Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models   new Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources

ONTOLOGY REPORT - ANNOTATIONS

Term:telomeric DNA binding
go back to main search page
Accession:GO:0042162 term browser browse the term
Definition:Binding to a telomere, a specific structure at the end of a linear chromosome required for the integrity and maintenance of the end.
Synonyms:exact_synonym: telomere binding;   telomeric repeat binding


show annotations for term's descendants           Sort by:
telomeric DNA binding term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Acd ACD, shelterin complex subunit and telomerase recruitment factor enables ISO
IBA
IEA		 (PMID:23685356)
GO_REF:0000033
GO_REF:0000107
(MGI:5500098|PMID:23685356)		 RGD
GO_Central
Ensembl		 PMID:23685356 GO_REF:0000033 GO_REF:0000107 MGI:5500098 NCBI chr19:33,586,739...33,589,481
Ensembl chr19:33,586,745...33,589,461 		JBrowse link
G Ctc1 CST telomere replication complex component 1 enables ISO
IBA		 (PMID:19854130)
GO_REF:0000033		 RGD
GO_Central		 PMID:19854130 GO_REF:0000033 NCBI chr10:53,714,614...53,735,298
Ensembl chr10:53,714,644...53,735,298 		JBrowse link
G Hmbox1 homeobox containing 1 enables ISO (PMID:23685356)
(MGI:5500098|PMID:23685356)		 RGD PMID:23685356 MGI:5500098 NCBI chr15:39,067,805...39,200,633
Ensembl chr15:39,067,804...39,200,323 		JBrowse link
G Hnrnpd heterogeneous nuclear ribonucleoprotein D enables ISS
ISO		 GO_REF:0000024
(PMID:8321232)		 UniProt
RGD		 PMID:8321232 GO_REF:0000024 NCBI chr14:9,615,375...9,638,975
Ensembl chr14:9,615,479...9,633,786 		JBrowse link
G Kdm1a lysine demethylase 1A NOT|enables ISO (PMID:24529708) RGD PMID:24529708 NCBI chr 5:148,782,976...148,838,319
Ensembl chr 5:148,782,976...148,838,319 		JBrowse link
G Ncl nucleolin enables ISO
ISS
IEA		 (PMID:8321232)
GO_REF:0000024
GO_REF:0000107		 RGD
UniProt
Ensembl		 PMID:8321232 GO_REF:0000024 GO_REF:0000107 NCBI chr 9:86,999,588...87,008,112
Ensembl chr 9:86,998,019...87,008,136 		JBrowse link
G Pif1 PIF1 5'-to-3' DNA helicase enables ISO (PMID:16522649) RGD PMID:16522649 NCBI chr 8:66,110,641...66,120,202
Ensembl chr 8:66,111,072...66,120,200 		JBrowse link
G Pot1 protection of telomeres 1 enables ISO (MGI:4441108|PMID:19854130), (MGI:5500098|PMID:23685356)
(PMID:23685356), (PMID:27013236), (PMID:30586141), (PMID:35420632), (PMID:37140166)		 RGD PMID:19854130 PMID:23685356 PMID:27013236 PMID:30586141 PMID:35420632 More... MGI:4441108 MGI:5500098 NCBI chr 4:54,205,330...54,263,137
Ensembl chr 4:54,205,332...54,263,042 		JBrowse link
G Rpa2 replication protein A2 enables IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 5:144,976,789...144,989,445
Ensembl chr 5:144,976,748...144,987,350 		JBrowse link
G Smg1 SMG1, nonsense mediated mRNA decay associated PI3K related kinase enables ISO (PMID:17916692) RGD PMID:17916692 NCBI chr 1:172,441,892...172,543,667
Ensembl chr 1:172,444,936...172,543,698 		JBrowse link
G Smg5 SMG5 nonsense mediated mRNA decay factor enables ISO
IBA		 (PMID:17916692)
