Send us a Message



Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   

ONTOLOGY REPORT - ANNOTATIONS


Term:regulation of gene expression, epigenetic
go back to main search page
Accession:GO:0040029 term browser browse the term
Definition:A process that modulates the frequency, rate or extent of gene expression by remodelling of chromatin by either modifying the chromatin fiber, the nucleosomal histones, or the DNA. Once established, this regulation may be maintained over many cell divisions. It can also be heritable in the absence of the instigating signal.



show annotations for term's descendants           Sort by:
 
regulation of gene expression, epigenetic term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ASIP agouti signaling protein acts_upstream_of_or_within ISO (MGI:2652932|PMID:12601169) MGI PMID:12601169 MGI:2652932 NCBI chr24:23,338,757...23,393,913
Ensembl chr24:23,354,888...23,393,896
JBrowse link
G CGGBP1 CGG triplet repeat binding protein 1 involved_in IEA Ensembl
Ensembl
GO_REF:0000107 NCBI chr31:207,383...214,075
Ensembl chr31:210,547...211,050
JBrowse link
G CTCF CCCTC-binding factor involved_in IBA (PMID:21873635) GO_Central
GO_Central
PMID:21873635 NCBI chr 5:81,808,512...81,863,811
Ensembl chr 5:81,809,393...81,858,655
JBrowse link
G GLMN glomulin, FKBP associated protein involved_in IEA Ensembl
Ensembl
GO_REF:0000107 NCBI chr 6:56,631,186...56,678,397
Ensembl chr 6:56,644,456...56,678,399
JBrowse link
G GPX1 glutathione peroxidase 1 involved_in IEA Ensembl
Ensembl
GO_REF:0000107 NCBI chr20:39,889,165...39,890,253
Ensembl chr20:39,889,174...39,890,260
JBrowse link
G H3C1 H3 clustered histone 1 involved_in IEA Ensembl
Ensembl
GO_REF:0000107 NCBI chr35:23,975,775...23,977,803
Ensembl chr35:23,977,201...23,977,611
JBrowse link
G H3C12 H3 clustered histone 12 involved_in ISO (PMID:16267050) BHF-UCL PMID:16267050 NCBI chr35:25,058,040...25,060,132
Ensembl chr35:25,059,288...25,059,698
JBrowse link
G H3C2 H3 clustered histone 2 involved_in ISO (PMID:16267050) BHF-UCL PMID:16267050 NCBI chr35:23,989,431...23,989,871 JBrowse link
G H3C7 H3 clustered histone 7 involved_in IEA Ensembl
Ensembl
GO_REF:0000107 NCBI chr35:24,174,818...24,177,957
Ensembl chr35:24,177,521...24,177,931
JBrowse link
G HDAC4 histone deacetylase 4 involved_in ISO (PMID:24413532) UniProt PMID:24413532 NCBI chr25:49,318,621...49,545,314
Ensembl chr25:49,317,349...49,453,478
JBrowse link
G HDAC5 histone deacetylase 5 involved_in IEA InterPro
InterPro
GO_REF:0000002 NCBI chr 9:19,261,075...19,297,669
Ensembl chr 9:19,260,893...19,297,623
JBrowse link
G HDAC6 histone deacetylase 6 involved_in ISO (PMID:24413532) UniProt PMID:24413532 NCBI chr  X:42,004,268...42,024,726
Ensembl chr  X:42,004,591...42,024,427
JBrowse link
G KLF2 Kruppel like factor 2 acts_upstream_of_or_within ISO (MGI:5429781|PMID:22482507) MGI PMID:22482507 MGI:5429781 NCBI chr20:46,182,565...46,183,704 JBrowse link
G LOC488622 myeloid cell nuclear differentiation antigen involved_in ISO (PMID:24413532) UniProt PMID:24413532 NCBI chr38:22,874,345...22,892,362 JBrowse link
G MACROH2A1 macroH2A.1 histone involved_in IEA Ensembl GO_REF:0000107 NCBI chr11:23,369,957...23,448,235
Ensembl chr11:23,370,300...23,438,219
JBrowse link
G MECP2 methyl-CpG binding protein 2 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:3789859|PMID:17532643)
(MGI:3576944|PMID:15757975)
MGI
Ensembl
PMID:15757975 PMID:17532643 GO_REF:0000107 MGI:3576944 MGI:3789859 NCBI chr  X:121,866,721...121,876,088
Ensembl chr  X:121,873,218...121,932,994
JBrowse link
G MIR127 microRNA mir-127 acts_upstream_of_or_within ISO (MGI:3831054|PMID:19126398)
(MGI:5661605|PMID:26138477)
MGI PMID:19126398 PMID:26138477 MGI:3831054 MGI:5661605 NCBI chr 8:69,104,938...69,104,997
Ensembl chr 8:69,104,906...69,105,016
JBrowse link
G MIR136 microRNA mir-136 acts_upstream_of_or_within ISO (MGI:3831054|PMID:19126398) MGI PMID:19126398 MGI:3831054 NCBI chr 8:69,106,615...69,106,670
Ensembl chr 8:69,106,598...69,106,687
JBrowse link
G MORC1 MORC family CW-type zinc finger 1 acts_upstream_of_or_within ISO (MGI:5694015|PMID:25503965) MGI PMID:25503965 MGI:5694015 NCBI chr33:14,120,370...14,302,995
Ensembl chr33:14,147,504...14,291,024
JBrowse link
G MTA1 metastasis associated 1 involved_in ISO (PMID:24413532) UniProt PMID:24413532 NCBI chr 8:72,752,894...72,772,236
Ensembl chr 8:72,753,178...72,772,762
JBrowse link
G PRDM14 PR/SET domain 14 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:5429781|PMID:22482507) MGI
Ensembl
PMID:22482507 GO_REF:0000107 MGI:5429781 NCBI chr29:19,203,798...19,220,149
Ensembl chr29:19,203,807...19,220,518
JBrowse link
G TDG thymine DNA glycosylase involved_in ISO (MGI:5141157|PMID:21722948), (MGI:5487523|PMID:21278727) UniProt PMID:21278727 PMID:21722948 MGI:5141157 MGI:5487523 NCBI chr15:42,493,593...42,516,868
Ensembl chr15:42,493,737...42,515,448
JBrowse link
G TFAP2C transcription factor AP-2 gamma involved_in ISO (PMID:24413532) UniProt PMID:24413532 NCBI chr24:41,787,477...41,797,446
Ensembl chr24:41,783,490...41,796,509
JBrowse link
G ZNF335 zinc finger protein 335 involved_in ISO (PMID:23178126) UniProt PMID:23178126 NCBI chr24:33,226,636...33,246,496
Ensembl chr24:33,226,688...33,245,901
JBrowse link
DNA methylation-dependent heterochromatin assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G DNMT1 DNA methyltransferase 1 involved_in ISO (MGI:3687778|PMID:10615135) UniProt PMID:10615135 MGI:3687778 NCBI chr20:50,872,213...50,928,352
Ensembl chr20:50,879,527...50,928,029
JBrowse link
G DNMT3A DNA methyltransferase 3 alpha acts_upstream_of_or_within ISO (MGI:3768461|PMID:17938196)
(MGI:3611125|PMID:16322236)
MGI PMID:16322236 PMID:17938196 MGI:3611125 MGI:3768461 NCBI chr17:19,489,524...19,563,074
Ensembl chr17:19,492,193...19,563,902
JBrowse link
G DNMT3B DNA methyltransferase 3 beta acts_upstream_of_or_within ISO (MGI:3768461|PMID:17938196) MGI PMID:17938196 MGI:3768461 NCBI chr24:22,096,386...22,123,378
Ensembl chr24:22,096,349...22,122,900
JBrowse link
G HDAC1 histone deacetylase 1 involved_in IEA Ensembl
Ensembl
GO_REF:0000107 NCBI chr 2:68,901,339...68,936,473
Ensembl chr 2:68,901,651...68,936,186
JBrowse link
G HELLS helicase, lymphoid specific involved_in IBA
IEA
(PMID:21873635) GO_Central
Ensembl
GO_Central
