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ONTOLOGY REPORT - ANNOTATIONS


Term:retrograde transport, endosome to Golgi
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Accession:GO:0042147 term browser browse the term
Definition:The directed movement of membrane-bounded vesicles from endosomes back to the trans-Golgi network where they are recycled for further rounds of transport.


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retrograde transport, endosome to Golgi term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Ankfy1 ankyrin repeat and FYVE domain containing 1 JBrowse link 10 59,259,955 59,331,669 RGD:1624291
RGD:1600115
G Ap1s1 adaptor related protein complex 1 subunit sigma 1 JBrowse link 12 22,665,128 22,676,079 RGD:1624291
RGD:1600115
G Arfrp1 ADP-ribosylation factor related protein 1 JBrowse link 3 176,857,667 176,865,105 RGD:1624291
RGD:1600115
G Arl1 ADP-ribosylation factor like GTPase 1 JBrowse link 7 29,282,411 29,293,455 RGD:1624291
RGD:1600115
G Baiap3 BAI1-associated protein 3 JBrowse link 10 14,601,133 14,613,881 RGD:1624291
RGD:1600115
G Bet1l Bet1 golgi vesicular membrane trafficking protein-like JBrowse link 1 213,602,836 213,606,507 RGD:1624291
RGD:13792537
RGD:1600115
G Cln5 CLN5, intracellular trafficking protein JBrowse link 15 93,634,815 93,644,146 RGD:1624291
G Cltc clathrin heavy chain JBrowse link 10 74,014,560 74,070,578 RGD:1624291
G Dctn1 dynactin subunit 1 JBrowse link 4 114,876,770 114,896,567 RGD:1624291
G Dennd2a DENN domain containing 2A JBrowse link 4 67,242,257 67,342,993 RGD:1624291
RGD:1600115
G Dennd5a DENN domain containing 5A JBrowse link 1 174,524,047 174,588,553 RGD:1624291
RGD:1600115
G Erc1 ELKS/RAB6-interacting/CAST family member 1 JBrowse link 4 152,087,393 152,380,023 RGD:1624291
RGD:1600115
G Evi5 ecotropic viral integration site 5 JBrowse link 14 2,892,738 3,038,237 RGD:1624291
RGD:1600115
G Gbf1 golgi brefeldin A resistant guanine nucleotide exchange factor 1 JBrowse link 1 265,904,616 266,033,107 RGD:1624291
RGD:1600115
G Gcc2 GRIP and coiled-coil domain containing 2 JBrowse link 20 27,832,960 27,879,764 RGD:1624291
G Gga1 golgi associated, gamma adaptin ear containing, ARF binding protein 1 JBrowse link 7 120,102,596 120,119,738 RGD:1624291
RGD:1600115
G Gosr1 golgi SNAP receptor complex member 1 JBrowse link 10 63,405,526 63,442,257 RGD:1624291
RGD:1600115
G Gosr2 golgi SNAP receptor complex member 2 JBrowse link 10 91,735,772 91,756,123 RGD:13792537
G Heatr5a HEAT repeat containing 5A JBrowse link 6 72,648,654 72,750,202 RGD:13792537
G Heatr5b HEAT repeat containing 5B JBrowse link 6 1,330,314 1,410,339 RGD:13792537
G LOC100911994 coiled-coil domain-containing protein 132-like JBrowse link 4 31,332,759 31,352,476 RGD:1600115
G Magel2 MAGE family member L2 JBrowse link 1 123,015,404 123,019,945 RGD:1624291
RGD:1600115
G Pheta1 PH domain containing endocytic trafficking adaptor 1 JBrowse link 12 40,225,316 40,230,573 RGD:1624291
RGD:13792537
G Pheta2 PH domain containing endocytic trafficking adaptor 2 JBrowse link 7 123,572,153 123,578,590 RGD:1624291
RGD:13792537
G Pikfyve phosphoinositide kinase, FYVE-type zinc finger containing JBrowse link 9 71,911,744 72,005,816 RGD:1624291
RGD:1600115
G Plekhj1 pleckstrin homology domain containing J1 JBrowse link 7 11,784,314 11,786,476 RGD:13792537
G Pqlc1 PQ loop repeat containing 1 JBrowse link 18 76,768,466 76,805,773 RGD:13792537
G Prepl prolyl endopeptidase-like JBrowse link 6 8,316,861 8,346,293 RGD:1600115
RGD:1624291
G Rab29 RAB29, member RAS oncogene family JBrowse link 13 48,644,575 48,650,229 RGD:1624291
RGD:1600115
G Rab6a RAB6A, member RAS oncogene family JBrowse link 1 165,624,973 165,664,201 RGD:13792537
G Rab6b RAB6B, member RAS oncogene family JBrowse link 8 111,600,375 111,668,817 RGD:13792537
G Rab7a RAB7A, member RAS oncogene family JBrowse link 4 119,910,461 119,963,065 RGD:1624291
