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ONTOLOGY REPORT - ANNOTATIONS


Term:regulation of gene expression, epigenetic
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Accession:GO:0040029 term browser browse the term
Definition:A process that modulates the frequency, rate or extent of gene expression by remodelling of chromatin by either modifying the chromatin fiber, the nucleosomal histones, or the DNA. Once established, this regulation may be maintained over many cell divisions. It can also be heritable in the absence of the instigating signal.


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regulation of gene expression, epigenetic term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cggbp1 CGG triplet repeat binding protein 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936610:1,683,315...1,690,402 JBrowse link
G Ctcf CCCTC-binding factor involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936475:17,987,137...18,031,733 JBrowse link
G Glmn glomulin, FKBP associated protein involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936537:6,778,317...6,827,384 JBrowse link
G Gpx1 glutathione peroxidase 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936529:997,943...999,123 JBrowse link
G Hdac4 histone deacetylase 4 involved_in ISO (PMID:24413532) UniProt PMID:24413532 NCBI chrNW_004936745:1,730,743...1,942,071 JBrowse link
G Hdac5 histone deacetylase 5 involved_in IEA InterPro GO_REF:0000002 NCBI chrNW_004936541:561,721...598,915 JBrowse link
G Hdac6 histone deacetylase 6 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936721:757,500...778,416 JBrowse link
G LOC101954283 histone H3.1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936671:3,181,580...3,182,312 JBrowse link
G LOC101956307 histone H3 involved_in ISO (PMID:16267050) BHF-UCL PMID:16267050 NCBI chrNW_004936671:3,131,668...3,132,428 JBrowse link
G LOC101971629 core histone macro-H2A.1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936597:2,496,489...2,556,352 JBrowse link
G LOC101978402 agouti signaling protein acts_upstream_of_or_within ISO (MGI:2652932|PMID:12601169) MGI PMID:12601169 MGI:2652932 NCBI chrNW_004936561:6,341,667...6,346,440 JBrowse link
G Mecp2 methyl-CpG binding protein 2 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:3789859|PMID:17532643)
(MGI:3576944|PMID:15757975)
MGI
Ensembl
PMID:15757975 PMID:17532643 GO_REF:0000107 MGI:3576944 MGI:3789859 NCBI chrNW_004936809:902,938...967,771 JBrowse link
G Morc1 MORC family CW-type zinc finger 1 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:5694015|PMID:25503965) MGI
Ensembl
PMID:25503965 GO_REF:0000107 MGI:5694015 NCBI chrNW_004936645:2,570,071...2,725,796 JBrowse link
G Mta1 metastasis associated 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936621:117,785...140,917 JBrowse link
G Prdm14 PR/SET domain 14 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:5429781|PMID:22482507) MGI
Ensembl
PMID:22482507 GO_REF:0000107 MGI:5429781 NCBI chrNW_004936496:14,789,443...14,820,967 JBrowse link
G Tdg thymine DNA glycosylase involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936492:10,476,472...10,506,144 JBrowse link
G Tfap2c transcription factor AP-2 gamma involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936875:491,032...498,732 JBrowse link
G Znf335 zinc finger protein 335 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936514:7,070,030...7,090,466 JBrowse link
DNA methylation-dependent heterochromatin assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dnmt1 DNA methyltransferase 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936659:520,181...565,496 JBrowse link
G Dnmt3a DNA methyltransferase 3 alpha acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:3611125|PMID:16322236)
(MGI:3768461|PMID:17938196)
MGI
Ensembl
PMID:16322236 PMID:17938196 GO_REF:0000107 MGI:3611125 MGI:3768461 NCBI chrNW_004936493:6,963,406...7,013,256 JBrowse link
G Dnmt3b DNA methyltransferase 3 beta acts_upstream_of_or_within ISO (MGI:3768461|PMID:17938196) MGI PMID:17938196 MGI:3768461 NCBI chrNW_004936485:19,547,836...19,570,716 JBrowse link
G Hdac1 histone deacetylase 1 involved_in ISO (PMID:23770133) BHF-UCL PMID:23770133 NCBI chrNW_004936474:15,320,635...15,351,418 JBrowse link