PMID:21873635 GO_REF:0000107 NCBI chr28:8,660,866...8,705,570
Ensembl chr28:8,661,008...8,705,580
JBrowse link
G KMT2B lysine methyltransferase 2B acts_upstream_of_or_within ISO (MGI:4849597|PMID:20808952) MGI PMID:20808952 MGI:4849597 NCBI chr 1:116,894,024...116,913,464
Ensembl chr 1:116,893,074...116,913,472
JBrowse link
G MBD2 methyl-CpG binding domain protein 2 involved_in ISO (PMID:23770133) BHF-UCL PMID:23770133 NCBI chr 1:21,232,260...21,283,687
Ensembl chr 1:21,235,967...21,283,346
JBrowse link
G MBD3 methyl-CpG binding domain protein 3 acts_upstream_of_or_within ISO (MGI:3611125|PMID:16322236) MGI PMID:16322236 MGI:3611125 NCBI chr20:57,296,713...57,312,988
Ensembl chr20:57,296,713...57,307,110
JBrowse link
G SMARCA4 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4 acts_upstream_of_or_within ISO (MGI:3611125|PMID:16322236) MGI PMID:16322236 MGI:3611125 NCBI chr20:50,175,489...50,268,865
Ensembl chr20:50,175,687...50,268,836
JBrowse link
dosage compensation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G MACROH2A1 macroH2A.1 histone acts_upstream_of_or_within
involved_in
ISO
IEA
(PMID:15053874) MGI
Ensembl
Ensembl
PMID:15053874 GO_REF:0000107 NCBI chr11:23,369,957...23,448,235
Ensembl chr11:23,370,300...23,438,219
JBrowse link
G MACROH2A2 macroH2A.2 histone acts_upstream_of_or_within
involved_in
ISO
IEA
(PMID:11331621) MGI
Ensembl
Ensembl
PMID:11331621 GO_REF:0000107 NCBI chr 4:21,057,935...21,087,097
Ensembl chr 4:21,057,947...21,086,730
JBrowse link
dosage compensation by inactivation of X chromosome term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G BRCA1 BRCA1 DNA repair associated involved_in
acts_upstream_of_or_within
IBA
IEA
ISO
(PMID:21873635)
(MGI:2389513|PMID:12419249)
GO_Central
Ensembl
GO_Central
Ensembl
MGI
PMID:12419249 PMID:21873635 GO_REF:0000107 MGI:2389513 NCBI chr 9:19,958,941...20,025,494
Ensembl chr 9:19,958,391...20,025,494
JBrowse link
G EIF1 eukaryotic translation initiation factor 1 acts_upstream_of_or_within ISO (MGI:3694307|PMID:16789828) MGI PMID:16789828 MGI:3694307 NCBI chr 9:21,098,869...21,101,612
Ensembl chr 9:21,098,869...21,102,603
JBrowse link
G EXOSC10 exosome component 10 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:3694307|PMID:16789828) MGI
Ensembl
Ensembl
PMID:16789828 GO_REF:0000107 MGI:3694307 NCBI chr 2:84,942,801...84,964,129
Ensembl chr 2:84,942,777...84,964,130
JBrowse link
G HNRNPU heterogeneous nuclear ribonucleoprotein U involved_in ISO (MGI:4831049|PMID:20833368) UniProt PMID:20833368 MGI:4831049 NCBI chr 7:35,832,956...35,842,898
Ensembl chr 7:35,833,988...35,843,754
JBrowse link
G JARID2 jumonji and AT-rich interaction domain containing 2 acts_upstream_of_or_within ISO (MGI:5888829|PMID:27892467) MGI PMID:27892467 MGI:5888829 NCBI chr35:14,476,656...14,737,535
Ensembl chr35:14,445,914...14,736,158
JBrowse link
G LRIF1 ligand dependent nuclear receptor interacting factor 1 involved_in IEA Ensembl
Ensembl
GO_REF:0000107 NCBI chr 6:41,023,383...41,041,776
Ensembl chr 6:41,023,787...41,039,844
JBrowse link
G METTL3 methyltransferase 3, N6-adenosine-methyltransferase complex catalytic subunit involved_in IEA Ensembl
Ensembl
GO_REF:0000107 NCBI chr15:18,528,755...18,546,303
Ensembl chr15:18,528,772...18,546,531
JBrowse link
G RBM15 RNA binding motif protein 15 involved_in IEA Ensembl
Ensembl
GO_REF:0000107 NCBI chr 6:41,645,765...41,653,621
Ensembl chr 6:41,645,769...41,653,799
JBrowse link
G RBM15B RNA binding motif protein 15B involved_in ISO (PMID:27602518) UniProt PMID:27602518 NCBI chr20:38,191,079...38,194,150
Ensembl chr20:38,191,439...38,192,730
JBrowse link
G SMCHD1 structural maintenance of chromosomes flexible hinge domain containing 1 involved_in
acts_upstream_of_or_within
ISO (PMID:23542155)
(MGI:3821390|PMID:18425126), (MGI:5532809|PMID:23754746)
UniProt
MGI
PMID:18425126 PMID:23542155 PMID:23754746 MGI:3821390 MGI:5532809 NCBI chr 7:69,359,286...69,505,067
Ensembl chr 7:69,358,447...69,621,067
JBrowse link
G SUZ12 SUZ12 polycomb repressive complex 2 subunit acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:5888829|PMID:27892467) MGI
Ensembl
Ensembl
PMID:27892467 GO_REF:0000107 MGI:5888829 NCBI chr 9:40,992,797...41,038,729
Ensembl chr 9:40,994,825...41,038,645
JBrowse link
G UPF1 UPF1 RNA helicase and ATPase involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:3694307|PMID:16789828) Ensembl
Ensembl
MGI
PMID:16789828 GO_REF:0000107 MGI:3694307 NCBI chr20:44,234,411...44,271,129
Ensembl chr20:44,236,264...44,270,916
JBrowse link
G YTHDC1 YTH domain containing 1 involved_in ISO (PMID:27602518) UniProt PMID:27602518 NCBI chr13:58,818,424...58,858,241
Ensembl chr13:58,818,796...58,857,571
JBrowse link
epigenetic maintenance of chromatin in transcription-competent conformation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CDCA4 cell division cycle associated 4 involved_in IBA (PMID:21873635) GO_Central
GO_Central
PMID:21873635 NCBI chr 8:72,457,671...72,465,630
Ensembl chr 8:72,458,160...72,465,767
JBrowse link
G CHEK1 checkpoint kinase 1 involved_in ISO (MGI:5294291|PMID:18243098) UniProt PMID:18243098 MGI:5294291 NCBI chr 5:8,878,511...8,910,626
Ensembl chr 5:8,879,147...8,907,669
JBrowse link
G EP300 E1A binding protein p300 involved_in ISO (PMID:25818647) UniProt PMID:25818647 NCBI chr10:24,076,538...24,156,708
Ensembl chr10:24,077,971...24,156,396
JBrowse link
G FAM47E family with sequence similarity 47 member E involved_in ISO (PMID:33376131) ARUK-UCL PMID:33376131 NCBI chr32:904,947...930,985 JBrowse link
G MACROH2A1 macroH2A.1 histone involved_in IEA Ensembl
Ensembl
GO_REF:0000107 NCBI chr11:23,369,957...23,448,235
Ensembl chr11:23,370,300...23,438,219
JBrowse link
G NR3C1 nuclear receptor subfamily 3 group C member 1 involved_in ISO PMID:12917342 UniProt PMID:12917342 RGD:8553888 NCBI chr 2:38,124,568...38,242,510
Ensembl chr 2:38,123,190...38,240,755
JBrowse link
G PABPC1L poly(A) binding protein cytoplasmic 1 like acts_upstream_of_or_within ISO (MGI:5688228|PMID:26134869) MGI PMID:26134869 MGI:5688228 NCBI chr24:32,327,479...32,348,964
Ensembl chr24:32,327,494...32,349,071
JBrowse link
G PADI2 peptidyl arginine deiminase 2 involved_in ISO (PMID:22853951) UniProt PMID:22853951 NCBI chr 2:81,116,031...81,147,889
Ensembl chr 2:81,116,140...81,145,043
