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ONTOLOGY REPORT - ANNOTATIONS


Term:lipoprotein catabolic process
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Accession:GO:0042159 term browser browse the term
Definition:The chemical reactions and pathways resulting in the breakdown of any conjugated, water-soluble protein in which the covalently attached nonprotein group consists of a lipid or lipids.
Synonyms:exact_synonym: lipoprotein breakdown;   lipoprotein catabolism;   lipoprotein degradation



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lipoprotein catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Apob apolipoprotein B acts_upstream_of_or_within ISO MGI:107202 (MGI:3588634|PMID:15863839) RGD PMID:15863839 MGI:3588634 NCBI chr 6:30,844,386...30,883,983
Ensembl chr 6:30,844,368...30,892,497
JBrowse link
G Apoe apolipoprotein E involved_in
acts_upstream_of_or_within
IBA
ISO
PMID:21873635
MGI:1857303 (MGI:3770508|PMID:17720994)
RGD PMID:17720994 PMID:21873635 MGI:3770508, RGD:13792537 NCBI chr 1:79,353,924...79,357,852
Ensembl chr 1:79,353,916...79,357,932
JBrowse link
G Atm ATM serine/threonine kinase acts_upstream_of_or_within ISO MGI:88057 (MGI:3588634|PMID:15863839) RGD PMID:15863839 MGI:3588634 NCBI chr 8:53,828,741...53,932,773
Ensembl chr 8:53,831,093...53,932,437
JBrowse link
G Ctsd cathepsin D involved_in ISO (PMID:16997486) RGD PMID:16997486 NCBI chr 1:197,527,467...197,539,343
Ensembl chr 1:197,527,467...197,539,488
JBrowse link
G Ldlr low density lipoprotein receptor involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:1857212 (MGI:1313233|PMID:9788969), (MGI:3576461|PMID:15805190), (MGI:3583861|PMID:15741654)
Ensembl
RGD
PMID:9788969 PMID:15741654 PMID:15805190 GO_REF:0000107 MGI:1313233 MGI:3576461 MGI:3583861 NCBI chr 8:20,270,020...20,292,981
Ensembl chr 8:20,270,041...20,294,580
JBrowse link
protein depalmitoleylation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Notum NOTUM, palmitoleoyl-protein carboxylesterase involved_in ISO
IBA
(PMID:25731175)
PMID:21873635
(MGI:5640887|PMID:25771893)
RGD PMID:25731175 PMID:25771893 PMID:21873635 MGI:5640887, RGD:13792537 NCBI chr10:105,933,245...105,940,315
Ensembl chr10:105,933,249...105,940,315
JBrowse link
protein depalmitoylation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AABR07006474.1 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 Ensembl chr 1:214,772,800...214,773,354 JBrowse link
G Abhd10 abhydrolase domain containing 10, depalmitoylase involved_in ISO
IBA
ISS
(PMID:31740833)
PMID:21873635
(MGI:6467702|PMID:31740833)
GO_REF:0000024
RGD
UniProt
PMID:31740833 PMID:21873635 GO_REF:0000024 MGI:6467702, RGD:13792537 NCBI chr11:55,081,273...55,095,044
Ensembl chr11:55,081,049...55,107,866
JBrowse link
G Abhd12 abhydrolase domain containing 12, lysophospholipase involved_in ISO (MGI:6094388|PMID:27307232) RGD PMID:27307232 MGI:6094388 NCBI chr 3:139,659,315...139,719,529
Ensembl chr 3:139,659,317...139,719,564
JBrowse link
G Abhd13 abhydrolase domain containing 13 involved_in ISO (MGI:6094388|PMID:27307232) RGD PMID:27307232 MGI:6094388 NCBI chr16:79,501,879...79,516,712
Ensembl chr16:79,501,727...79,516,748
JBrowse link
G Abhd17a abhydrolase domain containing 17A, depalmitoylase involved_in IDA