G Hells helicase, lymphoid specific involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936601:626,354...662,477 JBrowse link
G Kmt2b lysine methyltransferase 2B acts_upstream_of_or_within ISO (MGI:4849597|PMID:20808952) MGI PMID:20808952 MGI:4849597 NCBI chrNW_004936570:583,616...605,846 JBrowse link
G Mbd2 methyl-CpG binding domain protein 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936497:9,512,350...9,619,250 JBrowse link
G Mbd3 methyl-CpG binding domain protein 3 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:3611125|PMID:16322236) MGI
Ensembl
PMID:16322236 GO_REF:0000107 MGI:3611125 NCBI chrNW_004936588:865,046...873,821 JBrowse link
G Smarca4 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4 acts_upstream_of_or_within ISO (MGI:3611125|PMID:16322236) MGI PMID:16322236 MGI:3611125 NCBI chrNW_004936659:1,152,846...1,246,718 JBrowse link
dosage compensation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G LOC101956559 core histone macro-H2A.2 acts_upstream_of_or_within
involved_in
ISO
IEA
(PMID:11331621) MGI
Ensembl
PMID:11331621 GO_REF:0000107 NCBI chrNW_004936521:8,474,408...8,509,269 JBrowse link
G LOC101971629 core histone macro-H2A.1 acts_upstream_of_or_within
involved_in
ISO
IEA
(PMID:15053874) MGI
Ensembl
PMID:15053874 GO_REF:0000107 NCBI chrNW_004936597:2,496,489...2,556,352 JBrowse link
dosage compensation by inactivation of X chromosome term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Brca1 BRCA1 DNA repair associated acts_upstream_of_or_within ISO (MGI:2389513|PMID:12419249) MGI PMID:12419249 MGI:2389513 NCBI chrNW_004936490:17,735,444...17,801,456 JBrowse link
G Eif1 eukaryotic translation initiation factor 1 acts_upstream_of_or_within ISO (MGI:3694307|PMID:16789828) MGI PMID:16789828 MGI:3694307 NCBI chrNW_004936490:16,617,774...16,620,384 JBrowse link
G Exosc10 exosome component 10 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:3694307|PMID:16789828) MGI
Ensembl
PMID:16789828 GO_REF:0000107 MGI:3694307 NCBI chrNW_004936474:130,735...153,608 JBrowse link
G Hnrnpu heterogeneous nuclear ribonucleoprotein U involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936526:6,014,745...6,022,213 JBrowse link
G Jarid2 jumonji and AT-rich interaction domain containing 2 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:5888829|PMID:27892467) MGI
Ensembl
PMID:27892467 GO_REF:0000107 MGI:5888829 NCBI chrNW_004936552:1,566,382...1,786,837 JBrowse link
G Lrif1 ligand dependent nuclear receptor interacting factor 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936704:2,313,923...2,334,839 JBrowse link
G Mettl3 methyltransferase 3, N6-adenosine-methyltransferase complex catalytic subunit involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936880:646,835...661,312 JBrowse link
G Rbm15 RNA binding motif protein 15 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936704:1,779,981...1,787,339 JBrowse link
G Rbm15b RNA binding motif protein 15B involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936529:2,780,110...2,782,775 JBrowse link
G Smchd1 structural maintenance of chromosomes flexible hinge domain containing 1 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:3821390|PMID:18425126), (MGI:5532809|PMID:23754746) MGI
Ensembl
PMID:18425126 PMID:23754746 GO_REF:0000107 MGI:3821390 MGI:5532809 NCBI chrNW_004936672:1,686,070...1,838,315 JBrowse link
G Suz12 SUZ12 polycomb repressive complex 2 subunit acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:5888829|PMID:27892467) MGI
Ensembl
PMID:27892467 GO_REF:0000107 MGI:5888829 NCBI chrNW_004936538:2,921,987...2,971,521 JBrowse link
G Upf1 UPF1 RNA helicase and ATPase acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:3694307|PMID:16789828) MGI
Ensembl
PMID:16789828 GO_REF:0000107 MGI:3694307 NCBI chrNW_004936596:2,469,444...2,505,688 JBrowse link
G Ythdc1 YTH domain containing 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936582:130,593...161,275 JBrowse link
epigenetic maintenance of chromatin in transcription-competent conformation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Chek1 checkpoint kinase 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936743:2,004,535...2,027,287 JBrowse link
