
Ensembl chrNW_004936689:1,147,353...1,239,064 		JBrowse link
G Snx33 sorting nexin 33 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936471:34,414,086...34,425,236
Ensembl chrNW_004936471:34,414,474...34,428,784 		JBrowse link
G Snx9 sorting nexin 9 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936489:9,736,255...9,804,841
Ensembl chrNW_004936489:9,736,242...9,804,874 		JBrowse link
G Tnf tumor necrosis factor involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936727:1,936,066...1,937,766
Ensembl chrNW_004936727:1,936,066...1,937,766 		JBrowse link
G Tnfrsf1b TNF receptor superfamily member 1B involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936474:908,414...935,765
Ensembl chrNW_004936474:908,485...934,177 		JBrowse link
positive regulation of proteasomal protein catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bag2 BAG cochaperone 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936476:4,131,159...4,142,357
Ensembl chrNW_004936476:4,129,013...4,142,357 		JBrowse link
G Dab2ip DAB2 interacting protein involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936487:10,056,809...10,243,021
Ensembl chrNW_004936487:10,145,278...10,243,174 		JBrowse link
G Ddrgk1 DDRGK domain containing 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936485:15,516,348...15,526,380
Ensembl chrNW_004936485:15,516,302...15,526,376 		JBrowse link
G Ecscr endothelial cell surface expressed chemotaxis and apoptosis regulator acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:19416853) MGI
TreeGrafter
Ensembl		 PMID:19416853 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936531:8,533,926...8,542,516
Ensembl chrNW_004936531:8,532,353...8,542,551 		JBrowse link
G Fbxw7 F-box and WD repeat domain containing 7 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936689:2,261,163...2,449,951
Ensembl chrNW_004936689:2,259,477...2,344,764 		JBrowse link
G Fmr1 Fragile X messenger ribonucleoprotein 1 involved_in ISO (MGI:5770038|PMID:24709664) UniProt PMID:24709664 MGI:5770038 NCBI chrNW_004936513:1,290,038...1,327,850
Ensembl chrNW_004936513:1,289,558...1,327,856 		JBrowse link
G Kcne2 potassium voltage-gated channel subfamily E regulatory subunit 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936500:8,067,009...8,072,383
Ensembl chrNW_004936500:8,068,188...8,068,553 		JBrowse link
G LOC101972090 26S proteasome regulatory subunit 4-like involved_in IEA GOC GO_REF:0000108 NCBI chrNW_004936511:7,890,654...7,892,253 JBrowse link
G Nupr1 nuclear protein 1, transcriptional regulator involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936501:11,998,064...11,999,431
Ensembl chrNW_004936501:11,997,834...11,999,709 		JBrowse link
G Oaz1 ornithine decarboxylase antizyme 1 ISO RGD PMID:12359729 RGD:7245486 NCBI chrNW_004936588:1,356,769...1,361,037
Ensembl chrNW_004936588:1,356,769...1,361,037 		JBrowse link
G Osbpl7 oxysterol binding protein like 7 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936490:13,491,704...13,506,742
Ensembl chrNW_004936490:13,491,544...13,506,768 		JBrowse link
G Prkn parkin RBR E3 ubiquitin protein ligase involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936489:12,118,538...12,913,664
Ensembl chrNW_004936489:12,120,678...13,327,872 		JBrowse link
G Psmc1 proteasome 26S subunit, ATPase 1 involved_in IEA GOC GO_REF:0000108 NCBI chrNW_004936488:17,455,612...17,468,933
Ensembl chrNW_004936488:17,455,461...17,469,527 		JBrowse link
G Psmc2 proteasome 26S subunit, ATPase 2 involved_in IEA GOC GO_REF:0000108 NCBI chrNW_004936479:20,150,738...20,167,765
Ensembl chrNW_004936479:20,148,632...20,168,130 		JBrowse link
G Psmc3 proteasome 26S subunit, ATPase 3 involved_in IEA GOC GO_REF:0000108 NCBI chrNW_004936562:1,810,883...1,817,040
Ensembl chrNW_004936562:1,810,864...1,823,077 		JBrowse link
G Psmc4 proteasome 26S subunit, ATPase 4 involved_in IEA GOC GO_REF:0000108 NCBI chrNW_004936661:2,522,665...2,528,279
Ensembl chrNW_004936661:2,522,615...2,528,284 		JBrowse link
G Psmc5 proteasome 26S subunit, ATPase 5 involved_in IEA GOC GO_REF:0000108 NCBI chrNW_004936541:4,470,210...4,475,233 JBrowse link
G Psmc6 proteasome 26S subunit, ATPase 6 involved_in IEA GOC GO_REF:0000108 NCBI chrNW_004936697:2,122,727...2,143,988
Ensembl chrNW_004936697:2,121,677...2,144,066 		JBrowse link
G Rnf40 ring finger protein 40 ISO RGD PMID:12121982 RGD:633892 NCBI chrNW_004936501:13,154,963...13,167,211
Ensembl chrNW_004936501:13,154,999...13,167,199 		JBrowse link
G Tmtc3 transmembrane O-mannosyltransferase targeting cadherins 3 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936507:5,305,489...5,349,828
Ensembl chrNW_004936507:5,305,460...5,352,337 		JBrowse link
G Trem2 triggering receptor expressed on myeloid cells 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936476:18,659,725...18,665,406
Ensembl chrNW_004936476:18,659,815...18,663,940 		JBrowse link
positive regulation of proteasomal ubiquitin-dependent protein catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Akt1 AKT serine/threonine kinase 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:15937334) Ensembl
MGI		 PMID:15937334 GO_REF:0000107 NCBI chrNW_004936621:620,163...639,115
Ensembl chrNW_004936621:620,074...639,093 		JBrowse link
G Ankib1 ankyrin repeat and IBR domain containing 1 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936803:1,393,918...1,423,086
Ensembl chrNW_004936803:1,393,954...1,423,068 		JBrowse link
G Arih1 ariadne RBR E3 ubiquitin protein ligase 1 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936471:31,822,592...31,947,624
Ensembl chrNW_004936471:31,822,592...31,947,624 		JBrowse link
G Arih2 ariadne RBR E3 ubiquitin protein ligase 2 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936529:648,661...713,616
Ensembl chrNW_004936529:648,675...713,675 		JBrowse link
G Atg7 autophagy related 7 acts_upstream_of_or_within ISO (PMID:23152632) MGI PMID:23152632 NCBI chrNW_004936602:1,938,720...2,179,239
Ensembl chrNW_004936602:1,935,507...2,179,256 		JBrowse link
G Aurka aurora kinase A acts_upstream_of_or_within ISO (PMID:17060449) MGI PMID:17060449 NCBI chrNW_004936875:295,238...310,457 JBrowse link
G Axin1 axin 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:16601693) Ensembl
MGI
TreeGrafter		 PMID:16601693 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936501:599,963...633,837
Ensembl chrNW_004936501:599,919...633,873 		JBrowse link
G Axin2 axin 2 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936541:7,155,963...7,242,466