JBrowse link
G PHF2 PHD finger protein 2 involved_in ISO (MGI:6716956|PMID:22921934) UniProt PMID:22921934 MGI:6716956 NCBI chr 1:98,188,014...98,253,930
Ensembl chr 1:98,188,826...98,254,411
JBrowse link
G SERTAD1 SERTA domain containing 1 involved_in IBA (PMID:21873635) GO_Central
GO_Central
PMID:21873635 NCBI chr 1:113,270,199...113,273,112
Ensembl chr 1:113,272,051...113,272,764
JBrowse link
G SMARCD1 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 1 involved_in ISO (PMID:12917342) UniProt PMID:12917342 NCBI chr27:4,624,962...4,640,229
Ensembl chr27:4,626,056...4,637,907
JBrowse link
G SPHK2 sphingosine kinase 2 involved_in ISO (PMID:19729656) UniProt PMID:19729656 NCBI chr 1:107,681,425...107,689,790
Ensembl chr 1:107,680,599...107,689,707
JBrowse link
G WBP2 WW domain binding protein 2 involved_in IEA InterPro
Ensembl
InterPro
Ensembl
GO_REF:0000002 GO_REF:0000107 NCBI chr 9:4,743,476...4,752,301
Ensembl chr 9:4,743,539...4,752,270
JBrowse link
G ZMIZ1 zinc finger MIZ-type containing 1 involved_in IBA (PMID:21873635) GO_Central
GO_Central
PMID:21873635 NCBI chr 4:28,807,368...29,035,946
Ensembl chr 4:28,854,908...29,045,986
JBrowse link
G ZMIZ2 zinc finger MIZ-type containing 2 involved_in IBA (PMID:21873635) GO_Central
GO_Central
PMID:21873635
genomic imprinting term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ASIP agouti signaling protein acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:2652932|PMID:12601169) MGI
Ensembl
Ensembl
PMID:12601169 GO_REF:0000107 MGI:2652932 NCBI chr24:23,338,757...23,393,913
Ensembl chr24:23,354,888...23,393,896
JBrowse link
G AXIN1 axin 1 acts_upstream_of_or_within ISO (MGI:2652932|PMID:12601169) MGI PMID:12601169 MGI:2652932 NCBI chr 6:40,155,797...40,218,330
Ensembl chr 6:40,158,244...40,218,343
JBrowse link
G CDKN1C cyclin dependent kinase inhibitor 1C acts_upstream_of_or_within ISO (MGI:3839493|PMID:19276117) MGI PMID:19276117 MGI:3839493 NCBI chr18:46,860,636...46,861,697 JBrowse link
G CTCF CCCTC-binding factor involved_in ISO (PMID:17827499) GO_Central PMID:17827499 NCBI chr 5:81,808,512...81,863,811
Ensembl chr 5:81,809,393...81,858,655
JBrowse link
G DNMT3L DNA methyltransferase 3 like acts_upstream_of_or_within ISO (MGI:3663953|PMID:16920095) MGI PMID:16920095 MGI:3663953 NCBI chr31:38,099,100...38,111,432 JBrowse link
G GNAS GNAS complex locus acts_upstream_of_or_within ISO (MGI:4454202|PMID:20427744) MGI PMID:20427744 MGI:4454202 NCBI chr24:43,643,409...43,658,641
Ensembl chr24:43,643,405...43,658,657
JBrowse link
G NDN necdin, MAGE family member involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:1345919|PMID:10508517) Ensembl
Ensembl
MGI
PMID:10508517 GO_REF:0000107 MGI:1345919 NCBI chr 3:36,313,977...36,315,661
Ensembl chr 3:36,314,104...36,315,081
JBrowse link
G ZDBF2 zinc finger DBF-type containing 2 acts_upstream_of_or_within ISO (MGI:6151717|PMID:27841881) MGI PMID:27841881 MGI:6151717 NCBI chr37:14,867,344...14,897,552
Ensembl chr37:14,871,575...14,894,047
JBrowse link
G ZFP57 ZFP57 zinc finger protein acts_upstream_of_or_within ISO (MGI:6506156|PMID:33500348) MGI PMID:33500348 MGI:6506156 NCBI chr35:26,267,358...26,269,429 JBrowse link
heterochromatin assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G BAHD1 bromo adjacent homology domain containing 1 involved_in ISO (PMID:19666599) UniProt PMID:19666599 NCBI chr30:7,609,087...7,638,880
Ensembl chr30:7,613,345...7,638,880
JBrowse link
G BAZ2A bromodomain adjacent to zinc finger domain 2A acts_upstream_of_or_within ISO (MGI:3653583|PMID:16678107)
(MGI:4462332|PMID:20168299)
MGI PMID:16678107 PMID:20168299 MGI:3653583 MGI:4462332 NCBI chr10:834,018...868,817
Ensembl chr10:836,465...863,874
JBrowse link
G BMI1 BMI1 proto-oncogene, polycomb ring finger involved_in IBA (PMID:21873635) GO_Central
GO_Central
PMID:21873635 NCBI chr 2:10,818,232...10,828,473
Ensembl chr 2:10,818,232...10,833,613
JBrowse link
G CBX3 chromobox 3 involved_in IEA Ensembl
Ensembl
GO_REF:0000107 NCBI chr14:39,510,694...39,520,796
Ensembl chr14:39,510,112...39,519,809
JBrowse link
G CTBP1 C-terminal binding protein 1 involved_in ISO (PMID:21102443) BHF-UCL PMID:21102443 NCBI chr 3:91,385,733...91,400,252
Ensembl chr 3:91,379,049...91,400,656
JBrowse link
G EED embryonic ectoderm development involved_in IBA (PMID:21873635) GO_Central
GO_Central
PMID:21873635 NCBI chr21:13,260,062...13,289,511
Ensembl chr21:13,260,002...13,289,337
JBrowse link
G EZH1 enhancer of zeste 1 polycomb repressive complex 2 subunit involved_in ISO (MGI:3820717|PMID:19026781) ARUK-UCL PMID:19026781 MGI:3820717 NCBI chr 9:20,271,729...20,292,918
Ensembl chr 9:20,264,552...20,290,712
JBrowse link
G H1-0 H1.0 linker histone involved_in IEA Ensembl
Ensembl
GO_REF:0000107 NCBI chr10:26,827,748...26,829,909
Ensembl chr10:26,829,089...26,829,673
JBrowse link
G H2AB1 H2A.B variant histone 1 involved_in IBA (PMID:21873635) GO_Central
GO_Central
PMID:21873635 NCBI chr  X:122,910,412...122,913,373
Ensembl chr  X:122,910,968...122,913,382
JBrowse link
G H2AC1 H2A clustered histone 1 involved_in IBA (PMID:21873635) GO_Central
GO_Central
PMID:21873635 NCBI chr35:23,677,141...23,677,728
Ensembl chr35:23,677,318...23,677,713
JBrowse link
G H2AC11 H2A clustered histone 11 involved_in IBA (PMID:21873635) GO_Central
GO_Central
PMID:21873635 NCBI chr35:24,544,024...24,544,645
Ensembl chr35:24,544,083...24,544,475
JBrowse link
G H2AC12 H2A clustered histone 12 involved_in IBA (PMID:21873635) GO_Central
GO_Central
PMID:21873635 NCBI chr35:24,558,456...24,559,356
Ensembl chr35:24,558,493...24,558,879
JBrowse link
G H2AC13 H2A clustered histone 13 involved_in IBA (PMID:21873635) GO_Central
GO_Central
PMID:21873635 NCBI chr35:25,000,243...25,001,749
Ensembl chr35:25,000,401...25,000,793
JBrowse link
G H2AC14 H2A clustered histone 14 involved_in IBA (PMID:21873635) GO_Central
GO_Central
PMID:21873635 NCBI chr35:25,004,598...25,006,416
Ensembl chr35:25,005,826...25,006,212
JBrowse link
G H2AC15 H2A clustered histone 15 involved_in IBA (PMID:21873635) GO_Central
GO_Central
PMID:21873635 NCBI chr35:25,030,215...25,031,023
Ensembl chr35:25,030,551...25,030,940
JBrowse link
G H2AC19 H2A clustered histone 19 involved_in IBA (PMID:21873635) GO_Central
GO_Central
PMID:21873635 NCBI chr17:59,156,821...59,157,523