G Ep300 E1A binding protein p300 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936492:696,982...778,132 JBrowse link
G LOC101969524 protein FAM47E involved_in ISO (PMID:33376131) ARUK-UCL PMID:33376131 NCBI chrNW_004936676:263,974...287,742 JBrowse link
G LOC101971629 core histone macro-H2A.1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936597:2,496,489...2,556,352 JBrowse link
G Nr3c1 nuclear receptor subfamily 3 group C member 1 involved_in ISO PMID:12917342 UniProt PMID:12917342 RGD:8553888 NCBI chrNW_004936504:10,960,069...11,056,834 JBrowse link
G Pabpc1l poly(A) binding protein cytoplasmic 1 like acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:5688228|PMID:26134869) MGI
Ensembl
PMID:26134869 GO_REF:0000107 MGI:5688228 NCBI chrNW_004936514:7,809,030...7,831,606 JBrowse link
G Padi2 peptidyl arginine deiminase 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936474:4,033,703...4,066,468 JBrowse link
G Phf2 PHD finger protein 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936487:2,912,114...2,956,429 JBrowse link
G Smarcd1 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936512:7,747,066...7,759,943 JBrowse link
G Sphk2 sphingosine kinase 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936664:2,668,708...2,676,608 JBrowse link
G Wbp2 WW domain binding protein 2 involved_in IEA InterPro GO_REF:0000002 NCBI chrNW_004936594:1,023,085...1,031,571 JBrowse link
genomic imprinting term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Axin1 axin 1 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:2652932|PMID:12601169) MGI
Ensembl
PMID:12601169 GO_REF:0000107 MGI:2652932 NCBI chrNW_004936501:599,963...633,837 JBrowse link
G Cdkn1c cyclin dependent kinase inhibitor 1C acts_upstream_of_or_within ISO (MGI:3839493|PMID:19276117) MGI PMID:19276117 MGI:3839493 NCBI chrNW_004936794:1,023,891...1,025,470 JBrowse link
G Ctcf CCCTC-binding factor involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936475:17,987,137...18,031,733 JBrowse link
G Dnmt3l DNA methyltransferase 3 like acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:3663953|PMID:16920095) MGI
Ensembl
PMID:16920095 GO_REF:0000107 MGI:3663953 NCBI chrNW_004936500:143,078...160,318 JBrowse link
G LOC101971027 neuroendocrine secretory protein 55 acts_upstream_of_or_within ISO (MGI:4454202|PMID:20427744) MGI PMID:20427744 MGI:4454202 NCBI chrNW_004936530:1,353,432...1,407,437 JBrowse link
G LOC101978402 agouti signaling protein acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:2652932|PMID:12601169) MGI
Ensembl
PMID:12601169 GO_REF:0000107 MGI:2652932 NCBI chrNW_004936561:6,341,667...6,346,440 JBrowse link
G Ndn necdin, MAGE family member acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:1345919|PMID:10508517) MGI
Ensembl
PMID:10508517 GO_REF:0000107 MGI:1345919 NCBI chrNW_004936805:849,218...850,894 JBrowse link
G Zdbf2 zinc finger DBF-type containing 2 acts_upstream_of_or_within ISO (MGI:6151717|PMID:27841881) MGI PMID:27841881 MGI:6151717 NCBI chrNW_004936631:2,649,792...2,686,430 JBrowse link
G Zfp57 ZFP57 zinc finger protein acts_upstream_of_or_within ISO (MGI:6506156|PMID:33500348) MGI PMID:33500348 MGI:6506156 NCBI chrNW_004936723:1,063,969...1,069,986 JBrowse link
heterochromatin assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bahd1 bromo adjacent homology domain containing 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936471:3,902,558...3,927,746 JBrowse link
G Baz2a bromodomain adjacent to zinc finger domain 2A acts_upstream_of_or_within ISO (MGI:4462332|PMID:20168299)
(MGI:3653583|PMID:16678107)
MGI PMID:16678107 PMID:20168299 MGI:3653583 MGI:4462332 NCBI chrNW_004936646:914,944...949,057 JBrowse link
G Cbx3 chromobox 3 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936478:2,981,218...2,989,329 JBrowse link
G Ctbp1 C-terminal binding protein 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936477:22,032,712...22,055,160 JBrowse link
G Ezh1 enhancer of zeste 1 polycomb repressive complex 2 subunit involved_in ISO (MGI:3820717|PMID:19026781) ARUK-UCL PMID:19026781 MGI:3820717 NCBI chrNW_004936490:17,430,383...17,465,889 JBrowse link
G Hells helicase, lymphoid specific acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:3510059|PMID:15448183) MGI
