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ONTOLOGY REPORT - ANNOTATIONS


Term:regulation of gene expression, epigenetic
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Accession:GO:0040029 term browser browse the term
Definition:A process that modulates the frequency, rate or extent of gene expression by remodelling of chromatin by either modifying the chromatin fiber, the nucleosomal histones, or the DNA. Once established, this regulation may be maintained over many cell divisions. It can also be heritable in the absence of the instigating signal.



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regulation of gene expression, epigenetic term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ASIP agouti signaling protein acts_upstream_of_or_within ISO (MGI:2652932|PMID:12601169) MGI PMID:12601169 MGI:2652932 NCBI chr20:30,583,038...30,592,726
Ensembl chr20:31,718,169...31,727,217
JBrowse link
G CGGBP1 CGG triplet repeat binding protein 1 involved_in ISO (PMID:31547883) ARUK-UCL PMID:31547883 NCBI chr 3:88,190,366...88,197,367 JBrowse link
G CTCF CCCTC-binding factor involved_in IEA Ensembl GO_REF:0000107 NCBI chr16:47,906,503...47,983,271
Ensembl chr16:67,302,952...67,372,041
JBrowse link
G GLMN glomulin, FKBP associated protein involved_in IEA Ensembl GO_REF:0000107 NCBI chr 1:94,907,342...94,963,052
Ensembl chr 1:93,646,499...93,701,430
JBrowse link
G GPX1 glutathione peroxidase 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 3:49,280,038...49,281,455
Ensembl chr 3:50,360,947...50,361,826
JBrowse link
G HDAC4 histone deacetylase 4 involved_in ISO (PMID:24413532) UniProt PMID:24413532 NCBI chr2B:126,287,745...126,649,815
Ensembl chr2B:245,123,061...245,427,054
JBrowse link
G HDAC5 histone deacetylase 5 involved_in IEA InterPro GO_REF:0000002 NCBI chr17:13,273,052...13,319,695
Ensembl chr17:13,446,836...13,479,140
JBrowse link
G HDAC6 histone deacetylase 6 involved_in IEA Ensembl GO_REF:0000107 NCBI chr  X:41,099,539...41,122,650
Ensembl chr  X:48,960,430...48,982,642
JBrowse link
G IFI16 interferon gamma inducible protein 16 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 1:134,364,706...134,405,910
Ensembl chr 1:138,152,328...138,203,424
JBrowse link
G KLF2 Kruppel like factor 2 acts_upstream_of_or_within ISO (MGI:5429781|PMID:22482507) MGI PMID:22482507 MGI:5429781 NCBI chr19:15,812,506...15,815,244 JBrowse link
G LOC100974858 core histone macro-H2A.1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 5:130,727,065...130,791,932
Ensembl chr 5:136,868,521...136,933,834
JBrowse link
G LOC100985978 histone H3.1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 6:27,642,894...27,644,248
Ensembl chr 6:26,764,749...26,765,159
Ensembl chr 6:26,764,749...26,765,159
JBrowse link
G LOC100991861 histone H3.1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 6:25,865,046...25,865,544
Ensembl chr 6:26,523,132...26,523,542
JBrowse link
G LOC103784296 histone H3.1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 6:26,085,157...26,085,690 JBrowse link
G LOC112440133 histone H2A type 1-H involved_in ISO (PMID:16267050) BHF-UCL PMID:16267050 NCBI chr 6:26,032,198...26,034,578
Ensembl chr 6:26,694,469...26,694,861
Ensembl chr 6:26,694,469...26,694,861
JBrowse link
G MECP2 methyl-CpG binding protein 2 acts_upstream_of_or_within ISO (MGI:3576944|PMID:15757975)
(MGI:3789859|PMID:17532643)
MGI PMID:15757975 PMID:17532643 MGI:3576944 MGI:3789859 NCBI chr  X:143,571,864...143,647,192
Ensembl chr  X:153,465,204...153,527,854
JBrowse link
G MORC1 MORC family CW-type zinc finger 1 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:5694015|PMID:25503965) MGI
Ensembl
PMID:25503965 GO_REF:0000107 MGI:5694015 NCBI chr 3:106,091,990...106,251,790
Ensembl chr 3:113,021,874...113,180,331
JBrowse link
G MTA1 metastasis associated 1 involved_in ISO (PMID:24413532) UniProt PMID:24413532 NCBI chr14:86,058,412...86,111,736 JBrowse link
G PRDM14 PR/SET domain 14 acts_upstream_of_or_within ISO (MGI:5429781|PMID:22482507) MGI PMID:22482507 MGI:5429781 NCBI chr 8:66,578,674...66,599,360
Ensembl chr 8:68,240,741...68,260,263
JBrowse link
G TDG thymine DNA glycosylase involved_in ISO (MGI:5141157|PMID:21722948), (MGI:5487523|PMID:21278727) UniProt PMID:21278727 PMID:21722948 MGI:5141157 MGI:5487523 NCBI chr12:101,543,945...101,567,035
Ensembl chr12:104,938,519...104,961,284
JBrowse link
G TFAP2C transcription factor AP-2 gamma involved_in IEA Ensembl GO_REF:0000107 NCBI chr20:52,966,907...52,981,024
Ensembl chr20:54,255,489...54,265,432
JBrowse link
G ZNF335 zinc finger protein 335 involved_in IEA Ensembl GO_REF:0000107 NCBI chr20:42,287,518...42,312,169
Ensembl chr20:43,374,591...43,397,724
JBrowse link
DNA methylation-dependent heterochromatin assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G DNMT1 DNA methyltransferase 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr19:9,681,847...9,745,334