Ensembl chrNW_004936541:7,211,985...7,242,470 		JBrowse link
G Bag2 BAG cochaperone 2 NOT|involved_in ISO (MGI:6148635|PMID:19228967) ARUK-UCL PMID:19228967 MGI:6148635 NCBI chrNW_004936476:4,131,159...4,142,357
Ensembl chrNW_004936476:4,129,013...4,142,357 		JBrowse link
G Bbs7 Bardet-Biedl syndrome 7 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:22302990) MGI
Ensembl		 PMID:22302990 GO_REF:0000107 NCBI chrNW_004936662:1,081,237...1,116,719
Ensembl chrNW_004936662:1,080,295...1,116,636 		JBrowse link
G Cbfa2t3 CBFA2/RUNX1 partner transcriptional co-repressor 3 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936641:857,483...875,527
Ensembl chrNW_004936641:810,074...875,534 		JBrowse link
G Chfr checkpoint with forkhead and ring finger domains involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:22285184) Ensembl
MGI		 PMID:22285184 GO_REF:0000107 NCBI chrNW_004936660:2,725,019...2,754,564
Ensembl chrNW_004936660:2,724,989...2,754,586 		JBrowse link
G Clu clusterin involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936675:499,745...513,515
Ensembl chrNW_004936675:499,199...513,836 		JBrowse link
G Cop1 COP1 E3 ubiquitin ligase involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936481:12,262,415...12,437,627
Ensembl chrNW_004936481:12,262,409...12,437,571 		JBrowse link
G Csnk1a1 casein kinase 1 alpha 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936504:5,351,354...5,394,856
Ensembl chrNW_004936504:5,351,029...5,396,034 		JBrowse link
G Csnk1d casein kinase 1 delta involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936594:5,720,887...5,743,206
Ensembl chrNW_004936594:5,724,406...5,743,180 		JBrowse link
G Dab2 DAB adaptor protein 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936518:2,915,819...2,936,474
Ensembl chrNW_004936518:2,915,764...2,937,875 		JBrowse link
G Dda1 DET1 and DDB1 associated 1 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936596:3,545,669...3,554,134
Ensembl chrNW_004936596:3,545,669...3,554,134 		JBrowse link
G Ddrgk1 DDRGK domain containing 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936485:15,516,348...15,526,380
Ensembl chrNW_004936485:15,516,302...15,526,376 		JBrowse link
G Det1 DET1 partner of COP1 E3 ubiquitin ligase involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936483:14,535,771...14,556,236
Ensembl chrNW_004936483:14,535,800...14,556,248 		JBrowse link
G Dnajb2 DnaJ heat shock protein family (Hsp40) member B2 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936569:1,689,926...1,697,179
Ensembl chrNW_004936569:1,689,507...1,698,954 		JBrowse link
G Dvl1 dishevelled segment polarity protein 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936737:1,797,348...1,811,043
Ensembl chrNW_004936737:1,797,326...1,810,286 		JBrowse link
G Fbxo22 F-box protein 22 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:19319192) Ensembl
MGI
TreeGrafter		 PMID:19319192 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936471:36,232,749...36,255,772
Ensembl chrNW_004936471:36,232,583...36,255,672 		JBrowse link
G Fbxw8 F-box and WD repeat domain containing 8 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936558:5,423,815...5,523,649
Ensembl chrNW_004936558:5,421,976...5,523,676 		JBrowse link
G Gabarap GABA type A receptor-associated protein involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936595:534,042...536,289
Ensembl chrNW_004936595:533,977...536,271 		JBrowse link
G Gba1 glucosylceramidase beta 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (MGI:5501380|PMID:23707074) Ensembl
ParkinsonsUK-UCL		 PMID:23707074 GO_REF:0000107 MGI:5501380 NCBI chrNW_004936580:4,715,869...4,720,752
Ensembl chrNW_004936580:4,715,408...4,720,798 		JBrowse link
G Gclc glutamate-cysteine ligase catalytic subunit involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:17189825) Ensembl
MGI		 PMID:17189825 GO_REF:0000107 NCBI chrNW_004936476:7,371,270...7,418,756
Ensembl chrNW_004936476:7,371,149...7,418,958 		JBrowse link
G Gsk3a glycogen synthase kinase 3 alpha involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936706:266,462...277,256
Ensembl chrNW_004936706:269,126...277,256 		JBrowse link
G Gsk3b glycogen synthase kinase 3 beta involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:22660580) Ensembl
MGI		 PMID:22660580 GO_REF:0000107 NCBI chrNW_004936536:6,730,070...6,893,818
Ensembl chrNW_004936536:6,730,062...6,894,303 		JBrowse link
G Hspbp1 HSPA (Hsp70) binding protein 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936886:526,334...541,931
Ensembl chrNW_004936886:526,287...542,606 		JBrowse link
G Il33 interleukin 33 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:22660580) Ensembl
MGI		 PMID:22660580 GO_REF:0000107 NCBI chrNW_004936539:763,755...791,461
Ensembl chrNW_004936539:623,248...791,470 		JBrowse link
G Klhl40 kelch like family member 40 involved_in ISO (MGI:5700633|PMID:25940086) UniProt PMID:25940086 MGI:5700633 NCBI chrNW_004936695:2,417,938...2,424,622
Ensembl chrNW_004936695:2,414,573...2,424,702 		JBrowse link
G LOC101955831 heat shock 70 kDa protein 1 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936727:1,718,952...1,721,691 JBrowse link
G LOC101956126 heat shock 70 kDa protein 1 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936727:1,732,323...1,735,128 JBrowse link
G LOC101967743 casein kinase I involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936492:2,904,622...2,925,904
Ensembl chrNW_004936492:2,907,015...2,928,418 		JBrowse link
G LOC101969625 DET1 homolog involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936677:2,971,964...2,973,437 JBrowse link
G Lrrk2 leucine rich repeat kinase 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936607:628,469...761,117
Ensembl chrNW_004936607:626,991...761,123 		JBrowse link
G Mapk8 mitogen-activated protein kinase 8 involved_in ISO (MGI:6148490|PMID:29153991) UniProt PMID:29153991 MGI:6148490 NCBI chrNW_004936728:1,775,746...1,893,895
Ensembl chrNW_004936728:1,775,641...1,893,907 		JBrowse link
G Mapk9 mitogen-activated protein kinase 9 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936739:551,678...602,027
Ensembl chrNW_004936739:551,629...602,047 		JBrowse link
G Mdm2 MDM2 proto-oncogene involved_in ISO (PMID:11278372) BHF-UCL PMID:11278372 NCBI chrNW_004936545:6,709,903...6,732,334 JBrowse link
G Nkd2 NKD inhibitor of WNT signaling pathway 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936815:669,389...701,402