Ensembl
PMID:15448183 GO_REF:0000107 MGI:3510059 NCBI chrNW_004936601:626,354...662,477 JBrowse link
G Hmga2 high mobility group AT-hook 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936545:3,944,419...3,958,289 JBrowse link
G Kmt2d lysine methyltransferase 2D involved_in ISO (MGI:4849597|PMID:20808952) UniProt PMID:20808952 MGI:4849597 NCBI chrNW_004936512:6,819,240...6,860,852 JBrowse link
G L3mbtl1 L3MBTL histone methyl-lysine binding protein 1 involved_in ISO (PMID:17540172) ComplexPortal PMID:17540172 NCBI chrNW_004936530:3,038,873...3,069,724 JBrowse link
G LOC101970440 histone H1.0 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936492:3,314,991...3,315,974 JBrowse link
G Mecp2 methyl-CpG binding protein 2 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:3530434|PMID:15608638) MGI
Ensembl
PMID:15608638 GO_REF:0000107 MGI:3530434 NCBI chrNW_004936809:902,938...967,771 JBrowse link
G Ppm1d protein phosphatase, Mg2+/Mn2+ dependent 1D involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936490:2,139,201...2,183,850 JBrowse link
G Rb1 RB transcriptional corepressor 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936565:1,596,227...1,746,706 JBrowse link
G Sirt1 sirtuin 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936521:10,296,097...10,316,673 JBrowse link
G Smarca5 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936535:4,857,816...4,890,266 JBrowse link
G Tnp1 transition protein 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936586:504,864...505,447 JBrowse link
G Ubr2 ubiquitin protein ligase E3 component n-recognin 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936476:17,178,981...17,322,600 JBrowse link
inactivation of paternal X chromosome term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Prdm14 PR/SET domain 14 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:5548017|PMID:24268575) MGI
Ensembl
PMID:24268575 GO_REF:0000107 MGI:5548017 NCBI chrNW_004936496:14,789,443...14,820,967 JBrowse link
inactivation of X chromosome by genomic imprinting term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Pcgf3 polycomb group ring finger 3 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936477:22,349,166...22,373,256 JBrowse link
G Pcgf5 polycomb group ring finger 5 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936601:3,201,589...3,268,990 JBrowse link
inactivation of X chromosome by heterochromatin assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Smchd1 structural maintenance of chromosomes flexible hinge domain containing 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936672:1,686,070...1,838,315 JBrowse link
negative regulation of DNA methylation-dependent heterochromatin assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Aicda activation induced cytidine deaminase involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936870:25,039...34,601 JBrowse link
G Apobec1 apolipoprotein B mRNA editing enzyme catalytic subunit 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004939393:628...6,234 JBrowse link
G LOC101960775 cell division cycle and apoptosis regulator protein 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936521:9,573,918...9,624,469 JBrowse link
negative regulation of gene expression, epigenetic term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bmi1 BMI1 proto-oncogene, polycomb ring finger involved_in ISO (PMID:24623306) UniProt PMID:24623306 NCBI chrNW_004936520:5,707,542...5,716,966 JBrowse link
G Crebzf CREB/ATF bZIP transcription factor involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936498:13,547,968...13,553,846 JBrowse link
G Dnmt3b DNA methyltransferase 3 beta involved_in ISO (MGI:3765099|PMID:18056424) UniProt PMID:18056424 MGI:3765099 NCBI chrNW_004936485:19,547,836...19,570,716 JBrowse link
G Epc1 enhancer of polycomb homolog 1 acts_upstream_of_or_within
involved_in
ISO
IEA
(PMID:10976108) MGI
Ensembl
PMID:10976108 GO_REF:0000107 NCBI chrNW_004936574:966,655...1,050,537 JBrowse link
G Ezh2 enhancer of zeste 2 polycomb repressive complex 2 subunit involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936527:5,024,077...5,069,152 JBrowse link
G Lhx2 LIM homeobox 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936487:12,395,817...12,413,860 JBrowse link