Ensembl chr17:59,147,111...59,147,503
JBrowse link
G H2AC20 H2A clustered histone 20 involved_in IBA (PMID:21873635) GO_Central
GO_Central
PMID:21873635 NCBI chr17:59,175,488...59,176,178 JBrowse link
G H2AC21 H2A clustered histone 21 involved_in IBA (PMID:21873635) GO_Central
GO_Central
PMID:21873635 NCBI chr17:59,176,217...59,176,960
Ensembl chr17:59,176,251...59,176,643
JBrowse link
G H2AC5 H2A clustered histone 5 involved_in IBA (PMID:21873635) GO_Central
GO_Central
PMID:21873635 NCBI chr35:24,001,879...24,003,169
Ensembl chr35:24,001,900...24,002,292
JBrowse link
G H2AC6 H2A clustered histone 6 involved_in IBA (PMID:21873635) GO_Central
GO_Central
PMID:21873635 NCBI chr35:24,066,960...24,075,002
Ensembl chr35:24,067,113...24,067,505
JBrowse link
G H2AC7 H2A clustered histone 7 involved_in IBA (PMID:21873635) GO_Central
GO_Central
PMID:21873635 NCBI chr35:24,124,913...24,127,382
Ensembl chr35:24,124,802...24,127,252
JBrowse link
G H2AJ H2A.J histone involved_in IBA (PMID:21873635) GO_Central
GO_Central
PMID:21873635 NCBI chr27:31,835,433...31,836,150
Ensembl chr27:31,835,623...31,836,012
JBrowse link
G H2AW H2A.W histone involved_in IBA (PMID:21873635) GO_Central
GO_Central
PMID:21873635 NCBI chr14:604,444...605,584
Ensembl chr14:604,505...604,897
JBrowse link
G H2AX H2A.X variant histone involved_in IBA (PMID:21873635) GO_Central
GO_Central
PMID:21873635 NCBI chr 5:14,765,625...14,766,590
Ensembl chr 5:14,766,126...14,766,557
JBrowse link
G H2AZ1 H2A.Z variant histone 1 involved_in IBA (PMID:21873635) GO_Central
GO_Central
PMID:21873635 NCBI chr32:21,889,890...21,892,165
Ensembl chr32:21,889,877...21,892,102
JBrowse link
G H2AZ2 H2A.Z variant histone 2 involved_in IBA (PMID:21873635) GO_Central
GO_Central
PMID:21873635
G HELLS helicase, lymphoid specific acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:3510059|PMID:15448183) MGI
Ensembl
PMID:15448183 GO_REF:0000107 MGI:3510059 NCBI chr28:8,660,866...8,705,570
Ensembl chr28:8,661,008...8,705,580
JBrowse link
G HMGA2 high mobility group AT-hook 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr10:8,348,101...8,491,435 JBrowse link
G HOTAIR HOX transcript antisense RNA acts_upstream_of_or_within ISO (MGI:5528742|PMID:24075995) MGI PMID:24075995 MGI:5528742 NCBI chr27:1,296,506...1,300,023 JBrowse link
G KMT2D lysine methyltransferase 2D involved_in ISO (MGI:4849597|PMID:20808952) UniProt PMID:20808952 MGI:4849597 NCBI chr27:5,516,866...5,556,303
Ensembl chr27:5,521,804...5,553,490
JBrowse link
G L3MBTL1 L3MBTL histone methyl-lysine binding protein 1 involved_in ISO (PMID:17540172) ComplexPortal PMID:17540172 NCBI chr24:31,238,787...31,266,062
Ensembl chr24:31,217,184...31,265,291
JBrowse link
G MACROH2A1 macroH2A.1 histone involved_in IBA (PMID:21873635) GO_Central
GO_Central
PMID:21873635 NCBI chr11:23,369,957...23,448,235
Ensembl chr11:23,370,300...23,438,219
JBrowse link
G MACROH2A2 macroH2A.2 histone involved_in IBA (PMID:21873635) GO_Central
GO_Central
PMID:21873635 NCBI chr 4:21,057,935...21,087,097
Ensembl chr 4:21,057,947...21,086,730
JBrowse link
G MECP2 methyl-CpG binding protein 2 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:3530434|PMID:15608638) MGI
Ensembl
Ensembl
PMID:15608638 GO_REF:0000107 MGI:3530434 NCBI chr  X:121,866,721...121,876,088
Ensembl chr  X:121,873,218...121,932,994
JBrowse link
G MORF4L1 mortality factor 4 like 1 involved_in IBA (PMID:21873635) GO_Central
GO_Central
PMID:21873635 NCBI chr 3:58,127,152...58,149,709
Ensembl chr 3:58,127,669...58,193,005
JBrowse link
G MORF4L2 mortality factor 4 like 2 involved_in IBA (PMID:21873635) GO_Central
GO_Central
PMID:21873635 NCBI chr  X:77,084,940...77,097,900
Ensembl chr  X:77,085,599...77,086,465
JBrowse link
G MSL3 MSL complex subunit 3 involved_in IBA (PMID:21873635) GO_Central
GO_Central
PMID:21873635 NCBI chr  X:8,294,797...8,311,142
Ensembl chr  X:8,294,802...8,310,751
JBrowse link
G PCGF1 polycomb group ring finger 1 involved_in IBA (PMID:21873635) GO_Central
GO_Central
PMID:21873635 NCBI chr17:48,633,207...48,642,435
Ensembl chr17:48,633,332...48,635,554
JBrowse link
G PCGF2 polycomb group ring finger 2 involved_in IBA (PMID:21873635) GO_Central
GO_Central
PMID:21873635 NCBI chr 9:23,488,862...23,499,769
Ensembl chr 9:23,488,857...23,499,549
JBrowse link
G PCGF6 polycomb group ring finger 6 involved_in IBA (PMID:21873635) GO_Central
GO_Central
PMID:21873635 NCBI chr28:15,697,707...15,733,177
Ensembl chr28:15,605,040...15,733,097
JBrowse link
G POLE3 DNA polymerase epsilon 3, accessory subunit involved_in IBA (PMID:21873635) GO_Central
GO_Central
PMID:21873635 NCBI chr11:67,757,779...67,760,417
Ensembl chr11:67,758,918...67,760,374
JBrowse link
G PPM1D protein phosphatase, Mg2+/Mn2+ dependent 1D involved_in IEA Ensembl
Ensembl
GO_REF:0000107 NCBI chr 9:35,856,277...35,914,096
Ensembl chr 9:35,856,765...35,913,884
JBrowse link
G RB1 RB transcriptional corepressor 1 involved_in ISO (PMID:17540172) ComplexPortal PMID:17540172 NCBI chr22:3,061,621...3,204,625
Ensembl chr22:3,063,239...3,257,726
JBrowse link
G RBBP4 RB binding protein 4, chromatin remodeling factor involved_in IBA (PMID:21873635) GO_Central
GO_Central
PMID:21873635 NCBI chr 2:68,638,459...68,660,942
Ensembl chr 2:68,638,498...68,660,910
JBrowse link
G RBBP7 RB binding protein 7, chromatin remodeling factor involved_in IBA (PMID:21873635) GO_Central
GO_Central
PMID:21873635 NCBI chr  X:12,981,852...13,006,049
Ensembl chr  X:12,981,860...13,006,045
JBrowse link
G SIRT1 sirtuin 1 involved_in ISO (PMID:15469825) BHF-UCL PMID:15469825 NCBI chr 4:19,188,616...19,220,031
Ensembl chr 4:19,188,675...19,218,279
JBrowse link
G SMARCA5 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5 involved_in ISO (MGI:3653583|PMID:16678107) ComplexPortal PMID:16678107 MGI:3653583 NCBI chr15:42,731,147...42,771,577
Ensembl chr15:42,731,426...42,770,624
JBrowse link
G TNP1 transition protein 1 involved_in IEA Ensembl
Ensembl
GO_REF:0000107 NCBI chr37:23,742,875...23,743,417
Ensembl chr37:23,727,538...23,743,365
JBrowse link
G UBR2 ubiquitin protein ligase E3 component n-recognin 2 involved_in IBA
IEA
(PMID:21873635) GO_Central
Ensembl
GO_Central
PMID:21873635 GO_REF:0000107 NCBI chr12:11,167,286...11,296,817
Ensembl chr12:11,167,346...11,294,911
JBrowse link