Ensembl chrNW_004936815:669,389...701,402 		JBrowse link
G Nop53 NOP53 ribosome biogenesis factor involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936664:1,334,487...1,343,867
Ensembl chrNW_004936664:1,334,510...1,342,321 		JBrowse link
G Nub1 negative regulator of ubiquitin like proteins 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936527:6,726,363...6,756,445
Ensembl chrNW_004936527:6,726,357...6,755,318 		JBrowse link
G Pabir1 PP2A Aalpha (PPP2R1A) and B55A (PPP2R2A) interacting phosphatase regulator 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936503:5,095,986...5,097,274
Ensembl chrNW_004936503:5,096,112...5,096,963 		JBrowse link
G Pias1 protein inhibitor of activated STAT 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936471:27,925,153...28,055,632
Ensembl chrNW_004936471:27,925,153...28,055,632 		JBrowse link
G Plk1 polo like kinase 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936501:8,321,415...8,332,414
Ensembl chrNW_004936501:8,321,305...8,332,424 		JBrowse link
G Plk2 polo like kinase 2 ISO RGD PMID:18723513 RGD:7241135 NCBI chrNW_004936480:9,680,461...9,686,593
Ensembl chrNW_004936480:9,680,449...9,686,595 		JBrowse link
G Prickle1 prickle planar cell polarity protein 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936512:1,165,159...1,270,138
Ensembl chrNW_004936512:1,163,615...1,270,255 		JBrowse link
G Prkn parkin RBR E3 ubiquitin protein ligase involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936489:12,118,538...12,913,664
Ensembl chrNW_004936489:12,120,678...13,327,872 		JBrowse link
G Psen1 presenilin 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936488:2,464,623...2,528,807
Ensembl chrNW_004936488:2,464,527...2,530,065 		JBrowse link
G Psen2 presenilin 2 involved_in ISO (MGI:4887523|PMID:20208556) BHF-UCL PMID:20208556 MGI:4887523 NCBI chrNW_004936526:3,584,194...3,611,719
Ensembl chrNW_004936526:3,584,188...3,614,074 		JBrowse link
G Psmd10 proteasome 26S subunit, non-ATPase 10 involved_in ISO (PMID:16023600) UniProt PMID:16023600 NCBI chrNW_004936499:6,691,758...6,698,515
Ensembl chrNW_004936499:6,691,476...6,702,986 		JBrowse link
G Rack1 receptor for activated C kinase 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936826:748,256...753,460
Ensembl chrNW_004936826:747,291...753,442 		JBrowse link
G Rad23a RAD23 homolog A, nucleotide excision repair protein involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936659:2,001,356...2,007,520
Ensembl chrNW_004936659:2,001,301...2,010,215 		JBrowse link
G Rbx1 ring-box 1 involved_in ISO (PMID:14739464) UniProt PMID:14739464 NCBI chrNW_004936492:872,316...890,860
Ensembl chrNW_004936492:873,576...890,835 		JBrowse link
G Rchy1 ring finger and CHY zinc finger domain containing 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936598:436,559...453,137
Ensembl chrNW_004936598:436,260...453,137 		JBrowse link
G Rnf14 ring finger protein 14 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936504:12,200,395...12,217,454
Ensembl chrNW_004936504:12,200,388...12,217,518 		JBrowse link
G Rnf144a ring finger protein 144A involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936532:3,969,108...4,047,022
Ensembl chrNW_004936532:3,969,081...4,046,976 		JBrowse link
G Rnf144b ring finger protein 144B involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936552:4,080,675...4,165,882
Ensembl chrNW_004936552:4,083,483...4,166,890 		JBrowse link
G Rnf180 ring finger protein 180 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:18363970), (PMID:23926250) Ensembl
MGI
TreeGrafter		 PMID:18363970 PMID:23926250 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936480:4,809,103...4,834,977
Ensembl chrNW_004936480:4,659,751...4,834,972 		JBrowse link
G Rnf19a ring finger protein 19A, RBR E3 ubiquitin protein ligase involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936470:42,965,790...43,007,487
Ensembl chrNW_004936470:42,965,284...43,007,487 		JBrowse link
G Rnf19b ring finger protein 19B involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936474:15,827,800...15,850,405
Ensembl chrNW_004936474:15,827,303...15,849,632 		JBrowse link
G Sh3rf1 SH3 domain containing ring finger 1 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936516:1,267,128...1,429,040
Ensembl chrNW_004936516:1,267,029...1,428,841 		JBrowse link
G Sh3rf2 SH3 domain containing ring finger 2 involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936504:8,602,116...8,731,099
Ensembl chrNW_004936504:8,599,157...8,731,118 		JBrowse link
G Sh3rf3 SH3 domain containing ring finger 3 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936829:714,518...914,894
Ensembl chrNW_004936829:826,762...956,056 		JBrowse link
G Sirt2 sirtuin 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936661:1,828,868...1,849,892
Ensembl chrNW_004936661:1,828,831...1,850,000 		JBrowse link
G Sirt6 sirtuin 6 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936588:2,387,162...2,394,066
Ensembl chrNW_004936588:2,386,977...2,394,096 		JBrowse link
G Socs4 suppressor of cytokine signaling 4 involved_in IEA InterPro GO_REF:0000002 NCBI chrNW_004936697:110,637...129,767
Ensembl chrNW_004936697:110,952...129,686 		JBrowse link
G Socs5 suppressor of cytokine signaling 5 involved_in IEA Ensembl
InterPro		 GO_REF:0000002 GO_REF:0000107 NCBI chrNW_004936508:5,531,002...5,588,022
Ensembl chrNW_004936508:5,531,002...5,587,549 		JBrowse link
G Stub1 STIP1 homology and U-box containing protein 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936501:328,767...330,963
Ensembl chrNW_004936501:326,451...330,983 		JBrowse link
G Sumo1 small ubiquitin like modifier 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936726:1,402,977...1,413,974
Ensembl chrNW_004936726:1,399,050...1,429,205 		JBrowse link
G Sumo2 small ubiquitin like modifier 2 involved_in ISO (PMID:18408734) UniProt PMID:18408734 NCBI chrNW_004936594:469,616...484,375 JBrowse link
G Taf1 TATA-box binding protein associated factor 1 involved_in ISO (PMID:15053879) BHF-UCL PMID:15053879 NCBI chrNW_004936762:189,710...271,759 JBrowse link
G Trib1 tribbles pseudokinase 1 involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936470:22,401,713...22,408,808
Ensembl chrNW_004936470:22,401,379...22,409,490 		JBrowse link
G Trib2 tribbles pseudokinase 2 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936532:8,354,205...8,377,924 JBrowse link