G LOC101956559 core histone macro-H2A.2 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936521:8,474,408...8,509,269 JBrowse link
G LOC101971629 core histone macro-H2A.1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936597:2,496,489...2,556,352 JBrowse link
G Morc2 MORC family CW-type zinc finger 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936755:133,315...171,507 JBrowse link
G Mphosph8 M-phase phosphoprotein 8 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936720:1,972,063...2,025,283 JBrowse link
G Pphln1 periphilin 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936512:1,001,733...1,158,647 JBrowse link
G Ppm1d protein phosphatase, Mg2+/Mn2+ dependent 1D involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936490:2,139,201...2,183,850 JBrowse link
G Rif1 replication timing regulatory factor 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936469:26,045,500...26,105,980 JBrowse link
G Sirt6 sirtuin 6 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936588:2,387,162...2,394,066 JBrowse link
G Smyd5 SMYD family member 5 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936491:16,997,962...17,011,470 JBrowse link
G Spi1 Spi-1 proto-oncogene involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936562:1,852,759...1,870,647 JBrowse link
G Tasor transcription activation suppressor involved_in ISO (PMID:26022416), (PMID:28581500), (PMID:29211708) UniProt PMID:26022416 PMID:28581500 PMID:29211708 NCBI chrNW_004936473:7,053,797...7,098,608 JBrowse link
G Trim27 tripartite motif containing 27 acts_upstream_of_or_within
involved_in
ISO
IEA
(PMID:10976108) MGI
Ensembl
PMID:10976108 GO_REF:0000107 NCBI chrNW_004936914:245,348...263,060 JBrowse link
negative regulation of ribosomal DNA heterochromatin assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Phf2 PHD finger protein 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936487:2,912,114...2,956,429 JBrowse link
G Phf8 PHD finger protein 8 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936751:850,630...935,382 JBrowse link
pericentric heterochromatin assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cenpv centromere protein V involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936821:267,137...276,969 JBrowse link
G Dicer1 dicer 1, ribonuclease III acts_upstream_of_or_within ISO (MGI:3528782|PMID:15713842) MGI PMID:15713842 MGI:3528782 NCBI chrNW_004936846:528,768...584,599 JBrowse link
G Hells helicase, lymphoid specific involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936601:626,354...662,477 JBrowse link
G LOC101963041 histone H3.3A acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:5694896|PMID:26159997) MGI
Ensembl
PMID:26159997 GO_REF:0000107 MGI:5694896 NCBI chrNW_004936526:2,835,002...2,842,328 JBrowse link
G LOC101963257 histone H3.3A acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:5694896|PMID:26159997) MGI
Ensembl
PMID:26159997 GO_REF:0000107 MGI:5694896 NCBI chrNW_004936594:959,493...961,703 JBrowse link
positive regulation of DNA methylation-dependent heterochromatin assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dnmt1 DNA methyltransferase 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936659:520,181...565,496 JBrowse link
G LOC101978700 activating transcription factor 7 interacting protein involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936587:2,922,855...3,026,773 JBrowse link
G Morc2 MORC family CW-type zinc finger 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936755:133,315...171,507 JBrowse link
G Mphosph8 M-phase phosphoprotein 8 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936720:1,972,063...2,025,283 JBrowse link
G Pphln1 periphilin 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936512:1,001,733...1,158,647 JBrowse link
G Resf1 retroelement silencing factor 1 involved_in ISO (MGI:6271895|PMID:29728365) UniProt PMID:29728365 MGI:6271895 NCBI chrNW_004936607:4,247,824...4,274,410 JBrowse link
G Setdb1 SET domain bifurcated histone lysine methyltransferase 1 involved_in ISO (PMID:24623306), (PMID:27732843)
(MGI:5440670|PMID:20164836), (MGI:6271895|PMID:29728365)
UniProt PMID:20164836 PMID:24623306 PMID:27732843 PMID:29728365 MGI:5440670 MGI:6271895 NCBI chrNW_004936580:1,146,286...1,192,842 JBrowse link