heterochromatin assembly by small RNA term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G FAM172A family with sequence similarity 172 member A involved_in IBA (PMID:21873635) GO_Central
GO_Central
PMID:21873635 NCBI chr 3:15,281,442...15,695,303
Ensembl chr 3:15,281,448...15,694,715
JBrowse link
G ZNFX1 zinc finger NFX1-type containing 1 involved_in IBA (PMID:21873635) GO_Central
GO_Central
PMID:21873635 NCBI chr24:35,932,037...35,954,170
Ensembl chr24:35,932,523...35,954,170
JBrowse link
inactivation of paternal X chromosome term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G PRDM14 PR/SET domain 14 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:5548017|PMID:24268575) MGI
Ensembl
Ensembl
PMID:24268575 GO_REF:0000107 MGI:5548017 NCBI chr29:19,203,798...19,220,149
Ensembl chr29:19,203,807...19,220,518
JBrowse link
inactivation of X chromosome by genomic imprinting term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G PCGF3 polycomb group ring finger 3 involved_in ISO (MGI:5908473|PMID:28596365) UniProt PMID:28596365 MGI:5908473 NCBI chr 3:91,673,424...91,708,751
Ensembl chr 3:91,676,496...91,708,754
JBrowse link
G PCGF5 polycomb group ring finger 5 involved_in IBA
IEA
(PMID:21873635) GO_Central
Ensembl
GO_Central
Ensembl
PMID:21873635 GO_REF:0000107 NCBI chr28:5,821,278...5,889,382
Ensembl chr28:5,821,307...5,883,795
JBrowse link
inactivation of X chromosome by heterochromatin assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G SMCHD1 structural maintenance of chromosomes flexible hinge domain containing 1 involved_in ISO (MGI:5532809|PMID:23754746) UniProt PMID:23754746 MGI:5532809 NCBI chr 7:69,359,286...69,505,067
Ensembl chr 7:69,358,447...69,621,067
JBrowse link
negative regulation of DNA methylation-dependent heterochromatin assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AICDA activation induced cytidine deaminase involved_in ISS UniProt
UniProt
GO_REF:0000024 NCBI chr27:37,064,107...37,073,791
Ensembl chr27:37,064,080...37,073,789
JBrowse link
G APOBEC1 apolipoprotein B mRNA editing enzyme catalytic subunit 1 involved_in ISO (MGI:5285126|PMID:21496894) UniProt PMID:21496894 MGI:5285126 NCBI chr27:37,102,728...37,114,084
Ensembl chr27:37,103,016...37,114,556
JBrowse link
G TET1 tet methylcytosine dioxygenase 1 involved_in ISO (PMID:21496894) UniProt PMID:21496894 NCBI chr 4:19,759,661...19,898,345
Ensembl chr 4:19,768,137...19,889,907
JBrowse link
negative regulation of gene expression, epigenetic term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G BMI1 BMI1 proto-oncogene, polycomb ring finger involved_in ISO (PMID:24623306) UniProt PMID:24623306 NCBI chr 2:10,818,232...10,828,473
Ensembl chr 2:10,818,232...10,833,613
JBrowse link
G CREBZF CREB/ATF bZIP transcription factor involved_in ISO (PMID:15705566) UniProt PMID:15705566 NCBI chr21:13,777,768...13,783,396 JBrowse link
G DNMT3B DNA methyltransferase 3 beta involved_in ISO (MGI:3765099|PMID:18056424) UniProt PMID:18056424 MGI:3765099 NCBI chr24:22,096,386...22,123,378
Ensembl chr24:22,096,349...22,122,900
JBrowse link
G EPC1 enhancer of polycomb homolog 1 acts_upstream_of_or_within
involved_in
ISO
IEA
(PMID:10976108) MGI
Ensembl
Ensembl
PMID:10976108 GO_REF:0000107 NCBI chr 2:14,566,177...14,659,774
Ensembl chr 2:14,565,560...14,659,353
JBrowse link
G EZH2 enhancer of zeste 2 polycomb repressive complex 2 subunit involved_in IEA Ensembl GO_REF:0000107 NCBI chr16:1,926,443...1,991,995
Ensembl chr16:1,925,956...1,991,838
JBrowse link
G LHX2 LIM homeobox 2 involved_in IEA Ensembl
Ensembl
GO_REF:0000107 NCBI chr 9:58,825,505...58,859,311
Ensembl chr 9:58,825,492...58,845,883
JBrowse link
G MACROH2A1 macroH2A.1 histone involved_in IEA Ensembl GO_REF:0000107 NCBI chr11:23,369,957...23,448,235
Ensembl chr11:23,370,300...23,438,219
JBrowse link
G MACROH2A2 macroH2A.2 histone involved_in IEA Ensembl GO_REF:0000107 NCBI chr 4:21,057,935...21,087,097
Ensembl chr 4:21,057,947...21,086,730
JBrowse link
G MORC2 MORC family CW-type zinc finger 2 involved_in ISO (PMID:28581500), (PMID:29211708) UniProt PMID:28581500 PMID:29211708 NCBI chr26:23,951,704...23,993,620
Ensembl chr26:23,953,130...23,992,431
JBrowse link
G MPHOSPH8 M-phase phosphoprotein 8 involved_in IEA Ensembl
Ensembl
GO_REF:0000107 NCBI chr25:18,392,706...18,443,241
Ensembl chr25:18,392,409...18,443,241
JBrowse link
G PPHLN1 periphilin 1 involved_in IBA (PMID:21873635) GO_Central
GO_Central
PMID:21873635 NCBI chr27:11,445,893...11,590,168
Ensembl chr27:11,443,394...11,590,107
JBrowse link
G PPM1D protein phosphatase, Mg2+/Mn2+ dependent 1D involved_in IEA Ensembl GO_REF:0000107 NCBI chr 9:35,856,277...35,914,096
Ensembl chr 9:35,856,765...35,913,884
JBrowse link
G RIF1 replication timing regulatory factor 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr19:52,661,278...52,711,969
Ensembl chr19:52,661,155...52,709,279
JBrowse link
G SIRT6 sirtuin 6 involved_in ISO (PMID:21847107) BHF-UCL PMID:21847107 NCBI chr20:55,412,989...55,424,944
Ensembl chr20:55,412,646...55,424,944
JBrowse link
G SMYD5 SMYD family member 5 involved_in IEA Ensembl
Ensembl
GO_REF:0000107 NCBI chr17:49,638,436...49,650,231
Ensembl chr17:49,639,765...49,650,182
JBrowse link
G SPI1 Spi-1 proto-oncogene involved_in ISO (PMID:20139074) UniProt PMID:20139074 NCBI chr18:42,253,849...42,269,497
Ensembl chr18:42,253,811...42,269,727
JBrowse link
G TASOR transcription activation suppressor involved_in IBA (PMID:21873635) GO_Central
GO_Central
PMID:21873635 NCBI chr20:33,665,231...33,713,264
Ensembl chr20:33,646,000...33,712,936
JBrowse link
G TRIM27 tripartite motif containing 27 acts_upstream_of_or_within ISO (PMID:10976108) MGI PMID:10976108 NCBI chr35:25,904,381...25,922,531
Ensembl chr35:25,905,396...25,923,336
JBrowse link
negative regulation of ribosomal DNA heterochromatin assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G PHF2 PHD finger protein 2 involved_in ISO (PMID:20129925) UniProt PMID:20129925 NCBI chr 1:98,188,014...98,253,930
Ensembl chr 1:98,188,826...98,254,411
JBrowse link
G PHF8 PHD finger protein 8 involved_in IEA Ensembl
Ensembl
GO_REF:0000107 NCBI chr  X:45,635,204...45,741,850
Ensembl chr  X:45,571,840...46,081,994
JBrowse link
pericentric heterochromatin assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CENPV centromere protein V involved_in ISO (PMID:18772885) UniProt PMID:18772885 NCBI chr 5:39,568,115...39,582,900