G Trib3 tribbles pseudokinase 3 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936485:18,077,850...18,082,817
Ensembl chrNW_004936485:18,077,850...18,083,553 		JBrowse link
G Ube2v2 ubiquitin conjugating enzyme E2 V2 ISO RGD PMID:12750002 RGD:1299567 NCBI chrNW_004936590:4,637,858...4,670,789
Ensembl chrNW_004936590:4,637,065...4,670,827 		JBrowse link
G Usp5 ubiquitin specific peptidase 5 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936709:952,225...966,429
Ensembl chrNW_004936709:952,182...966,498 		JBrowse link
G Vcp valosin containing protein involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936524:3,085,959...3,102,461
Ensembl chrNW_004936524:3,085,500...3,102,466 		JBrowse link
G Zer1 zyg-11 related cell cycle regulator involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936487:16,210,738...16,239,686
Ensembl chrNW_004936487:16,210,707...16,239,660 		JBrowse link
G Zfand2a zinc finger AN1-type containing 2A involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:16973439) Ensembl
MGI		 PMID:16973439 GO_REF:0000107 NCBI chrNW_004936754:1,353,482...1,363,651
Ensembl chrNW_004936754:1,353,342...1,363,720 		JBrowse link
G Zyg11b zyg-11 family member B, cell cycle regulator involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936522:8,197,557...8,266,061
Ensembl chrNW_004936522:8,198,098...8,266,109 		JBrowse link
positive regulation of proteasomal ubiquitin-dependent protein catabolic process involved in cellular response to hypoxia term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Plk3 polo like kinase 3 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936474:26,026,878...26,032,098
Ensembl chrNW_004936474:26,026,842...26,032,218 		JBrowse link
positive regulation of protein catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Amer1 APC membrane recruitment protein 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936635:3,465,473...3,482,311
Ensembl chrNW_004936635:3,478,598...3,482,008 		JBrowse link
G Apc APC regulator of WNT signaling pathway involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:16478791)
(PMID:12952940)		 Ensembl
MGI
TreeGrafter		 PMID:12952940 PMID:16478791 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936531:6,899,580...7,019,016
Ensembl chrNW_004936531:6,899,788...7,019,453 		JBrowse link
G Apc2 APC regulator of WNT signaling pathway 2 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936588:767,115...787,321
Ensembl chrNW_004936588:767,066...786,951 		JBrowse link
G Asb11 ankyrin repeat and SOCS box containing 11 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936470:4,701,670...4,728,527
Ensembl chrNW_004936470:4,701,681...4,728,555 		JBrowse link
G Asb13 ankyrin repeat and SOCS box containing 13 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936484:8,855,456...8,873,940
Ensembl chrNW_004936484:8,855,399...8,875,018 		JBrowse link
G Asb5 ankyrin repeat and SOCS box containing 5 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936516:6,811,144...6,903,258
Ensembl chrNW_004936516:6,811,130...6,903,045 		JBrowse link
G Asb9 ankyrin repeat and SOCS box containing 9 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:17148442) MGI
TreeGrafter
Ensembl		 PMID:17148442 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936470:4,660,417...4,692,175
Ensembl chrNW_004936470:4,660,443...4,692,173 		JBrowse link
G Atg4b autophagy related 4B cysteine peptidase ISO RGD PMID:16874114 RGD:2301238 NCBI chrNW_004936745:291,311...308,469
Ensembl chrNW_004936745:292,746...307,746 		JBrowse link
G Atg7 autophagy related 7 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936602:1,938,720...2,179,239
Ensembl chrNW_004936602:1,935,507...2,179,256 		JBrowse link
G Axin1 axin 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936501:599,963...633,837
Ensembl chrNW_004936501:599,919...633,873 		JBrowse link
G C4bpb complement component 4 binding protein beta involved_in ISO (PMID:22333221) BHF-UCL PMID:22333221 NCBI chrNW_004936557:5,546,692...5,561,531 JBrowse link
G Cblb Cbl proto-oncogene B involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:14973438) Ensembl
MGI		 PMID:14973438 GO_REF:0000107 NCBI chrNW_004936701:1,157,790...1,353,375
Ensembl chrNW_004936701:1,157,797...1,353,388 		JBrowse link
G Cdkn1b cyclin dependent kinase inhibitor 1B acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:19056892) MGI
Ensembl		 PMID:19056892 GO_REF:0000107 NCBI chrNW_004936587:4,573,166...4,578,480
Ensembl chrNW_004936587:4,572,728...4,578,461 		JBrowse link
G Crebrf CREB3 regulatory factor involved_in ISO (PMID:18391022) UniProt PMID:18391022 NCBI chrNW_004936609:2,460,379...2,498,614
Ensembl chrNW_004936609:2,449,601...2,498,661 		JBrowse link
G Csnk2a1 casein kinase 2 alpha 1 involved_in ISO (PMID:20625391) UniProt PMID:20625391 NCBI chrNW_004936485:17,966,993...18,021,191 JBrowse link
G Cul4a cullin 4A involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936472:409,083...432,442
Ensembl chrNW_004936472:408,659...432,379 		JBrowse link
G Cul4b cullin 4B involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:18602923) Ensembl
MGI		 PMID:18602923 GO_REF:0000107 NCBI chrNW_004936479:9,490,717...9,535,998
Ensembl chrNW_004936479:9,479,133...9,534,262 		JBrowse link
G Dab2ip DAB2 interacting protein involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936487:10,056,809...10,243,021
Ensembl chrNW_004936487:10,145,278...10,243,174 		JBrowse link
G Dact1 dishevelled binding antagonist of beta catenin 1 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:16446366) MGI
Ensembl		 PMID:16446366 GO_REF:0000107 NCBI chrNW_004936495:3,017,029...3,026,759
Ensembl chrNW_004936495:3,017,150...3,025,684 		JBrowse link
G Dcaf1 DDB1 and CUL4 associated factor 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936529:2,786,252...2,856,516
Ensembl chrNW_004936529:2,786,252...2,856,967 		JBrowse link
G Ddb1 damage specific DNA binding protein 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936581:1,710,382...1,742,598
Ensembl chrNW_004936581:1,710,382...1,742,598 		JBrowse link
G Dtl denticleless E3 ubiquitin protein ligase homolog involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936557:1,347,991...1,389,836
Ensembl chrNW_004936557:1,347,991...1,389,836 		JBrowse link
G Egln2 egl-9 family hypoxia inducible factor 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936661:3,061,391...3,070,219
Ensembl chrNW_004936661:3,061,308...3,070,192 		JBrowse link