G Rab9a RAB9A, member RAS oncogene family JBrowse link X 29,525,256 29,547,295 RGD:13792537
G Rab9b RAB9B, member RAS oncogene family JBrowse link X 107,531,404 107,542,510 RGD:13792537
G Rgp1 RGP1 homolog, RAB6A GEF complex partner 1 JBrowse link 5 59,080,290 59,088,777 RGD:1624291
RGD:13792537
G Rhobtb3 Rho-related BTB domain containing 3 JBrowse link 2 2,627,655 2,683,305 RGD:1624291
RGD:1600115
G Ric1 RIC1 homolog, RAB6A GEF complex partner 1 JBrowse link 1 247,688,778 247,784,219 RGD:1624291
RGD:13792537
G Rnf126 ring finger protein 126 JBrowse link 7 12,820,796 12,828,325 RGD:1624291
RGD:1600115
G Snx1 sorting nexin 1 JBrowse link 8 71,745,687 71,786,182 RGD:1624291
RGD:1600115
G Snx2 sorting nexin 2 JBrowse link 18 48,132,386 48,173,974 RGD:1624291
G Snx32 sorting nexin 32 JBrowse link 1 220,873,782 220,890,804 RGD:13792537
G Snx5 sorting nexin 5 JBrowse link 3 138,378,032 138,397,944 RGD:1624291
RGD:13792537
G Snx6 sorting nexin 6 JBrowse link 6 75,626,927 75,670,172 RGD:1624291
RGD:13792537
G Spag9 sperm associated antigen 9 JBrowse link 10 81,693,736 81,827,562 RGD:1624291
RGD:1600115
G Stx16 syntaxin 16 JBrowse link 3 172,154,739 172,183,699 RGD:1624291
RGD:1600115
G Stx5 syntaxin 5 JBrowse link 1 224,939,497 224,955,658 RGD:1624291
G Stx6 syntaxin 6 JBrowse link 13 72,804,218 72,850,757 RGD:1624291
RGD:13792537
G Tbc1d10a TBC1 domain family, member 10a JBrowse link 14 84,417,320 84,445,034 RGD:1624291
RGD:1600115
G Tbc1d10b TBC1 domain family, member 10b JBrowse link 1 198,641,018 198,652,674 RGD:1624291
RGD:1600115
G Tbc1d10c TBC1 domain family, member 10C JBrowse link 1 219,431,094 219,439,102 RGD:1624291
RGD:1600115
G Tbc1d17 TBC1 domain family, member 17 JBrowse link 1 100,836,993 100,845,216 RGD:1624291
RGD:1600115
G Tbc1d23 TBC1 domain family, member 23 JBrowse link 11 45,401,396 45,459,841 RGD:1624291
RGD:1600115
G Tbc1d5 TBC1 domain family, member 5 JBrowse link 9 1,144,641 1,747,732 RGD:1624291
RGD:1600115
G Tmem87a transmembrane protein 87A JBrowse link 3 112,128,138 112,174,097 RGD:1624291
RGD:1600115
G Tmem87b transmembrane protein 87B JBrowse link 3 121,357,787 121,393,443 RGD:1624291
RGD:1600115
G Trim27 tripartite motif-containing 27 JBrowse link 17 45,613,863 45,626,212 RGD:1624291
RGD:1600115
G Ube2o ubiquitin-conjugating enzyme E2O JBrowse link 10 105,505,721 105,553,167 RGD:1624291
RGD:1600115
G Vamp3 vesicle-associated membrane protein 3 JBrowse link 5 168,126,157 168,136,628 RGD:1624291
RGD:1600115
G Vps26a VPS26 retromer complex component A JBrowse link 20 32,085,465 32,115,310 RGD:1624291
RGD:13792537
RGD:1600115
G Vps26b VPS26 retromer complex component B JBrowse link 8 28,054,407 28,075,514 RGD:1624291
RGD:13792537
G Vps29 VPS29 retromer complex component JBrowse link 12 39,690,069 39,699,114 RGD:1600115
RGD:13792537
G Vps35 VPS35 retromer complex component JBrowse link 19 27,464,937 27,500,636 RGD:8553873
RGD:13792537
RGD:1624291
G Vps50 VPS50 subunit of EARP/GARPII complex JBrowse link 4 28,441,255 28,551,784 RGD:1624291
RGD:1600115
G Vps51 VPS51 subunit of GARP complex RGD:1624291
G Vps52 VPS52 subunit of GARP complex JBrowse link 20 5,431,997 5,441,736 RGD:13792537
G Vps53 VPS53 subunit of GARP complex JBrowse link 10 64,218,596 64,341,064 RGD:1624291
RGD:13792537
G Vps54 VPS54 subunit of GARP complex JBrowse link 14 106,153,407 106,207,715 RGD:1624291
RGD:13792537
RGD:1600115
G Vti1a vesicle transport through interaction with t-SNAREs 1A JBrowse link 1 276,310,072 276,508,635 RGD:1600115
RGD:13792537
RGD:1624291
G Vti1b vesicle transport through interaction with t-SNAREs 1B JBrowse link 6 102,340,261 102,353,612 RGD:13792537
G Washc1 WASH complex subunit 1 JBrowse link 9 113,918,914 113,936,861 RGD:1600115
RGD:1624291
G Washc2c WASH complex subunit 2C JBrowse link 4 148,139,512 148,197,363 RGD:1624291
RGD:1600115