Ensembl chr 5:39,567,790...39,582,897
JBrowse link
G DICER1 dicer 1, ribonuclease III acts_upstream_of_or_within ISO (MGI:3528782|PMID:15713842) MGI PMID:15713842 MGI:3528782 NCBI chr 8:63,970,245...64,029,438
Ensembl chr 8:63,972,027...64,019,879
JBrowse link
G H3-3A H3.3 histone A involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:5694896|PMID:26159997) Ensembl
Ensembl
MGI
PMID:26159997 GO_REF:0000107 MGI:5694896 NCBI chr 7:38,797,168...38,805,417
Ensembl chr 7:38,797,448...38,805,416
JBrowse link
G H3-3B H3.3 histone B involved_in IEA Ensembl
Ensembl
GO_REF:0000107 NCBI chr 9:4,805,655...4,808,076
Ensembl chr 9:4,805,650...4,833,503
JBrowse link
G HELLS helicase, lymphoid specific involved_in IBA
IEA
(PMID:21873635) GO_Central
GO_Central
Ensembl
PMID:21873635 GO_REF:0000107 NCBI chr28:8,660,866...8,705,570
Ensembl chr28:8,661,008...8,705,580
JBrowse link
positive regulation of DNA methylation-dependent heterochromatin assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ATF7IP activating transcription factor 7 interacting protein involved_in IBA (PMID:21873635) GO_Central
GO_Central
PMID:21873635 NCBI chr27:32,082,615...32,194,954
Ensembl chr27:32,086,675...32,177,364
JBrowse link
G DNMT1 DNA methyltransferase 1 involved_in ISO (PMID:24623306) UniProt PMID:24623306 NCBI chr20:50,872,213...50,928,352
Ensembl chr20:50,879,527...50,928,029
JBrowse link
G MORC2 MORC family CW-type zinc finger 2 involved_in ISO (PMID:28581500), (PMID:29211708)
(MGI:6271895|PMID:29728365)
UniProt PMID:28581500 PMID:29211708 PMID:29728365 MGI:6271895 NCBI chr26:23,951,704...23,993,620
Ensembl chr26:23,953,130...23,992,431
JBrowse link
G MPHOSPH8 M-phase phosphoprotein 8 involved_in IEA Ensembl
Ensembl
GO_REF:0000107 NCBI chr25:18,392,706...18,443,241
Ensembl chr25:18,392,409...18,443,241
JBrowse link
G PPHLN1 periphilin 1 involved_in ISO (PMID:28581500) UniProt PMID:28581500 NCBI chr27:11,445,893...11,590,168
Ensembl chr27:11,443,394...11,590,107
JBrowse link
G RESF1 retroelement silencing factor 1 involved_in IBA (PMID:21873635) GO_Central
GO_Central
PMID:21873635 NCBI chr27:16,829,611...16,856,960
Ensembl chr27:16,829,968...16,839,166
JBrowse link
G SETDB1 SET domain bifurcated histone lysine methyltransferase 1 involved_in IBA
IEA
(PMID:21873635) GO_Central
GO_Central
Ensembl
Ensembl
PMID:21873635 GO_REF:0000107 NCBI chr17:60,035,819...60,069,721
Ensembl chr17:60,037,379...60,069,551
JBrowse link
G SETDB2 SET domain bifurcated histone lysine methyltransferase 2 involved_in IBA (PMID:21873635) GO_Central
GO_Central
PMID:21873635 NCBI chr22:2,263,990...2,319,249
Ensembl chr22:2,244,507...2,319,158
JBrowse link
G TASOR transcription activation suppressor involved_in IBA (PMID:21873635) GO_Central
GO_Central
PMID:21873635 NCBI chr20:33,665,231...33,713,264
Ensembl chr20:33,646,000...33,712,936
JBrowse link
G TRIM28 tripartite motif containing 28 involved_in ISO (PMID:24623306)
(MGI:5440670|PMID:20164836)
UniProt PMID:20164836 PMID:24623306 MGI:5440670 NCBI chr 1:99,408,920...99,415,432
Ensembl chr 1:99,408,925...99,415,146
JBrowse link
G ZNF304 zinc finger protein 304 involved_in ISO (PMID:24623306) UniProt PMID:24623306 NCBI chr 1:100,739,792...100,748,656
Ensembl chr 1:100,740,374...100,768,032
JBrowse link
positive regulation of heterochromatin assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CDK2 cyclin dependent kinase 2 involved_in ISO (PMID:20935635) UniProt PMID:20935635 NCBI chr10:300,863...306,546
Ensembl chr10:300,903...305,438
JBrowse link
G SIN3A SIN3 transcription regulator family member A involved_in ISO (PMID:22783022) BHF-UCL PMID:22783022 NCBI chr30:38,231,844...38,306,665
Ensembl chr30:38,232,680...38,382,635
JBrowse link
G TPR translocated promoter region, nuclear basket protein involved_in ISO (PMID:20407419) UniProt PMID:20407419 NCBI chr 7:19,376,951...19,442,368
Ensembl chr 7:19,376,975...19,442,303
JBrowse link
random inactivation of X chromosome term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CDYL chromodomain Y like involved_in ISO (MGI:5551942|PMID:24144980) UniProt PMID:24144980 MGI:5551942 NCBI chr35:4,844,757...5,074,967
Ensembl chr35:4,844,779...5,073,670
JBrowse link
G LOC491808 E3 ubiquitin-protein ligase RLIM-like involved_in IBA (PMID:21873635) GO_Central
GO_Central
PMID:21873635 NCBI chr  X:29,455,208...29,459,188 JBrowse link
G RLIM ring finger protein, LIM domain interacting involved_in IBA
IEA
(PMID:21873635) GO_Central
GO_Central
Ensembl
PMID:21873635 GO_REF:0000107 NCBI chr  X:57,879,749...57,905,805
Ensembl chr  X:57,885,123...57,889,253
JBrowse link
rDNA heterochromatin assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G BAZ2A bromodomain adjacent to zinc finger domain 2A involved_in
acts_upstream_of_or_within
ISO (MGI:3587127|PMID:16085498), (MGI:3852313|PMID:12198165), (MGI:3852588|PMID:19578370)
(MGI:3653583|PMID:16678107)
(MGI:4462332|PMID:20168299)
UniProt
MGI
PMID:12198165 PMID:16085498 PMID:16678107 PMID:19578370 PMID:20168299 MGI:3587127 MGI:3653583 MGI:3852313 MGI:3852588 MGI:4462332 NCBI chr10:834,018...868,817
Ensembl chr10:836,465...863,874
JBrowse link
G BEND3 BEN domain containing 3 involved_in IBA
IEA
(PMID:21873635) GO_Central
GO_Central
InterPro
Ensembl
PMID:21873635 GO_REF:0000002 GO_REF:0000107 NCBI chr12:64,302,403...64,324,396
Ensembl chr12:64,306,140...64,322,725
JBrowse link
G RRP8 ribosomal RNA processing 8 involved_in IBA (PMID:21873635) GO_Central
GO_Central
PMID:21873635 NCBI chr21:29,907,555...29,917,142
Ensembl chr21:29,907,361...29,918,408
JBrowse link
G SIRT1 sirtuin 1 involved_in ISO (PMID:18485871) UniProt PMID:18485871 NCBI chr 4:19,188,616...19,220,031
Ensembl chr 4:19,188,675...19,218,279
JBrowse link
G SMARCA5 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5 involved_in ISO (MGI:3587127|PMID:16085498), (MGI:3852313|PMID:12198165) UniProt PMID:12198165 PMID:16085498 MGI:3587127 MGI:3852313 NCBI chr15:42,731,147...42,771,577
Ensembl chr15:42,731,426...42,770,624
JBrowse link
G SUV39H1 SUV39H1 histone lysine methyltransferase involved_in ISO (PMID:18485871) UniProt PMID:18485871 NCBI chr  X:41,894,623...41,907,854
Ensembl chr  X:41,893,045...41,906,403
JBrowse link