G Ezr ezrin involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936489:10,413,374...10,457,771
Ensembl chrNW_004936489:10,412,710...10,458,201 		JBrowse link
G Faf1 Fas associated factor 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936522:9,774,943...10,160,987
Ensembl chrNW_004936522:9,784,203...10,161,774 		JBrowse link
G Fbxl5 F-box and leucine rich repeat protein 5 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:21907140) Ensembl
MGI		 PMID:21907140 GO_REF:0000107 NCBI chrNW_004936477:12,279,521...12,312,927
Ensembl chrNW_004936477:12,279,541...12,313,007 		JBrowse link
G Fbxo11 F-box protein 11 ISO RGD PMID:32988261 RGD:152176655 NCBI chrNW_004936508:4,622,695...4,708,694
Ensembl chrNW_004936508:4,685,595...4,708,694 		JBrowse link
G Foxo1 forkhead box O1 involved_in IEA
ISS		 Ensembl
UniProt		 GO_REF:0000024 GO_REF:0000107 NCBI chrNW_004936565:5,210,014...5,299,213
Ensembl chrNW_004936565:5,210,014...5,302,436 		JBrowse link
G Gga1 golgi associated, gamma adaptin ear containing, ARF binding protein 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:22836275) Ensembl
MGI		 PMID:22836275 GO_REF:0000107 NCBI chrNW_004936492:3,445,271...3,464,960
Ensembl chrNW_004936492:3,445,094...3,464,809 		JBrowse link
G Gga3 golgi associated, gamma adaptin ear containing, ARF binding protein 3 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:22836275) Ensembl
MGI		 PMID:22836275 GO_REF:0000107 NCBI chrNW_004936594:531,844...548,487
Ensembl chrNW_004936594:532,342...548,440 		JBrowse link
G Gja1 gap junction protein alpha 1 ISO RGD PMID:12952975 RGD:1582696 NCBI chrNW_004936658:3,920,043...3,932,987
Ensembl chrNW_004936658:3,920,043...3,932,987 		JBrowse link
G Gpc3 glypican 3 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:18477453) Ensembl
MGI		 PMID:18477453 GO_REF:0000107 NCBI chrNW_004936691:1,060,013...1,459,736
Ensembl chrNW_004936691:1,059,994...1,459,740 		JBrowse link
G Gsk3b glycogen synthase kinase 3 beta ISO RGD PMID:17686886 RGD:10045647 NCBI chrNW_004936536:6,730,070...6,893,818
Ensembl chrNW_004936536:6,730,062...6,894,303 		JBrowse link
G Hamp hepcidin antimicrobial peptide involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:21700773) Ensembl
MGI		 PMID:21700773 GO_REF:0000107 NCBI chrNW_004936570:1,009,344...1,010,654
Ensembl chrNW_004936570:1,009,312...1,010,686 		JBrowse link
G Hsp90aa1 heat shock protein 90 alpha family class A member 1 involved_in ISO (PMID:18292230) ARUK-UCL PMID:18292230 NCBI chrNW_004936835:316,767...321,999
Ensembl chrNW_004936835:316,767...321,990 		JBrowse link
G Ier3 immediate early response 3 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:19096392) Ensembl
MGI		 PMID:19096392 GO_REF:0000107 NCBI chrNW_004936837:401,475...402,769
Ensembl chrNW_004936837:401,524...402,741 		JBrowse link
G Itch itchy E3 ubiquitin protein ligase involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:14973438) Ensembl
MGI		 PMID:14973438 GO_REF:0000107 NCBI chrNW_004936561:6,140,236...6,265,734
Ensembl chrNW_004936561:6,140,234...6,265,767 		JBrowse link
G LOC101973539 C4b-binding protein alpha chain involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936557:5,511,372...5,535,158
Ensembl chrNW_004936557:5,511,320...5,542,713 		JBrowse link
G LOC101977665 tumor necrosis factor ligand superfamily member 12 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:17389268) MGI
Ensembl		 PMID:17389268 GO_REF:0000107 NCBI chrNW_004936595:831,252...839,783
Ensembl chrNW_004936595:830,466...839,748 		JBrowse link
G Lpcat1 lysophosphatidylcholine acyltransferase 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:20018880) Ensembl
MGI		 PMID:20018880 GO_REF:0000107 NCBI chrNW_004936815:281,664...345,915
Ensembl chrNW_004936815:292,200...344,413 		JBrowse link
G Mapk15 mitogen-activated protein kinase 15 ISO Human Estrogen Receptor alpha RGD PMID:12917323 RGD:2304230 NCBI chrNW_004936470:8,420,850...8,425,996
Ensembl chrNW_004936470:8,420,732...8,425,884 		JBrowse link
G Msn moesin involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936635:2,390,390...2,461,870
Ensembl chrNW_004936635:2,389,823...2,461,930 		JBrowse link
G Mylip myosin regulatory light chain interacting protein involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936552:2,325,161...2,341,356
Ensembl chrNW_004936552:2,325,378...2,339,867 		JBrowse link
G Ndfip1 Nedd4 family interacting protein 1 acts_upstream_of_or_within ISO (PMID:17137798) MGI PMID:17137798 NCBI chrNW_004936504:12,053,470...12,103,346 JBrowse link
G Ndufa13 NADH:ubiquinone oxidoreductase subunit A13 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936596:1,946,058...1,953,734
Ensembl chrNW_004936596:1,946,111...1,953,698 		JBrowse link
G Nedd4 NEDD4 E3 ubiquitin protein ligase acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:14973438)
(PMID:11748237)		 MGI
Ensembl		 PMID:11748237 PMID:14973438 GO_REF:0000107 NCBI chrNW_004936471:17,254,777...17,374,725
Ensembl chrNW_004936471:17,252,234...17,374,804 		JBrowse link
G Nedd4l NEDD4 like E3 ubiquitin protein ligase ISO RGD PMID:18174164 RGD:6893331 NCBI chrNW_004936497:6,106,284...6,318,339
Ensembl chrNW_004936497:6,106,268...6,318,354 		JBrowse link
G Nkd1 NKD inhibitor of WNT signaling pathway 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936475:3,559,754...3,655,216
Ensembl chrNW_004936475:3,579,501...3,655,205 		JBrowse link
G Nsf N-ethylmaleimide sensitive factor, vesicle fusing ATPase involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936541:1,989,092...2,137,006
Ensembl chrNW_004936541:1,987,326...2,137,067 		JBrowse link
G Oaz1 ornithine decarboxylase antizyme 1 involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936588:1,356,769...1,361,037
Ensembl chrNW_004936588:1,356,769...1,361,037 		JBrowse link
G Oaz2 ornithine decarboxylase antizyme 2 involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936471:25,069,035...25,081,640
Ensembl chrNW_004936471:25,070,127...25,081,431 		JBrowse link
G Oaz3 ornithine decarboxylase antizyme 3 involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936580:1,963,372...1,966,086
Ensembl chrNW_004936580:1,963,415...1,965,950 		JBrowse link
G Plk2 polo like kinase 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936480:9,680,461...9,686,593
Ensembl chrNW_004936480:9,680,449...9,686,595 		JBrowse link
G Ppp2r3a protein phosphatase 2 regulatory subunit B''alpha involved_in ISO (PMID:15687260) BHF-UCL PMID:15687260 NCBI chrNW_004936529:8,885,803...9,034,217
