Submit Data |  Help |  Video Tutorials |  News |  Publications |  FTP Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes QTLs Strains Markers Genome Information Ontologies Cell Lines References FTP Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) RatMine GViewer (Genome Viewer) Overgo Probe Designer ACP Haplotyper Genome Scanner
Aging & Age-Related Disease Cancer Cardiovascular Disease COVID-19 Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models   new Genetic Models Autism Models PhenoMiner (Quantitative Phenotypes) Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes GERRC (Gene Editing Rat Resource Center) Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Poster Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources

ONTOLOGY REPORT - ANNOTATIONS

Term:cell migration involved in gastrulation
go back to main search page
Accession:GO:0042074 term browser browse the term
Definition:The migration of individual cells within the blastocyst to help establish the multi-layered body plan of the organism (gastrulation). For example, the migration of cells from the surface to the interior of the embryo (ingression).

show annotations for term's descendants           Sort by:
 
cell migration involved in gastrulation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Amot angiomotin ISO MGI:2656627 (MGI:2655854|PMID:12676095) RGD PMID:12676095 MGI:2655854 NCBI chr  X:116,751,231...116,810,238
Ensembl chr  X:116,751,230...116,792,864 		JBrowse link
G Cer1 cerberus 1, DAN family BMP antagonist ISO MGI:107405 (MGI:3042338|PMID:15004567) RGD PMID:15004567 MGI:3042338 NCBI chr 5:101,003,019...101,006,375
Ensembl chr 5:101,003,023...101,006,375 		JBrowse link
G Gpc3 glypican 3 involved_in ISS GO_REF:0000024 UniProt GO_REF:0000024 NCBI chr  X:139,579,268...139,947,093
Ensembl chr  X:139,579,268...139,916,883 		JBrowse link
G Lefty1 left right determination factor 1 ISO MGI:1201414 (MGI:3042338|PMID:15004567) RGD PMID:15004567 MGI:3042338 NCBI chr13:99,212,778...99,217,786
Ensembl chr13:99,214,389...99,217,786 		JBrowse link
G Lrp5 LDL receptor related protein 5 ISO MGI:1298218 (MGI:3045836|PMID:15142971) RGD PMID:15142971 MGI:3045836 NCBI chr 1:218,816,833...218,920,147
Ensembl chr 1:218,816,841...218,920,094 		JBrowse link
G Lrp6 LDL receptor related protein 6 ISO MGI:1278315 (MGI:3045836|PMID:15142971) RGD PMID:15142971 MGI:3045836 NCBI chr 4:168,194,054...168,323,962
Ensembl chr 4:168,194,927...168,323,751 		JBrowse link
G Megf8 multiple EGF-like-domains 8 involved_in IEA
ISO		 GO_REF:0000107
(PMID:23063620)		 Ensembl
RGD		 PMID:23063620 GO_REF:0000107 NCBI chr 1:82,184,671...82,234,045
Ensembl chr 1:82,185,034...82,234,045 		JBrowse link
G Mixl1 Mix paired-like homeobox 1 ISO MGI:2387829 (MGI:3695524|PMID:17151016) RGD PMID:17151016 MGI:3695524 NCBI chr13:97,278,258...97,282,299
Ensembl chr13:98,973,041...98,975,426
Ensembl chr13:98,973,041...98,975,426 		JBrowse link
G Nckap1 NCK-associated protein 1 ISO MGI:3578145 (MGI:3701029|PMID:16831833) RGD PMID:16831833 MGI:3701029 NCBI chr 3:67,725,180...67,804,680
Ensembl chr 3:67,725,947...67,787,990 		JBrowse link
G Nodal nodal growth differentiation factor ISO (MGI:3042338|PMID:15004567) RGD PMID:15004567 MGI:3042338 NCBI chr20:31,035,729...31,044,096
Ensembl chr20:31,035,729...31,044,096 		JBrowse link
G Ric8a RIC8 guanine nucleotide exchange factor A involved_in IEA
ISO		 GO_REF:0000107
MGI:3608888 (MGI:4849883|PMID:21069829)		 Ensembl