GO_REF:0000033		 RGD
GO_Central		 PMID:17916692 GO_REF:0000033 NCBI chr 2:173,804,987...173,832,102
Ensembl chr 2:173,805,019...173,832,102 		JBrowse link
G Smg5l1 Smg5 nonsense mediated mRNA decay factor like 1 enables IEA GO_REF:0000118 TreeGrafter GO_REF:0000118 NCBI chr 7:75,917,527...76,051,832
Ensembl chr 7:75,917,392...76,052,413 		JBrowse link
G Smg6 SMG6 nonsense mediated mRNA decay factor enables ISO
IBA		 (PMID:12699629), (PMID:17916692)
GO_REF:0000033		 RGD
GO_Central		 PMID:12699629 PMID:17916692 GO_REF:0000033 NCBI chr10:59,786,258...60,014,395
Ensembl chr10:59,786,258...60,014,395 		JBrowse link
G Smg7 SMG7 nonsense mediated mRNA decay factor enables ISO
IBA		 (PMID:17916692)
GO_REF:0000033		 RGD
GO_Central		 PMID:17916692 GO_REF:0000033 NCBI chr13:64,986,145...65,050,698
Ensembl chr13:64,987,434...65,050,582 		JBrowse link
G Stn1 STN1 subunit of CST complex enables ISO
IBA		 (PMID:19854130)
GO_REF:0000033
(MGI:4441108|PMID:19854130)		 RGD
GO_Central		 PMID:19854130 GO_REF:0000033 MGI:4441108 NCBI chr 1:246,391,311...246,429,844
Ensembl chr 1:246,395,613...246,429,531 		JBrowse link
G Telo2 telomere maintenance 2 enables IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr10:14,120,491...14,135,729
Ensembl chr10:14,120,818...14,135,698 		JBrowse link
G Ten1 TEN1 subunit of CST complex enables ISO
IBA		 (PMID:19854130)
GO_REF:0000033		 RGD
GO_Central		 PMID:19854130 GO_REF:0000033 NCBI chr10:101,431,328...101,455,105
Ensembl chr10:101,431,328...101,453,052 		JBrowse link
G Terf1 telomeric repeat binding factor 1 enables ISO (PMID:19265708), (PMID:19487455), (PMID:19854130), (PMID:23685356), (PMID:24415760)
(MGI:4441108|PMID:19854130), (MGI:5500098|PMID:23685356)
(PMID:9391075)
(PMID:9034193)		 RGD PMID:9034193 PMID:9391075 PMID:19265708 PMID:19487455 PMID:19854130 More... MGI:4441108 MGI:5500098 NCBI chr 5:3,443,103...3,472,377
Ensembl chr 5:3,443,106...3,472,340 		JBrowse link
G Terf2 telomeric repeat binding factor 2 enables ISO (PMID:19854130), (PMID:20655466), (PMID:23685356)
(MGI:5500098|PMID:23685356)		 RGD PMID:19854130 PMID:20655466 PMID:23685356 MGI:5500098 NCBI chr19:34,976,963...35,005,813
Ensembl chr19:34,977,471...35,005,819 		JBrowse link
G Terf2ip TERF2 interacting protein enables ISO
IBA
IEA		 (MGI:5500098|PMID:23685356)
GO_REF:0000033
GO_REF:0000118		 RGD
GO_Central
TreeGrafter		 PMID:23685356 GO_REF:0000033 GO_REF:0000118 MGI:5500098 NCBI chr19:39,976,965...39,984,055
Ensembl chr19:39,976,906...39,984,064 		JBrowse link
G Tert telomerase reverse transcriptase enables IBA
IEA		 GO_REF:0000033
GO_REF:0000118		 GO_Central
TreeGrafter		 GO_REF:0000033 GO_REF:0000118 NCBI chr 1:29,637,213...29,659,561
Ensembl chr 1:29,637,506...29,659,561 		JBrowse link
G Tinf2 TERF1 interacting nuclear factor 2 enables ISO
IBA		 (PMID:12768206), (PMID:23685356)
GO_REF:0000033
(MGI:5500098|PMID:23685356)		 RGD
GO_Central		 PMID:12768206 PMID:23685356 GO_REF:0000033 MGI:5500098 NCBI chr15:29,170,663...29,178,015
Ensembl chr15:29,170,652...29,176,984 		JBrowse link