Ensembl chrNW_004936529:8,920,243...9,033,865 		JBrowse link
G Rab7a RAB7A, member RAS oncogene family involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936798:297,600...304,929
Ensembl chrNW_004936798:296,066...305,176 		JBrowse link
G Rbx1 ring-box 1 involved_in ISO (PMID:11027288), (PMID:16482215), (PMID:27626656) UniProt PMID:11027288 PMID:16482215 PMID:27626656 NCBI chrNW_004936492:872,316...890,860
Ensembl chrNW_004936492:873,576...890,835 		JBrowse link
G Rdx radixin involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936612:3,992,542...4,060,598
Ensembl chrNW_004936612:3,992,542...4,040,315 		JBrowse link
G Rhbdd1 rhomboid domain containing 1 involved_in ISO (PMID:18953687)
(PMID:22624035)		 UniProt PMID:18953687 PMID:22624035 NCBI chrNW_004936525:8,906,848...9,028,792
Ensembl chrNW_004936525:8,906,631...9,004,372 		JBrowse link
G Rhbdd3 rhomboid domain containing 3 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:23610400) Ensembl
MGI		 PMID:23610400 GO_REF:0000107 NCBI chrNW_004936657:3,290,684...3,296,352
Ensembl chrNW_004936657:3,290,574...3,296,705 		JBrowse link
G Rilp Rab interacting lysosomal protein involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936538:7,775,942...7,779,563
Ensembl chrNW_004936538:7,775,942...7,779,365 		JBrowse link
G Rnf41 ring finger protein 41 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936646:605,302...630,645
Ensembl chrNW_004936646:605,302...631,022 		JBrowse link
G Sec22b SEC22 homolog B, vesicle trafficking protein involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936872:294,116...313,893
Ensembl chrNW_004936872:294,066...313,293 		JBrowse link
G Sgsm3 small G protein signaling modulator 3 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936492:1,380,322...1,416,060
Ensembl chrNW_004936492:1,385,347...1,416,124 		JBrowse link
G Snf8 SNF8 subunit of ESCRT-II involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936490:12,507,147...12,520,424
Ensembl chrNW_004936490:12,507,116...12,523,674 		JBrowse link
G Snx1 sorting nexin 1 ISO RGD PMID:11110793 RGD:68866 NCBI chrNW_004936471:24,569,677...24,617,016
Ensembl chrNW_004936471:24,569,609...24,619,826 		JBrowse link
G Sorl1 sortilin related receptor 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936542:6,192,407...6,352,835
Ensembl chrNW_004936542:6,192,407...6,352,424 		JBrowse link
G Sox17 SRY-box transcription factor 17 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936496:1,248,582...1,251,406
Ensembl chrNW_004936496:1,248,577...1,251,430 		JBrowse link
G Sox9 SRY-box transcription factor 9 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:19047045) Ensembl
MGI		 PMID:19047045 GO_REF:0000107 NCBI chrNW_004936655:1,849,044...1,852,648
Ensembl chrNW_004936655:1,847,272...1,852,705 		JBrowse link
G Stx5 syntaxin 5 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936581:462,417...487,563
Ensembl chrNW_004936581:462,969...487,578 		JBrowse link
G Tiparp TCDD inducible poly(ADP-ribose) polymerase acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:23275542) MGI
Ensembl		 PMID:23275542 GO_REF:0000107 NCBI chrNW_004936519:3,683,972...3,712,081
Ensembl chrNW_004936519:3,684,515...3,712,081 		JBrowse link
G Tnf tumor necrosis factor involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936727:1,936,066...1,937,766
Ensembl chrNW_004936727:1,936,066...1,937,766 		JBrowse link
G Tnfaip3 TNF alpha induced protein 3 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:18952128) Ensembl
MGI		 PMID:18952128 GO_REF:0000107 NCBI chrNW_004936560:5,124,955...5,138,988
Ensembl chrNW_004936560:5,128,843...5,138,345 		JBrowse link
G Trim32 tripartite motif containing 32 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:16243356) Ensembl
MGI		 PMID:16243356 GO_REF:0000107 NCBI chrNW_004936487:5,606,690...5,619,856
Ensembl chrNW_004936487:5,606,693...5,619,856 		JBrowse link
G Ubr3 ubiquitin protein ligase E3 component n-recognin 3 ISO RGD PMID:32988261 RGD:152176655 NCBI chrNW_004936509:325,277...537,423
Ensembl chrNW_004936509:324,953...535,141 		JBrowse link
G Ubxn2a UBX domain protein 2A involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936493:7,969,271...7,978,537
Ensembl chrNW_004936493:7,971,960...7,985,314 		JBrowse link
G Vcp valosin containing protein involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936524:3,085,959...3,102,461
Ensembl chrNW_004936524:3,085,500...3,102,466 		JBrowse link
G Vgll4 vestigial like family member 4 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936602:1,789,479...1,938,440
Ensembl chrNW_004936602:1,815,313...1,936,031 		JBrowse link
G Vip vasoactive intestinal peptide involved_in IEA Ensembl
TreeGrafter
UniProt		 GO_REF:0000107 GO_REF:0000117 GO_REF:0000118 NCBI chrNW_004936489:5,425,778...5,434,483
Ensembl chrNW_004936489:5,425,726...5,434,785 		JBrowse link
G Vps11 VPS11 core subunit of CORVET and HOPS complexes involved_in ISO (PMID:21148287) UniProt PMID:21148287 NCBI chrNW_004936542:4,022,928...4,035,577
Ensembl chrNW_004936542:4,023,134...4,035,260 		JBrowse link
G Vps28 VPS28 subunit of ESCRT-I involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936470:7,829,207...7,833,213
Ensembl chrNW_004936470:7,830,114...7,833,047 		JBrowse link
G Vps35 VPS35 retromer complex component involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936475:50,476...77,797
Ensembl chrNW_004936475:50,321...78,097 		JBrowse link
G Wnt5a Wnt family member 5A involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:12952940) Ensembl
MGI		 PMID:12952940 GO_REF:0000107 NCBI chrNW_004936473:6,031,627...6,052,211
Ensembl chrNW_004936473:6,029,976...6,052,159 		JBrowse link
positive regulation of protein catabolic process in the vacuole term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cd81 CD81 molecule involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936794:664,089...670,294
Ensembl chrNW_004936794:664,115...669,800 		JBrowse link
regulation of chaperone-mediated autophagy term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gfap glial fibrillary acidic protein involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936541:1,265,915...1,275,232
Ensembl chrNW_004936541:1,265,436...1,275,296 		JBrowse link
regulation of ERAD pathway term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Herpud1 homocysteine inducible ER protein with ubiquitin like domain 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936475:9,091,115...9,102,101