G Tasor transcription activation suppressor involved_in ISO (PMID:28581500), (PMID:29211708) UniProt PMID:28581500 PMID:29211708 NCBI chrNW_004936473:7,053,797...7,098,608 JBrowse link
G Trim28 tripartite motif containing 28 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004937062:126,832...132,938 JBrowse link
G Znf304 zinc finger protein 304 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936897:244,051...253,580 JBrowse link
positive regulation of heterochromatin assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cdk2 cyclin dependent kinase 2 involved_in ISO (PMID:20935635) UniProt PMID:20935635 NCBI chrNW_004936646:379,849...385,648 JBrowse link
G Sin3a SIN3 transcription regulator family member A involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936471:34,206,084...34,260,538 JBrowse link
G Tpr translocated promoter region, nuclear basket protein involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936481:4,050,693...4,111,682 JBrowse link
random inactivation of X chromosome term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cdyl chromodomain Y like involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936534:7,525,618...7,601,184 JBrowse link
G Rlim ring finger protein, LIM domain interacting involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936683:930,537...961,792 JBrowse link
rDNA heterochromatin assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Baz2a bromodomain adjacent to zinc finger domain 2A acts_upstream_of_or_within
involved_in
ISO (MGI:3653583|PMID:16678107)
(MGI:4462332|PMID:20168299)
(MGI:3587127|PMID:16085498), (MGI:3852313|PMID:12198165), (MGI:3852588|PMID:19578370)
MGI
UniProt
PMID:12198165 PMID:16085498 PMID:16678107 PMID:19578370 PMID:20168299 MGI:3587127 MGI:3653583 MGI:3852313 MGI:3852588 MGI:4462332 NCBI chrNW_004936646:914,944...949,057 JBrowse link
G Bend3 BEN domain containing 3 involved_in IEA InterPro
Ensembl
GO_REF:0000002 GO_REF:0000107 NCBI chrNW_004936564:3,495,020...3,513,684 JBrowse link
G Rrp8 ribosomal RNA processing 8 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936842:656,508...661,894 JBrowse link
G Sirt1 sirtuin 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936521:10,296,097...10,316,673 JBrowse link
G Smarca5 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936535:4,857,816...4,890,266 JBrowse link
G Suv39h1 SUV39H1 histone lysine methyltransferase involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936721:646,778...661,144 JBrowse link
G Ubtf upstream binding transcription factor acts_upstream_of_or_within ISO (MGI:3836497|PMID:19103806) MGI PMID:19103806 MGI:3836497 NCBI chrNW_004936541:671,178...687,485 JBrowse link
regulation of DNA methylation-dependent heterochromatin assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Kdm1a lysine demethylase 1A involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936474:8,262,913...8,319,089 JBrowse link
G L3mbtl3 L3MBTL histone methyl-lysine binding protein 3 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936790:1,210,842...1,298,577 JBrowse link
G Pou5f1 POU class 5 homeobox 1 involved_in ISO (PMID:19736317) BHF-UCL PMID:19736317 NCBI chrNW_004936837:827,568...838,933 JBrowse link
G Samd1 sterile alpha motif domain containing 1 involved_in ISO (PMID:33980486) UniProt PMID:33980486 NCBI chrNW_004936659:2,744,967...2,750,135 JBrowse link
regulation of dosage compensation by inactivation of X chromosome term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Hcfc1 host cell factor C1 involved_in ISO (MGI:6207704|PMID:24842875) ComplexPortal PMID:24842875 MGI:6207704 NCBI chrNW_004936809:827,008...853,689 JBrowse link
G Kansl1 KAT8 regulatory NSL complex subunit 1 involved_in ISO (MGI:6207704|PMID:24842875) ComplexPortal PMID:24842875 MGI:6207704 NCBI chrNW_004936541:2,480,097...2,677,693 JBrowse link
G Kansl2 KAT8 regulatory NSL complex subunit 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936512:6,537,499...6,558,124 JBrowse link
G Kansl3 KAT8 regulatory NSL complex subunit 3 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936744:565,950...606,654 JBrowse link
G Kat8 lysine acetyltransferase 8 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936501:13,475,676...13,487,617 JBrowse link