RGD		 PMID:21069829 GO_REF:0000107 MGI:4849883 NCBI chr 1:213,606,599...213,612,905
Ensembl chr 1:213,606,599...213,612,904 		JBrowse link
G Sox17 SRY-box transcription factor 17 ISO MGI:3717121 (MGI:4946462|PMID:21146513) RGD PMID:21146513 MGI:4946462 NCBI chr 5:14,890,318...14,895,907
Ensembl chr 5:14,890,408...14,895,907 		JBrowse link
cell migration involved in mesendoderm migration term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Fgf8 fibroblast growth factor 8 ISO MGI:2150346 (MGI:1341493|PMID:10421635) RGD PMID:10421635 MGI:1341493 NCBI chr 1:265,492,949...265,498,965
Ensembl chr 1:265,493,124...265,498,831 		JBrowse link
ingression involved in gastrulation with mouth forming second term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Crb2 crumbs cell polarity complex component 2 ISO (MGI:5823085|PMID:27870829) RGD PMID:27870829 MGI:5823085 NCBI chr 3:22,037,812...22,061,247
Ensembl chr 3:22,038,357...22,058,871 		JBrowse link
mesoderm migration involved in gastrulation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Epb41l5 erythrocyte membrane protein band 4.1 like 5 ISO MGI:3822451 (MGI:3821807|PMID:18794329) RGD PMID:18794329 MGI:3821807 NCBI chr13:35,622,472...35,673,449
Ensembl chr13:35,580,098...35,668,968 		JBrowse link
G LOC100912649 uncharacterized LOC100912649 involved_in ISS GO_REF:0000024 UniProt GO_REF:0000024
G Tbxt T-box transcription factor T ISO MGI:1857760 (MGI:71468|PMID:7720590) RGD PMID:7720590 MGI:71468 NCBI chr 1:52,887,067...52,900,691
Ensembl chr 1:52,887,067...52,894,832 		JBrowse link
planar cell polarity pathway involved in gastrula mediolateral intercalation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Wnt11 Wnt family member 11 ISO MGI:98958 (MGI:5634837|PMID:25813538) RGD PMID:25813538 MGI:5634837 NCBI chr 1:163,794,136...163,813,756
Ensembl chr 1:163,797,660...163,813,756 		JBrowse link
G Wnt5a Wnt family member 5A involved_in IEA
ISO		 GO_REF:0000107
MGI:101948 (MGI:5634837|PMID:25813538)		 Ensembl
RGD		 PMID:25813538 GO_REF:0000107 MGI:5634837 NCBI chr16:4,469,451...4,490,271
Ensembl chr16:4,469,468...4,489,860 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 20078
    developmental process 6848
      anatomical structure morphogenesis 2891
        embryonic morphogenesis 693
          gastrulation 209
            cell migration involved in gastrulation 19
              cell migration involved in mesendoderm migration + 1
              dorsal convergence 0
              establishment of cell polarity involved in gastrulation cell migration + 0
              ingression involved in gastrulation with mouth forming second 1
              mediolateral intercalation + 2
              mesoderm migration involved in gastrulation 3
Path 2
Term Annotations click to browse term
  biological_process 20078
    developmental process 6848
      anatomical structure development 6308
        multicellular organism development 5783
          embryo development 1312
            embryonic morphogenesis 693
              gastrulation 209
                cell migration involved in gastrulation 19
                  cell migration involved in mesendoderm migration + 1
                  dorsal convergence 0
                  establishment of cell polarity involved in gastrulation cell migration + 0
                  ingression involved in gastrulation with mouth forming second 1
                  mediolateral intercalation + 2
                  mesoderm migration involved in gastrulation 3
paths to the root