G UBTF upstream binding transcription factor acts_upstream_of_or_within ISO (MGI:3836497|PMID:19103806) MGI PMID:19103806 MGI:3836497 NCBI chr 9:19,177,778...19,189,805
Ensembl chr 9:19,179,174...19,189,181
JBrowse link
regulation of DNA methylation-dependent heterochromatin assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G KDM1A lysine demethylase 1A involved_in IEA Ensembl
Ensembl
GO_REF:0000107 NCBI chr 2:76,313,742...76,375,716
Ensembl chr 2:76,156,434...76,375,632
JBrowse link
G L3MBTL3 L3MBTL histone methyl-lysine binding protein 3 involved_in ISO (PMID:33980486) UniProt PMID:33980486 NCBI chr 1:68,538,014...68,655,173
Ensembl chr 1:68,540,051...68,654,414
JBrowse link
G SAMD1 sterile alpha motif domain containing 1 involved_in ISO (PMID:33980486) UniProt PMID:33980486 NCBI chr20:48,427,935...48,430,703 JBrowse link
regulation of dosage compensation by inactivation of X chromosome term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G HCFC1 host cell factor C1 involved_in ISO (MGI:6207704|PMID:24842875) ComplexPortal PMID:24842875 MGI:6207704 NCBI chr  X:121,790,585...121,815,395
Ensembl chr  X:121,791,660...121,814,715
JBrowse link
G KANSL1 KAT8 regulatory NSL complex subunit 1 involved_in IEA Ensembl
Ensembl
GO_REF:0000107 Ensembl chr 9:9,381,737...9,565,976
Ensembl chr 9:9,381,737...9,565,976
JBrowse link
G KANSL2 KAT8 regulatory NSL complex subunit 2 involved_in ISO (MGI:6207704|PMID:24842875) ComplexPortal PMID:24842875 MGI:6207704 NCBI chr27:5,826,587...5,845,207
Ensembl chr27:5,826,584...5,844,656
JBrowse link
G KANSL3 KAT8 regulatory NSL complex subunit 3 involved_in ISO (MGI:6207704|PMID:24842875) ComplexPortal PMID:24842875 MGI:6207704 NCBI chr10:45,315,919...45,359,677
Ensembl chr10:45,317,089...45,357,658
JBrowse link
G KAT8 lysine acetyltransferase 8 involved_in ISO (MGI:6207704|PMID:24842875) ComplexPortal PMID:24842875 MGI:6207704 NCBI chr 6:17,114,528...17,125,287
Ensembl chr 6:17,114,528...17,125,203
JBrowse link
G LOC491808 E3 ubiquitin-protein ligase RLIM-like involved_in IBA (PMID:21873635) GO_Central
GO_Central
PMID:21873635 NCBI chr  X:29,455,208...29,459,188 JBrowse link
G MCRS1 microspherule protein 1 involved_in IEA Ensembl
Ensembl
GO_REF:0000107 NCBI chr27:5,076,075...5,085,483
Ensembl chr27:5,076,470...5,085,488
JBrowse link
G MSL1 MSL complex subunit 1 involved_in IEA Ensembl
Ensembl
GO_REF:0000107 NCBI chr 9:22,429,371...22,441,686
Ensembl chr 9:22,429,522...22,441,767
JBrowse link
G MSL2 MSL complex subunit 2 involved_in IEA Ensembl
Ensembl
GO_REF:0000107 NCBI chr23:32,629,120...32,663,885
Ensembl chr23:32,631,804...32,664,277
JBrowse link
G MSL3 MSL complex subunit 3 involved_in ISO (MGI:6207704|PMID:24842875) ComplexPortal PMID:24842875 MGI:6207704 NCBI chr  X:8,294,797...8,311,142
Ensembl chr  X:8,294,802...8,310,751
JBrowse link
G OGT O-linked N-acetylglucosamine (GlcNAc) transferase involved_in IEA Ensembl
Ensembl
GO_REF:0000107 NCBI chr  X:55,821,227...55,857,597
Ensembl chr  X:55,821,234...55,855,502
JBrowse link
G PHF20 PHD finger protein 20 involved_in IEA Ensembl
Ensembl
GO_REF:0000107 NCBI chr24:24,674,706...24,821,286
Ensembl chr24:24,674,797...24,821,269
JBrowse link
G RLIM ring finger protein, LIM domain interacting involved_in
acts_upstream_of_or_within
IBA
IEA
ISO
(PMID:21873635)
(MGI:5581575|PMID:24613346)
GO_Central
GO_Central
Ensembl
MGI
PMID:21873635 PMID:24613346 GO_REF:0000107 MGI:5581575 NCBI chr  X:57,879,749...57,905,805
Ensembl chr  X:57,885,123...57,889,253
JBrowse link
G WDR5 WD repeat domain 5 involved_in ISO (MGI:6207704|PMID:24842875) ComplexPortal PMID:24842875 MGI:6207704 NCBI chr 9:50,352,600...50,371,224
Ensembl chr 9:50,352,472...50,371,236
JBrowse link
regulation of gene expression by genomic imprinting term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ARID4A AT-rich interaction domain 4A acts_upstream_of_or_within ISO (MGI:3686546|PMID:17043311) MGI PMID:17043311 MGI:3686546 NCBI chr 8:33,661,558...33,729,660
Ensembl chr 8:33,661,625...33,727,986
JBrowse link
G ARID4B AT-rich interaction domain 4B acts_upstream_of_or_within ISO (MGI:3686546|PMID:17043311) MGI PMID:17043311 MGI:3686546 NCBI chr 4:4,602,470...4,752,060
Ensembl chr 4:4,602,667...4,750,469
JBrowse link
G BRCA1 BRCA1 DNA repair associated involved_in IEA Ensembl
Ensembl
GO_REF:0000107 NCBI chr 9:19,958,941...20,025,494
Ensembl chr 9:19,958,391...20,025,494
JBrowse link
G CTCF CCCTC-binding factor acts_upstream_of_or_within ISO (MGI:2450195|PMID:12461525), (MGI:3045676|PMID:15143173)
(MGI:3044090|PMID:14716017)
MGI PMID:12461525 PMID:14716017 PMID:15143173 MGI:2450195 MGI:3044090 MGI:3045676 NCBI chr 5:81,808,512...81,863,811
Ensembl chr 5:81,809,393...81,858,655
JBrowse link
G CTCFL CCCTC-binding factor like involved_in ISO (MGI:3692841|PMID:17048991) UniProt PMID:17048991 MGI:3692841 NCBI chr24:42,477,029...42,507,217
Ensembl chr24:42,477,342...42,507,225
JBrowse link
G DNMT3A DNA methyltransferase 3 alpha acts_upstream_of_or_within
involved_in
ISO (MGI:3045942|PMID:15215868)
(MGI:5009774|PMID:21047779)
(MGI:2178074|PMID:11934864)
MGI
BHF-UCL
PMID:11934864 PMID:15215868 PMID:21047779 MGI:2178074 MGI:3045942 MGI:5009774 NCBI chr17:19,489,524...19,563,074
Ensembl chr17:19,492,193...19,563,902
JBrowse link
G DNMT3B DNA methyltransferase 3 beta acts_upstream_of_or_within ISO (MGI:2178074|PMID:11934864) MGI PMID:11934864 MGI:2178074 NCBI chr24:22,096,386...22,123,378
Ensembl chr24:22,096,349...22,122,900
JBrowse link
G EED embryonic ectoderm development acts_upstream_of_or_within ISO (MGI:2655036|PMID:12627233) MGI PMID:12627233 MGI:2655036 NCBI chr21:13,260,062...13,289,511
Ensembl chr21:13,260,002...13,289,337
JBrowse link
G GSK3A glycogen synthase kinase 3 alpha involved_in ISO (MGI:5009774|PMID:21047779) BHF-UCL PMID:21047779 MGI:5009774 NCBI chr 1:112,129,116...112,138,714
Ensembl chr 1:112,103,825...112,138,559
JBrowse link
G GSK3B glycogen synthase kinase 3 beta involved_in ISO (MGI:5009774|PMID:21047779) BHF-UCL PMID:21047779 MGI:5009774 NCBI chr33:23,458,369...23,659,878
Ensembl chr33:23,463,767...23,659,666
JBrowse link
G KCNQ1 potassium voltage-gated channel subfamily Q member 1 acts_upstream_of_or_within ISO (MGI:3054495|PMID:15340049)
(MGI:2389526|PMID:12410230)
MGI PMID:12410230 PMID:15340049 MGI:2389526 MGI:3054495 NCBI chr18:46,554,390...46,830,533