G Tp53bp1 tumor protein p53 binding protein 1 enables ISO (PMID:17053789) RGD PMID:17053789 NCBI chr 3:108,166,574...108,270,229
Ensembl chr 3:108,169,980...108,269,822 		JBrowse link
G Upf1 UPF1, RNA helicase and ATPase enables ISO (PMID:17916692), (PMID:21829167) RGD PMID:17916692 PMID:21829167 NCBI chr16:19,076,594...19,097,365
Ensembl chr16:19,076,322...19,096,568 		JBrowse link
G Upf2 UPF2, regulator of nonsense mediated mRNA decay enables ISO (PMID:17916692) RGD PMID:17916692 NCBI chr17:72,224,575...72,335,896
Ensembl chr17:72,225,316...72,335,855 		JBrowse link
G Upf3a UPF3A, regulator of nonsense mediated mRNA decay enables ISO
IBA		 (PMID:17916692)
GO_REF:0000033		 RGD
GO_Central		 PMID:17916692 GO_REF:0000033 NCBI chr16:75,757,442...75,768,478
Ensembl chr16:75,757,441...75,769,345 		JBrowse link
G Xrcc5 X-ray repair cross complementing 5 enables ISO
IBA		 (PMID:10535943)
GO_REF:0000033		 RGD
GO_Central		 PMID:10535943 GO_REF:0000033 NCBI chr 9:73,955,216...74,044,020
Ensembl chr 9:73,955,216...74,044,018 		JBrowse link
G Xrcc6 X-ray repair cross complementing 6 enables IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 7:113,542,992...113,563,762
Ensembl chr 7:113,543,057...113,563,762 		JBrowse link
G Zbtb10 zinc finger and BTB domain containing 10 enables ISO
IEA		 (PMID:30629181)
GO_REF:0000107		 RGD
Ensembl		 PMID:30629181 GO_REF:0000107 NCBI chr 2:92,475,254...92,509,892
Ensembl chr 2:92,479,014...92,512,515 		JBrowse link
C-rich strand telomeric DNA binding term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Nabp2 nucleic acid binding protein 2 NOT|enables ISO (PMID:25589350) RGD PMID:25589350 NCBI chr 7:830,949...836,551
Ensembl chr 7:830,949...838,027 		JBrowse link
double-stranded telomeric DNA binding term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Apex1 apurinic/apyrimidinic endodeoxyribonuclease 1 enables ISO
IEA		 (PMID:24703901)
GO_REF:0000107		 RGD
Ensembl		 PMID:24703901 GO_REF:0000107 NCBI chr15:24,144,595...24,146,785
Ensembl chr15:24,144,362...24,146,785 		JBrowse link
G Hmbox1 homeobox containing 1 enables ISO (PMID:23685356) RGD PMID:23685356 NCBI chr15:39,067,805...39,200,633
Ensembl chr15:39,067,804...39,200,323 		JBrowse link
G Pura purine rich element binding protein A enables ISO (PMID:15777841) RGD PMID:15777841 NCBI chr18:27,885,071...27,905,509
Ensembl chr18:27,884,556...27,905,513 		JBrowse link
G Rad50 RAD50 double strand break repair protein enables IEA
IBA		 GO_REF:0000118
GO_REF:0000033		 TreeGrafter
GO_Central		 GO_REF:0000033 GO_REF:0000118 NCBI chr10:37,809,353...37,861,309
Ensembl chr10:37,808,726...37,861,396 		JBrowse link
G Terf1 telomeric repeat binding factor 1 enables ISO
IBA		 (PMID:1406665)
GO_REF:0000033
(PMID:12768206), (PMID:12782650), (PMID:15608617), (PMID:21852327)		 RGD
GO_Central		 PMID:1406665 PMID:12768206 PMID:12782650 PMID:15608617 PMID:21852327 GO_REF:0000033 NCBI chr 5:3,443,103...3,472,377
Ensembl chr 5:3,443,106...3,472,340 		JBrowse link
G Terf2 telomeric repeat binding factor 2 enables ISO
IBA		 (MGI:1097302|PMID:9326950)