IBA
ISO
PMID:27307232
PMID:21873635
UniProtKB:Q5VST6|UniProtKB:Q6PCB6 (PMID:26701913)
RGD PMID:26701913 PMID:27307232 PMID:21873635 RGD:13441201, RGD:13792537 NCBI chr 7:9,124,332...9,132,762
Ensembl chr 7:9,124,332...9,130,762
JBrowse link
G Abhd17b abhydrolase domain containing 17B, depalmitoylase involved_in IBA
ISO
PMID:21873635
(MGI:6094388|PMID:27307232), (MGI:6103577|PMID:28521134)
UniProtKB:Q6PCB6|UniProtKB:Q96GS6 (PMID:26701913)
RGD PMID:26701913 PMID:27307232 PMID:28521134 PMID:21873635 MGI:6094388 MGI:6103577, RGD:13792537 NCBI chr 1:219,198,294...219,232,733
Ensembl chr 1:219,198,471...219,231,933
JBrowse link
G Abhd17c abhydrolase domain containing 17C, depalmitoylase involved_in IBA
ISO
PMID:21873635
(MGI:6094388|PMID:27307232)
UniProtKB:Q5VST6|UniProtKB:Q96GS6 (PMID:26701913)
RGD PMID:26701913 PMID:27307232 PMID:21873635 MGI:6094388, RGD:13792537 NCBI chr 1:138,084,632...138,125,595
Ensembl chr 1:138,084,634...138,125,595
JBrowse link
G Lypla1 lysophospholipase 1 involved_in
acts_upstream_of_or_within
IBA
ISO
ISS
PMID:21873635
(MGI:5427292|PMID:22399288)
(MGI:6094388|PMID:27307232)
GO_REF:0000024
(PMID:19439193), (PMID:27481942)
RGD
UniProt
PMID:19439193 PMID:22399288 PMID:27307232 PMID:27481942 PMID:21873635 GO_REF:0000024 MGI:5427292 MGI:6094388, RGD:13792537 NCBI chr 5:14,679,605...14,708,774
Ensembl chr 5:14,679,606...14,708,746
JBrowse link
G Lypla2 lysophospholipase 2 involved_in IBA
ISO
ISS
PMID:21873635
(MGI:6094388|PMID:27307232)
(PMID:28826475)
GO_REF:0000024
RGD
UniProt
PMID:27307232 PMID:28826475 PMID:21873635 GO_REF:0000024 MGI:6094388, RGD:13792537 NCBI chr 5:148,198,466...148,203,062
Ensembl chr 5:148,198,439...148,203,092
JBrowse link
G Lyplal1 lysophospholipase-like 1 involved_in
acts_upstream_of_or_within
IBA
ISO
PMID:21873635
(MGI:5427292|PMID:22399288)
RGD PMID:22399288 PMID:21873635 MGI:5427292, RGD:13792537 NCBI chr13:97,626,451...97,657,901
Ensembl chr13:97,626,451...97,657,867
JBrowse link
G Ppt1 palmitoyl-protein thioesterase 1 involved_in
acts_upstream_of_or_within
ISS
ISO
IBA
GO_REF:0000024
MGI:2176390 (MGI:2154013|PMID:11717424), (MGI:3608104|PMID:16242638)
PMID:8895569
(PMID:10658183), (PMID:10737604)
PMID:21873635
UniProt
RGD
PMID:10658183 PMID:10737604 PMID:11717424 PMID:16242638 PMID:8895569 More... GO_REF:0000024 MGI:2154013 MGI:3608104, RGD:8553248, RGD:13792537 NCBI chr 5:135,121,176...135,141,076
Ensembl chr 5:135,121,163...135,142,048
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 19391
    metabolic process 11735
      primary metabolic process 10467
        protein metabolic process 5848
          protein catabolic process 1002
            lipoprotein catabolic process 17
              protein depalmitoleylation 1
              protein depalmitoylation 11
Path 2
Term Annotations click to browse term
  biological_process 19391
    metabolic process 11735
      organic substance metabolic process 11277
        macromolecule metabolic process 9736
          macromolecule catabolic process 1353
            protein catabolic process 1002
              lipoprotein catabolic process 17
                protein depalmitoleylation 1
                protein depalmitoylation 11
paths to the root