G Ykt6 YKT6 v-SNARE homolog JBrowse link 14 86,196,018 86,207,057 RGD:1624291
RGD:1600115
early endosome to Golgi transport term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Ehd3 EH-domain containing 3 JBrowse link 6 25,076,012 25,102,457 RGD:1600115
RGD:1624291
G Lman1 lectin, mannose-binding, 1 JBrowse link 18 61,683,377 61,707,344 RGD:1624291
G Rab6a RAB6A, member RAS oncogene family JBrowse link 1 165,624,973 165,664,201 RGD:1624291
RGD:1600115
G Rbsn rabenosyn, RAB effector JBrowse link 4 124,050,559 124,080,919 RGD:1624291
RGD:1600115
G Snx1 sorting nexin 1 JBrowse link 8 71,745,687 71,786,182 RGD:1624291
RGD:13792537
G Snx2 sorting nexin 2 JBrowse link 18 48,132,386 48,173,974 RGD:13792537
G Snx8 sorting nexin 8 JBrowse link 12 16,340,917 16,389,500 RGD:1624291
RGD:1600115
G Stx5 syntaxin 5 JBrowse link 1 224,939,497 224,955,658 RGD:1624291
RGD:1600115
G Surf4 surfeit 4 JBrowse link 3 5,468,284 5,481,447 RGD:1624291
G Tmed9 transmembrane p24 trafficking protein 9 JBrowse link 17 9,560,735 9,565,249 RGD:1624291
G Trappc10 trafficking protein particle complex 10 JBrowse link 20 11,168,298 11,228,634 RGD:13792537
late endosome to Golgi transport term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Gcc2 GRIP and coiled-coil domain containing 2 JBrowse link 20 27,832,960 27,879,764 RGD:1600115
RGD:13792537
RGD:1624291
G Rab7b Rab7b, member RAS oncogene family JBrowse link 13 48,456,143 48,483,714 RGD:1624291
RGD:1600115
G Sgsm2 small G protein signaling modulator 2 JBrowse link 10 61,703,837 61,745,110 RGD:1624291
RGD:1600115
positive regulation of retrograde transport, endosome to Golgi term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Eipr1 EARP complex and GARP complex interacting protein 1 JBrowse link 6 48,021,771 48,135,241 RGD:1600115
RGD:1624291
recycling endosome to Golgi transport term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Gcc2 GRIP and coiled-coil domain containing 2 JBrowse link 20 27,832,960 27,879,764 RGD:1600115
RGD:13792537
RGD:1624291
G Tbc1d14 TBC1 domain family, member 14 JBrowse link 14 79,172,272 79,438,765 RGD:1600115
RGD:1624291
regulation of retrograde transport, endosome to Golgi term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Lrrk2 leucine-rich repeat kinase 2 JBrowse link 7 132,857,311 133,018,549 RGD:1624291
RGD:13792537
G Rab29 RAB29, member RAS oncogene family JBrowse link 13 48,644,575 48,650,229 RGD:8553873

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 17968
    localization 6025
      cellular localization 2681
        intracellular transport 1435
          endosomal transport 209
            retrograde transport, endosome to Golgi 84
              early endosome to Golgi transport 11
              late endosome to Golgi transport 3
              negative regulation of retrograde transport, endosome to Golgi 0
              positive regulation of retrograde transport, endosome to Golgi 1
              recycling endosome to Golgi transport 2
              regulation of retrograde transport, endosome to Golgi + 3
Path 2
Term Annotations click to browse term
  biological_process 17968
    localization 6025
      establishment of localization 4624
        transport 4483
          vesicle-mediated transport 1450
            endosomal transport 209
              retrograde transport, endosome to Golgi 84
                early endosome to Golgi transport 11
                late endosome to Golgi transport 3
                negative regulation of retrograde transport, endosome to Golgi 0
                positive regulation of retrograde transport, endosome to Golgi 1
                recycling endosome to Golgi transport 2
                regulation of retrograde transport, endosome to Golgi + 3
paths to the root

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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.