(PMID:18812185), (PMID:21852327), (PMID:28216226)
GO_REF:0000033		 RGD
GO_Central		 PMID:9326950 PMID:18812185 PMID:21852327 PMID:28216226 GO_REF:0000033 MGI:1097302 NCBI chr19:34,976,963...35,005,813
Ensembl chr19:34,977,471...35,005,819 		JBrowse link
G Xrcc5 X-ray repair cross complementing 5 contributes_to ISO (PMID:10409678) RGD PMID:10409678 NCBI chr 9:73,955,216...74,044,020
Ensembl chr 9:73,955,216...74,044,018 		JBrowse link
G Xrcc6 X-ray repair cross complementing 6 contributes_to ISO (PMID:10409678) RGD PMID:10409678 NCBI chr 7:113,542,992...113,563,762
Ensembl chr 7:113,543,057...113,563,762 		JBrowse link
G Zbtb48 zinc finger and BTB domain containing 48 enables ISO (PMID:28082411) RGD PMID:28082411 NCBI chr 5:162,525,234...162,533,604
Ensembl chr 5:162,525,235...162,533,585 		JBrowse link
G-rich strand telomeric DNA binding term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ctc1 CST telomere replication complex component 1 enables ISO (PMID:22763445) RGD PMID:22763445 NCBI chr10:53,714,614...53,735,298
Ensembl chr10:53,714,644...53,735,298 		JBrowse link
G Hnrnpa1 heterogeneous nuclear ribonucleoprotein A1 enables ISO (PMID:23935072) RGD PMID:23935072 NCBI chr 7:134,375,318...134,381,610
Ensembl chr 7:134,375,150...134,381,609 		JBrowse link
G Hnrnpa2b1 heterogeneous nuclear ribonucleoprotein A2/B1 enables IDA PMID:23184978 BHF-UCL PMID:23184978 RGD:11567256 NCBI chr 4:80,534,659...80,545,297
Ensembl chr 4:80,534,651...80,545,249 		JBrowse link
G Nabp2 nucleic acid binding protein 2 enables ISO
IEA		 (PMID:25589350)
GO_REF:0000107		 RGD
Ensembl		 PMID:25589350 GO_REF:0000107 NCBI chr 7:830,949...836,551
Ensembl chr 7:830,949...838,027 		JBrowse link
G Pot1 protection of telomeres 1 enables ISO
IBA		 (PMID:17237768), (PMID:21852327), (PMID:22763445)
GO_REF:0000033		 RGD
GO_Central		 PMID:17237768 PMID:21852327 PMID:22763445 GO_REF:0000033 NCBI chr 4:54,205,330...54,263,137
Ensembl chr 4:54,205,332...54,263,042 		JBrowse link
G Pot1b protection of telomeres 1B enables IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 9:9,670,355...9,728,624
Ensembl chr 9:9,670,362...9,728,532 		JBrowse link
G Rpa1 replication protein A1 enables ISO (PMID:16973897), (PMID:24747047), (PMID:26041456) RGD PMID:16973897 PMID:24747047 PMID:26041456 NCBI chr10:60,148,869...60,199,970
Ensembl chr10:60,148,793...60,199,949 		JBrowse link
G Rpa2 replication protein A2 enables ISO (PMID:24747047) RGD PMID:24747047 NCBI chr 5:144,976,789...144,989,445
Ensembl chr 5:144,976,748...144,987,350 		JBrowse link
G Terf1 telomeric repeat binding factor 1 enables ISO
IBA		 (PMID:17694070)
GO_REF:0000033		 RGD
GO_Central		 PMID:17694070 GO_REF:0000033 NCBI chr 5:3,443,103...3,472,377
Ensembl chr 5:3,443,106...3,472,340 		JBrowse link
G Terf2 telomeric repeat binding factor 2 enables ISO
IBA		 (PMID:17694070)
GO_REF:0000033		 RGD
GO_Central		 PMID:17694070 GO_REF:0000033 NCBI chr19:34,976,963...35,005,813
Ensembl chr19:34,977,471...35,005,819 		JBrowse link