Ensembl chrNW_004936475:9,091,176...9,102,109 		JBrowse link
G Usp19 ubiquitin specific peptidase 19 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936529:814,649...826,008
Ensembl chrNW_004936529:813,951...826,014 		JBrowse link
regulation of low-density lipoprotein particle receptor catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Mylip myosin regulatory light chain interacting protein involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936552:2,325,161...2,341,356
Ensembl chrNW_004936552:2,325,378...2,339,867 		JBrowse link
G Pcsk9 proprotein convertase subtilisin/kexin type 9 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:15805190)
(PMID:15741654)		 Ensembl
MGI		 PMID:15741654 PMID:15805190 GO_REF:0000107 NCBI chrNW_004936522:6,271,339...6,300,202
Ensembl chrNW_004936522:6,272,507...6,299,917 		JBrowse link
regulation of lysosomal protein catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Atp13a2 ATPase cation transporting 13A2 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936474:3,968,216...3,980,821
Ensembl chrNW_004936474:3,968,506...3,980,815 		JBrowse link
G Mfsd8 major facilitator superfamily domain containing 8 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:29514215) Ensembl
MGI		 PMID:29514215 GO_REF:0000107 NCBI chrNW_004936642:2,745,889...2,833,286
Ensembl chrNW_004936642:2,801,908...2,832,830 		JBrowse link
regulation of membrane protein ectodomain proteolysis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Tspan15 tetraspanin 15 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936521:8,981,691...9,022,336
Ensembl chrNW_004936521:8,979,541...9,022,387 		JBrowse link
G Tspan17 tetraspanin 17 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936597:901,729...913,847
Ensembl chrNW_004936597:901,723...911,704 		JBrowse link
G Tspan5 tetraspanin 5 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936717:49,797...217,567
Ensembl chrNW_004936717:49,752...217,654 		JBrowse link
regulation of proteasomal protein catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Apoe apolipoprotein E involved_in ISO (PMID:28111074) UniProt PMID:28111074 NCBI chrNW_004936706:1,512,438...1,516,805 JBrowse link
G Btrc beta-transducin repeat containing E3 ubiquitin protein ligase involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:19103752) Ensembl
MGI		 PMID:19103752 GO_REF:0000107 NCBI chrNW_004936600:4,215,219...4,424,498
Ensembl chrNW_004936600:4,213,956...4,397,987 		JBrowse link
G Dlgap1 DLG associated protein 1 involved_in ISO PMID:15496675 BHF-UCL PMID:15496675 RGD:8553458 NCBI chrNW_004936672:610,020...1,094,718
Ensembl chrNW_004936672:731,858...1,091,462 		JBrowse link
G Dnaaf4 dynein axonemal assembly factor 4 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936471:16,911,575...16,960,521
Ensembl chrNW_004936471:16,912,155...16,960,468 		JBrowse link
G Epm2a EPM2A glucan phosphatase, laforin involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:27107699) Ensembl
MGI		 PMID:27107699 GO_REF:0000107 NCBI chrNW_004936625:761,013...819,826
Ensembl chrNW_004936625:738,124...821,566 		JBrowse link
G Gpx1 glutathione peroxidase 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936529:997,943...999,123
Ensembl chrNW_004936529:998,150...998,987 		JBrowse link
G Nfe2l1 NFE2 like bZIP transcription factor 1 acts_upstream_of_or_within ISO (PMID:27920251)
(PMID:29400713)		 MGI PMID:27920251 PMID:29400713 NCBI chrNW_004936490:13,265,269...13,279,164
Ensembl chrNW_004936490:13,266,347...13,279,206 		JBrowse link
G Nudt15 nudix hydrolase 15 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936565:1,380,981...1,389,908
Ensembl chrNW_004936565:1,381,655...1,389,048 		JBrowse link
G Pithd1 PITH domain containing 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:31915251) Ensembl
MGI		 PMID:31915251 GO_REF:0000107 NCBI chrNW_004936474:8,933,598...8,943,066
Ensembl chrNW_004936474:8,933,557...8,943,189 		JBrowse link
G Pkd1 polycystin 1, transient receptor potential channel interacting acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:23001567) MGI
Ensembl		 PMID:23001567 GO_REF:0000107 NCBI chrNW_004936694:1,923,383...1,958,160
Ensembl chrNW_004936694:1,930,621...1,957,179 		JBrowse link
G Prkaca protein kinase cAMP-activated catalytic subunit alpha involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936659:2,750,015...2,765,914
Ensembl chrNW_004936659:2,750,537...2,765,753 		JBrowse link
G Prkacb protein kinase cAMP-activated catalytic subunit beta involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936608:1,353,905...1,464,636
Ensembl chrNW_004936608:1,353,897...1,464,636 		JBrowse link
G Psmd14 proteasome 26S subunit, non-ATPase 14 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936469:17,494,137...17,601,045
Ensembl chrNW_004936469:17,494,134...17,601,045 		JBrowse link
G Psme1 proteasome activator subunit 1 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936722:405,491...408,277
Ensembl chrNW_004936722:403,112...408,473 		JBrowse link
G Psme2 proteasome activator subunit 2 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936722:398,406...401,987
Ensembl chrNW_004936722:397,876...402,167 		JBrowse link
G Psme3 proteasome activator subunit 3 involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936490:17,542,933...17,549,347
Ensembl chrNW_004936490:17,542,726...17,551,049 		JBrowse link
G Rhbdf1 rhomboid 5 homolog 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936501:802,728...810,375
Ensembl chrNW_004936501:803,005...813,367 		JBrowse link
G Tmf1 TATA element modulatory factor 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936603:1,577,519...1,602,022
Ensembl chrNW_004936603:1,577,486...1,602,250 		JBrowse link
G Ubb ubiquitin B acts_upstream_of_or_within ISO (PMID:17571083) MGI PMID:17571083 NCBI chrNW_004936821:241,981...243,304 JBrowse link
G Uchl5 ubiquitin C-terminal hydrolase L5 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936638:1,242,950...1,289,376
Ensembl chrNW_004936638:1,242,893...1,290,512 		JBrowse link
G Usp14 ubiquitin specific peptidase 14 involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936550:640,331...675,703
Ensembl chrNW_004936550:635,963...675,832 		JBrowse link
regulation of proteasomal ubiquitin-dependent protein catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Araf A-Raf proto-oncogene, serine/threonine kinase involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936502:13,323,365...13,335,003