Ensembl chr18:46,518,908...46,830,043
JBrowse link
G KDM1B lysine demethylase 1B acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:4358629|PMID:19727073) MGI
Ensembl
Ensembl
PMID:19727073 GO_REF:0000107 MGI:4358629 NCBI chr35:16,954,483...17,014,261
Ensembl chr35:16,921,095...17,012,527
JBrowse link
G MECP2 methyl-CpG binding protein 2 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:3530434|PMID:15608638)
(PMID:15608638)
MGI
Ensembl
Ensembl
PMID:15608638 GO_REF:0000107 MGI:3530434 NCBI chr  X:121,866,721...121,876,088
Ensembl chr  X:121,873,218...121,932,994
JBrowse link
G PRMT7 protein arginine methyltransferase 7 involved_in IEA UniProt
UniProt
Ensembl
GO_REF:0000104 GO_REF:0000107 NCBI chr 5:81,172,085...81,216,708
Ensembl chr 5:81,173,147...81,216,669
JBrowse link
G ZFP57 ZFP57 zinc finger protein involved_in
acts_upstream_of_or_within
ISO (PMID:18622393)
(MGI:6506156|PMID:33500348)
(MGI:3826319|PMID:18854139)
UniProt
MGI
PMID:18622393 PMID:18854139 PMID:33500348 MGI:3826319 MGI:6506156 NCBI chr35:26,267,358...26,269,429 JBrowse link
regulation of genetic imprinting term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CTR9 CTR9 homolog, Paf1/RNA polymerase II complex component involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:5528755|PMID:24036311) Ensembl
Ensembl
MGI
PMID:24036311 GO_REF:0000107 MGI:5528755 NCBI chr21:33,915,804...33,949,597
Ensembl chr21:33,915,772...33,949,103
JBrowse link
G DPPA3 developmental pluripotency associated 3 involved_in ISO (MGI:5432962|PMID:22722204), (MGI:5447615|PMID:17143267) UniProt PMID:17143267 PMID:22722204 MGI:5432962 MGI:5447615 NCBI chr27:37,114,192...37,196,434 JBrowse link
G PIK3CA phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit alpha involved_in IEA Ensembl
Ensembl
GO_REF:0000107 NCBI chr34:12,600,140...12,681,905
Ensembl chr34:12,600,233...12,675,910
JBrowse link
G TET1 tet methylcytosine dioxygenase 1 acts_upstream_of_or_within ISO (MGI:5559953|PMID:24291790) MGI PMID:24291790 MGI:5559953 NCBI chr 4:19,759,661...19,898,345
Ensembl chr 4:19,768,137...19,889,907
JBrowse link
G TRIM28 tripartite motif containing 28 acts_upstream_of_or_within ISO (MGI:5319411|PMID:22495301) MGI PMID:22495301 MGI:5319411 NCBI chr 1:99,408,920...99,415,432
Ensembl chr 1:99,408,925...99,415,146
JBrowse link
G ZFP42 ZFP42 zinc finger protein acts_upstream_of_or_within ISO (MGI:4940138|PMID:21233130) MGI PMID:21233130 MGI:4940138 NCBI chr16:43,091,607...43,092,521
Ensembl chr16:43,091,607...43,092,371
JBrowse link
G ZFP57 ZFP57 zinc finger protein involved_in ISO (MGI:6284037|PMID:30602440) UniProt PMID:30602440 MGI:6284037 NCBI chr35:26,267,358...26,269,429 JBrowse link
G ZNF445 zinc finger protein 445 involved_in ISO (PMID:30602440)
(MGI:6284037|PMID:30602440)
UniProt PMID:30602440 MGI:6284037 NCBI chr23:1,906,958...1,940,340
Ensembl chr23:1,927,625...1,939,382
JBrowse link
regulation of ribosomal DNA heterochromatin assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G MACROH2A1 macroH2A.1 histone NOT|involved_in ISO (PMID:24071584) UniProt PMID:24071584 NCBI chr11:23,369,957...23,448,235
Ensembl chr11:23,370,300...23,438,219
JBrowse link
subtelomeric heterochromatin assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G DOT1L DOT1 like histone lysine methyltransferase involved_in IBA (PMID:21873635) GO_Central
GO_Central
PMID:21873635 NCBI chr20:56,805,030...56,868,771
Ensembl chr20:56,803,242...56,852,539
JBrowse link
G DYDC1 DPY30 domain containing 1 involved_in IBA (PMID:21873635) GO_Central
GO_Central
PMID:21873635 NCBI chr 4:29,490,171...29,505,096
Ensembl chr 4:29,466,810...29,501,363
JBrowse link
G DYDC2 DPY30 domain containing 2 involved_in IBA (PMID:21873635) GO_Central
GO_Central
PMID:21873635 NCBI chr 4:29,505,037...29,514,787
Ensembl chr 4:29,509,614...29,514,409
JBrowse link
G EZH1 enhancer of zeste 1 polycomb repressive complex 2 subunit involved_in ISO (MGI:892875|PMID:9214638) ARUK-UCL PMID:9214638 MGI:892875 NCBI chr 9:20,271,729...20,292,918
Ensembl chr 9:20,264,552...20,290,712
JBrowse link
G EZH2 enhancer of zeste 2 polycomb repressive complex 2 subunit involved_in IEA Ensembl
Ensembl
GO_REF:0000107 NCBI chr16:1,926,443...1,991,995
Ensembl chr16:1,925,956...1,991,838
JBrowse link
G H3-3A H3.3 histone A involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:5694896|PMID:26159997) Ensembl
Ensembl
MGI
PMID:26159997 GO_REF:0000107 MGI:5694896 NCBI chr 7:38,797,168...38,805,417
Ensembl chr 7:38,797,448...38,805,416
JBrowse link
G H3-3B H3.3 histone B involved_in IEA Ensembl
Ensembl
GO_REF:0000107 NCBI chr 9:4,805,655...4,808,076
Ensembl chr 9:4,805,650...4,833,503
JBrowse link
G RIF1 replication timing regulatory factor 1 involved_in IEA Ensembl
Ensembl
GO_REF:0000107 NCBI chr19:52,661,278...52,711,969
Ensembl chr19:52,661,155...52,709,279
JBrowse link
G SIRT6 sirtuin 6 involved_in ISO (PMID:21847107) BHF-UCL PMID:21847107 NCBI chr20:55,412,989...55,424,944
Ensembl chr20:55,412,646...55,424,944
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 16237
    cellular process 15517
      cellular component organization or biogenesis 6111
        cellular component organization 5944
          chromatin organization 488
            regulation of gene expression, epigenetic 184
              dosage compensation + 33
              epigenetic maintenance of chromatin in transcription-competent conformation 15
              negative regulation of gene expression, epigenetic + 115
              regulation of gene expression by genomic imprinting + 17
              transvection 0
Path 2
Term Annotations click to browse term
  biological_process 16237
    cellular process 15517
      cellular component organization or biogenesis 6111
        cellular component organization 5944
          organelle organization 3680
            chromosome organization 917
              chromatin organization 488
                regulation of gene expression, epigenetic 184
                  dosage compensation + 33
                  epigenetic maintenance of chromatin in transcription-competent conformation 15
                  negative regulation of gene expression, epigenetic + 115
                  regulation of gene expression by genomic imprinting + 17
                  transvection 0
paths to the root