G Terf2ip TERF2 interacting protein enables IEA GO_REF:0000107 Ensembl GO_REF:0000107 NCBI chr19:39,976,965...39,984,055
Ensembl chr19:39,976,906...39,984,064 		JBrowse link
single-stranded telomeric DNA binding term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ENSRNOG00000069815 enables IEA GO_REF:0000118 TreeGrafter GO_REF:0000118 Ensembl chr 4:30,933,948...30,935,941 JBrowse link
G Hnrnpa2b1 heterogeneous nuclear ribonucleoprotein A2/B1 enables ISO
IBA
IEA
IDA		 (PMID:15659580)
GO_REF:0000033
GO_REF:0000118
GO_REF:0000107		 RGD
GO_Central
TreeGrafter
Ensembl		 PMID:15659580 PMID:15659580 GO_REF:0000033 GO_REF:0000107 GO_REF:0000118, RGD:10680046 NCBI chr 4:80,534,659...80,545,297
Ensembl chr 4:80,534,651...80,545,249 		JBrowse link
G LOC108350566 heterogeneous nuclear ribonucleoproteins A2/B1 pseudogene enables IEA GO_REF:0000118 TreeGrafter GO_REF:0000118 NCBI chr 3:118,679,416...118,680,923
Ensembl chr 3:118,679,472...118,680,908
Ensembl chr 3:118,679,472...118,680,908 		JBrowse link
G Pot1 protection of telomeres 1 enables ISO (PMID:12768206), (PMID:15632080), (PMID:17237767)
(PMID:17053789)		 RGD PMID:12768206 PMID:15632080 PMID:17053789 PMID:17237767 NCBI chr 4:54,205,330...54,263,137
Ensembl chr 4:54,205,332...54,263,042 		JBrowse link
G Rad50 RAD50 double strand break repair protein enables IEA
IBA		 GO_REF:0000118
GO_REF:0000033		 TreeGrafter
GO_Central		 GO_REF:0000033 GO_REF:0000118 NCBI chr10:37,809,353...37,861,309
Ensembl chr10:37,808,726...37,861,396 		JBrowse link
G Rpa1 replication protein A1 enables IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr10:60,148,869...60,199,970
Ensembl chr10:60,148,793...60,199,949 		JBrowse link
G Stn1 STN1 subunit of CST complex enables ISS
IEA
ISO		 GO_REF:0000024
GO_REF:0000002
(PMID:19648609)
GO_REF:0000104		 UniProt
InterPro
RGD		 PMID:19648609 GO_REF:0000002 GO_REF:0000024 GO_REF:0000104 NCBI chr 1:246,391,311...246,429,844
Ensembl chr 1:246,395,613...246,429,531 		JBrowse link
telomeric G-quadruplex DNA binding term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Blm BLM RecQ like helicase enables ISO (PMID:19734539) RGD PMID:19734539 NCBI chr 1:134,409,832...134,496,073
Ensembl chr 1:134,409,857...134,484,312 		JBrowse link
G Pot1 protection of telomeres 1 NOT|enables ISO (PMID:19734539) RGD PMID:19734539 NCBI chr 4:54,205,330...54,263,137
Ensembl chr 4:54,205,332...54,263,042 		JBrowse link
G Wrn WRN RecQ like helicase enables ISO (PMID:19734539) RGD PMID:19734539 NCBI chr16:58,763,517...58,898,604
Ensembl chr16:58,763,504...58,895,450 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  molecular_function 20890
    binding 17950
      organic cyclic compound binding 6327
        nucleic acid binding 4052
          DNA binding 2359
            sequence-specific DNA binding 1574
              telomeric DNA binding 42
                double-stranded telomeric DNA binding 9
                double-stranded/single-stranded junction telomeric DNA binding 0
                single-stranded telomeric DNA binding + 15
                telomeric G-quadruplex DNA binding 3
paths to the root