Ensembl chrNW_004936502:13,323,355...13,335,224 		JBrowse link
G Commd1 copper metabolism domain containing 1 involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936491:7,247,160...7,421,039
Ensembl chrNW_004936491:7,247,140...7,420,921 		JBrowse link
G Dda1 DET1 and DDB1 associated 1 involved_in IEA InterPro GO_REF:0000002 NCBI chrNW_004936596:3,545,669...3,554,134
Ensembl chrNW_004936596:3,545,669...3,554,134 		JBrowse link
G Desi1 desumoylating isopeptidase 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936492:326,029...348,219
Ensembl chrNW_004936492:326,032...346,102 		JBrowse link
G Foxf2 forkhead box F2 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936633:2,538,209...2,543,649
Ensembl chrNW_004936633:2,536,970...2,543,765 		JBrowse link
G Glmn glomulin, FKBP associated protein acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:22405651) MGI
Ensembl		 PMID:22405651 GO_REF:0000107 NCBI chrNW_004936537:6,778,317...6,827,384
Ensembl chrNW_004936537:6,777,965...6,829,881 		JBrowse link
G Gna12 G protein subunit alpha 12 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936823:447,979...543,134
Ensembl chrNW_004936823:447,917...543,140 		JBrowse link
G Rad23a RAD23 homolog A, nucleotide excision repair protein involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936659:2,001,356...2,007,520
Ensembl chrNW_004936659:2,001,301...2,010,215 		JBrowse link
G Rad23b RAD23 homolog B, nucleotide excision repair protein involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936559:5,224,679...5,264,853
Ensembl chrNW_004936559:5,226,223...5,264,491 		JBrowse link
G Ube2k ubiquitin conjugating enzyme E2 K involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:18710920) Ensembl
MGI		 PMID:18710920 GO_REF:0000107 NCBI chrNW_004936482:7,244,972...7,323,263
Ensembl chrNW_004936482:7,244,967...7,323,266 		JBrowse link
G Ubqln4 ubiquilin 4 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936580:5,299,864...5,316,583
Ensembl chrNW_004936580:5,301,389...5,315,756 		JBrowse link
G Ufl1 UFM1 specific ligase 1 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:20228063) MGI
TreeGrafter
Ensembl		 PMID:20228063 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936699:1,131,385...1,163,310
Ensembl chrNW_004936699:1,129,344...1,163,530 		JBrowse link
G Wnt10b Wnt family member 10B involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:19056892) Ensembl
MGI		 PMID:19056892 GO_REF:0000107 NCBI chrNW_004936512:6,768,240...6,774,172
Ensembl chrNW_004936512:6,768,240...6,774,172 		JBrowse link
G Xpo1 exportin 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936491:6,921,753...6,962,062
Ensembl chrNW_004936491:6,921,319...6,962,343 		JBrowse link
regulation of protein catabolic process at postsynapse, modulating synaptic transmission term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cdh1 cadherin 1 involved_in ISO PMID:21186356 SynGO PMID:21186356 RGD:13702406 NCBI chrNW_004936475:18,990,529...19,065,954
Ensembl chrNW_004936475:18,990,474...19,067,203 		JBrowse link
G Fbxo2 F-box protein 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936474:521,235...526,151
Ensembl chrNW_004936474:521,123...526,959 		JBrowse link
G Nedd4 NEDD4 E3 ubiquitin protein ligase involved_in ISO PMID:21148011 SynGO PMID:21148011 RGD:13702142 NCBI chrNW_004936471:17,254,777...17,374,725
Ensembl chrNW_004936471:17,252,234...17,374,804 		JBrowse link
G Rnf19a ring finger protein 19A, RBR E3 ubiquitin protein ligase involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936470:42,965,790...43,007,487
Ensembl chrNW_004936470:42,965,284...43,007,487 		JBrowse link
G Usp8 ubiquitin specific peptidase 8 involved_in ISO PMID:25505317 SynGO PMID:25505317 RGD:11076799 NCBI chrNW_004936471:12,463,189...12,524,148
Ensembl chrNW_004936471:12,463,120...12,520,674 		JBrowse link
regulation of protein catabolic process at presynapse, modulating synaptic transmission term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Fbxl20 F-box and leucine rich repeat protein 20 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936490:14,521,037...14,623,741
Ensembl chrNW_004936490:14,521,037...14,623,108 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 15969
    metabolic process 9630
      regulation of metabolic process 5604
        regulation of catabolic process 996
          regulation of protein catabolic process 377
            negative regulation of protein catabolic process + 118
            positive regulation of protein catabolic process + 216
            regulation of PSII associated light-harvesting complex II catabolic process 0
            regulation of chaperone-mediated autophagy + 4
            regulation of elastin catabolic process + 0
            regulation of low-density lipoprotein particle receptor catabolic process + 6
            regulation of membrane protein ectodomain proteolysis + 26
            regulation of proteasomal protein catabolic process + 204
            regulation of protein catabolic process at postsynapse, modulating synaptic transmission 5
            regulation of protein catabolic process at presynapse, modulating synaptic transmission 1
            regulation of protein catabolic process in the vacuole + 11
Path 2
Term Annotations click to browse term
  biological_process 15969
    metabolic process 9630
      catabolic process 2385
        organic substance catabolic process 1989
          organonitrogen compound catabolic process 1345
            protein catabolic process 967
              regulation of protein catabolic process 377
                negative regulation of protein catabolic process + 118
                positive regulation of protein catabolic process + 216
                regulation of PSII associated light-harvesting complex II catabolic process 0
                regulation of chaperone-mediated autophagy + 4
                regulation of elastin catabolic process + 0
                regulation of low-density lipoprotein particle receptor catabolic process + 6
                regulation of membrane protein ectodomain proteolysis + 26
                regulation of proteasomal protein catabolic process + 204
                regulation of protein catabolic process at postsynapse, modulating synaptic transmission 5
                regulation of protein catabolic process at presynapse, modulating synaptic transmission 1
                regulation of protein catabolic process in the vacuole + 11
paths to the root