G Mcrs1 microspherule protein 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936512:7,277,739...7,287,389 JBrowse link
G Msl1 MSL complex subunit 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936490:15,236,087...15,249,661 JBrowse link
G Msl2 MSL complex subunit 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936529:9,035,198...9,068,567 JBrowse link
G Msl3 MSL complex subunit 3 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936470:1,572,037...1,587,002 JBrowse link
G Ogt O-linked N-acetylglucosamine (GlcNAc) transferase involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936762:99,335...137,833 JBrowse link
G Phf20 PHD finger protein 20 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936561:4,955,548...5,082,154 JBrowse link
G Rlim ring finger protein, LIM domain interacting acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:5581575|PMID:24613346) MGI
Ensembl
PMID:24613346 GO_REF:0000107 MGI:5581575 NCBI chrNW_004936683:930,537...961,792 JBrowse link
G Wdr5 WD repeat domain 5 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936669:2,943,759...2,959,788 JBrowse link
regulation of gene expression by genomic imprinting term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Arid4a AT-rich interaction domain 4A acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:3686546|PMID:17043311) MGI
Ensembl
PMID:17043311 GO_REF:0000107 MGI:3686546 NCBI chrNW_004936495:2,690,231...2,762,213 JBrowse link
G Arid4b AT-rich interaction domain 4B acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:3686546|PMID:17043311) MGI
Ensembl
PMID:17043311 GO_REF:0000107 MGI:3686546 NCBI chrNW_004936484:17,116,304...17,257,640 JBrowse link
G Brca1 BRCA1 DNA repair associated involved_in ISO (MGI:5009779|PMID:20820192) BHF-UCL PMID:20820192 MGI:5009779 NCBI chrNW_004936490:17,735,444...17,801,456 JBrowse link
G Ctcf CCCTC-binding factor acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:3044090|PMID:14716017)
(MGI:2450195|PMID:12461525), (MGI:3045676|PMID:15143173)
MGI
Ensembl
PMID:12461525 PMID:14716017 PMID:15143173 GO_REF:0000107 MGI:2450195 MGI:3044090 MGI:3045676 NCBI chrNW_004936475:17,987,137...18,031,733 JBrowse link
G Ctcfl CCCTC-binding factor like involved_in ISO (MGI:3692841|PMID:17048991) UniProt PMID:17048991 MGI:3692841 NCBI chrNW_004936530:312,630...335,929 JBrowse link
G Dnmt3a DNA methyltransferase 3 alpha acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:3045942|PMID:15215868)
(MGI:2178074|PMID:11934864)
MGI
Ensembl
PMID:11934864 PMID:15215868 GO_REF:0000107 MGI:2178074 MGI:3045942 NCBI chrNW_004936493:6,963,406...7,013,256 JBrowse link
G Dnmt3b DNA methyltransferase 3 beta acts_upstream_of_or_within ISO (MGI:2178074|PMID:11934864) MGI PMID:11934864 MGI:2178074 NCBI chrNW_004936485:19,547,836...19,570,716 JBrowse link
G Eed embryonic ectoderm development acts_upstream_of_or_within ISO (MGI:2655036|PMID:12627233) MGI PMID:12627233 MGI:2655036 NCBI chrNW_004936498:14,050,731...14,082,410 JBrowse link
G Gsk3a glycogen synthase kinase 3 alpha involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936706:266,462...277,256 JBrowse link
G Gsk3b glycogen synthase kinase 3 beta involved_in ISO (MGI:5009774|PMID:21047779) BHF-UCL PMID:21047779 MGI:5009774 NCBI chrNW_004936536:6,730,070...6,893,818 JBrowse link
G Kcnq1 potassium voltage-gated channel subfamily Q member 1 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:2389526|PMID:12410230)
(MGI:3054495|PMID:15340049)
MGI
Ensembl
PMID:12410230 PMID:15340049 GO_REF:0000107 MGI:2389526 MGI:3054495 NCBI chrNW_004936794:707,122...994,206 JBrowse link
G Kdm1b lysine demethylase 1B acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:4358629|PMID:19727073) MGI
Ensembl
PMID:19727073 GO_REF:0000107 MGI:4358629 NCBI chrNW_004936552:3,921,217...3,964,281 JBrowse link
G Mecp2 methyl-CpG binding protein 2 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:3530434|PMID:15608638)
(PMID:15608638)
MGI
Ensembl
PMID:15608638 GO_REF:0000107 MGI:3530434 NCBI chrNW_004936809:902,938...967,771 JBrowse link
G Prmt7 protein arginine methyltransferase 7 involved_in IEA UniProt
Ensembl
GO_REF:0000104 GO_REF:0000107 NCBI chrNW_004936475:18,632,022...18,667,515 JBrowse link
G Zfp57 ZFP57 zinc finger protein involved_in
acts_upstream_of_or_within
ISO (PMID:18622393)
(MGI:6506156|PMID:33500348)
(MGI:3826319|PMID:18854139)
UniProt
MGI
PMID:18622393 PMID:18854139 PMID:33500348 MGI:3826319 MGI:6506156 NCBI chrNW_004936723:1,063,969...1,069,986 JBrowse link
regulation of genetic imprinting term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ctr9 CTR9 homolog, Paf1/RNA polymerase II complex component acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:5528755|PMID:24036311) MGI
Ensembl
PMID:24036311 GO_REF:0000107 MGI:5528755 NCBI chrNW_004936528:7,585,937...7,613,022 JBrowse link
G Pik3ca phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit alpha involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936566:3,924,013...3,951,052 JBrowse link
G Trim28 tripartite motif containing 28 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:5319411|PMID:22495301) MGI
Ensembl
PMID:22495301 GO_REF:0000107 MGI:5319411 NCBI chrNW_004937062:126,832...132,938 JBrowse link
G Zfp42 ZFP42 zinc finger protein acts_upstream_of_or_within ISO (MGI:4940138|PMID:21233130) MGI PMID:21233130 MGI:4940138 NCBI chrNW_004936554:1,786,355...1,787,125 JBrowse link
G Zfp57 ZFP57 zinc finger protein involved_in ISO (MGI:6284037|PMID:30602440) UniProt PMID:30602440 MGI:6284037 NCBI chrNW_004936723:1,063,969...1,069,986 JBrowse link
G Znf445 zinc finger protein 445 involved_in ISO (PMID:30602440)
(MGI:6284037|PMID:30602440)
UniProt PMID:30602440 MGI:6284037 NCBI chrNW_004936695:1,066,703...1,087,289 JBrowse link
regulation of ribosomal DNA heterochromatin assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G LOC101971629 core histone macro-H2A.1 NOT|involved_in ISO (PMID:24071584) UniProt PMID:24071584 NCBI chrNW_004936597:2,496,489...2,556,352 JBrowse link
subtelomeric heterochromatin assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ezh1 enhancer of zeste 1 polycomb repressive complex 2 subunit involved_in ISO (MGI:892875|PMID:9214638) ARUK-UCL PMID:9214638 MGI:892875 NCBI chrNW_004936490:17,430,383...17,465,889 JBrowse link
G Ezh2 enhancer of zeste 2 polycomb repressive complex 2 subunit involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936527:5,024,077...5,069,152 JBrowse link
G LOC101963041 histone H3.3A acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:5694896|PMID:26159997) MGI
Ensembl
PMID:26159997 GO_REF:0000107 MGI:5694896 NCBI chrNW_004936526:2,835,002...2,842,328 JBrowse link
G LOC101963257 histone H3.3A acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:5694896|PMID:26159997) MGI
Ensembl
PMID:26159997 GO_REF:0000107 MGI:5694896 NCBI chrNW_004936594:959,493...961,703 JBrowse link
G Rif1 replication timing regulatory factor 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936469:26,045,500...26,105,980 JBrowse link
G Sirt6 sirtuin 6 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936588:2,387,162...2,394,066 JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 14953
    cellular process 14088
      cellular component organization or biogenesis 5445
        cellular component organization 5316
          chromatin organization 414
            regulation of gene expression, epigenetic 140
              dosage compensation + 32
              epigenetic maintenance of chromatin in transcription-competent conformation 11
              negative regulation of gene expression, epigenetic + 80
              regulation of gene expression by genomic imprinting + 17
              transvection 0
Path 2
Term Annotations click to browse term
  biological_process 14953
    cellular process 14088
      cellular component organization or biogenesis 5445
        cellular component organization 5316
          organelle organization 3241
            chromosome organization 798
              chromatin organization 414
                regulation of gene expression, epigenetic 140
                  dosage compensation + 32
                  epigenetic maintenance of chromatin in transcription-competent conformation 11
                  negative regulation of gene expression, epigenetic + 80
                  regulation of gene expression by genomic imprinting + 17
                  transvection 0
paths to the root