Ensembl chr19:10,342,478...10,406,972
JBrowse link
G DNMT3A DNA methyltransferase 3 alpha acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:3768461|PMID:17938196)
(MGI:3611125|PMID:16322236)
MGI
Ensembl
PMID:16322236 PMID:17938196 GO_REF:0000107 MGI:3611125 MGI:3768461 NCBI chr2A:25,229,593...25,344,733
Ensembl chr2A:25,331,095...25,412,605
JBrowse link
G DNMT3B DNA methyltransferase 3 beta acts_upstream_of_or_within ISO (MGI:3768461|PMID:17938196) MGI PMID:17938196 MGI:3768461 NCBI chr20:29,049,993...29,096,957
Ensembl chr20:30,186,069...30,215,487
JBrowse link
G HDAC1 histone deacetylase 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 1:31,578,373...31,619,970
Ensembl chr 1:32,585,791...32,626,410
JBrowse link
G HELLS helicase, lymphoid specific involved_in IEA Ensembl GO_REF:0000107 NCBI chr10:91,282,330...91,344,156
Ensembl chr10:94,790,292...94,847,209
JBrowse link
G KMT2B lysine methyltransferase 2B acts_upstream_of_or_within ISO (MGI:4849597|PMID:20808952) MGI PMID:20808952 MGI:4849597 NCBI chr19:32,647,815...32,668,656
Ensembl chr19:41,382,458...41,402,695
JBrowse link
G MBD2 methyl-CpG binding domain protein 2 involved_in ISO (PMID:23770133) BHF-UCL PMID:23770133 NCBI chr18:47,534,356...47,609,481 JBrowse link
G MBD3 methyl-CpG binding domain protein 3 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:3611125|PMID:16322236) MGI
Ensembl
PMID:16322236 GO_REF:0000107 MGI:3611125 Ensembl chr19:1,549,184...1,559,254 JBrowse link
G SMARCA4 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4 acts_upstream_of_or_within ISO (MGI:3611125|PMID:16322236) MGI PMID:16322236 MGI:3611125 NCBI chr19:10,515,216...10,616,155
Ensembl chr19:11,250,006...11,334,952
JBrowse link
dosage compensation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G LOC100974647 core histone macro-H2A.2 acts_upstream_of_or_within
involved_in
ISO
IEA
(PMID:11331621) MGI
Ensembl
PMID:11331621 GO_REF:0000107 NCBI chr10:66,526,013...66,585,568
Ensembl chr10:69,077,456...69,114,194
JBrowse link
G LOC100974858 core histone macro-H2A.1 acts_upstream_of_or_within
involved_in
ISO
IEA
(PMID:15053874) MGI
Ensembl
PMID:15053874 GO_REF:0000107 NCBI chr 5:130,727,065...130,791,932
Ensembl chr 5:136,868,521...136,933,834
JBrowse link
dosage compensation by inactivation of X chromosome term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G BRCA1 BRCA1 DNA repair associated acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:2389513|PMID:12419249) MGI
Ensembl
PMID:12419249 GO_REF:0000107 MGI:2389513 NCBI chr17:14,197,946...14,279,064
Ensembl chr17:14,428,526...14,506,815
JBrowse link
G EIF1 eukaryotic translation initiation factor 1 acts_upstream_of_or_within ISO (MGI:3694307|PMID:16789828) MGI PMID:16789828 MGI:3694307 NCBI chr17:15,622,030...15,624,812
Ensembl chr17:15,843,190...15,846,044
JBrowse link
G EXOSC10 exosome component 10 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:3694307|PMID:16789828) MGI
Ensembl
PMID:16789828 GO_REF:0000107 MGI:3694307 NCBI chr 1:9,829,922...9,865,092
Ensembl chr 1:11,050,727...11,087,241
JBrowse link
G HNRNPU heterogeneous nuclear ribonucleoprotein U involved_in IEA Ensembl GO_REF:0000107 NCBI chr 1:220,450,218...220,461,412
Ensembl chr 1:225,817,899...225,842,031
JBrowse link
G JARID2 jumonji and AT-rich interaction domain containing 2 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:5888829|PMID:27892467) MGI
Ensembl
PMID:27892467 GO_REF:0000107 MGI:5888829 NCBI chr 6:15,100,415...15,376,505
Ensembl chr 6:15,466,050...15,739,170
JBrowse link
G LRIF1 ligand dependent nuclear receptor interacting factor 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 1:113,523,567...113,611,043
Ensembl chr 1:126,736,039...126,752,907
JBrowse link
G METTL3 methyltransferase 3, N6-adenosine-methyltransferase complex catalytic subunit involved_in IEA Ensembl GO_REF:0000107 NCBI chr14:2,315,868...2,329,460
Ensembl chr14:20,392,665...20,405,906
JBrowse link
G RBM15 RNA binding motif protein 15 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 1:112,987,871...112,996,054
Ensembl chr 1:127,320,147...127,354,537
JBrowse link
G RBM15B RNA binding motif protein 15B involved_in ISO (PMID:27602518) UniProt PMID:27602518 NCBI chr 3:51,321,963...51,325,092 JBrowse link
G SMCHD1 structural maintenance of chromosomes flexible hinge domain containing 1 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:3821390|PMID:18425126), (MGI:5532809|PMID:23754746) MGI
Ensembl
PMID:18425126 PMID:23754746 GO_REF:0000107 MGI:3821390 MGI:5532809 NCBI chr18:11,479,742...11,627,035
Ensembl chr18:13,785,912...13,933,887
JBrowse link
G SUZ12 SUZ12 polycomb repressive complex 2 subunit acts_upstream_of_or_within ISO (MGI:5888829|PMID:27892467) MGI PMID:27892467 MGI:5888829 NCBI chr17:24,790,921...24,853,790 JBrowse link
G UPF1 UPF1 RNA helicase and ATPase acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:3694307|PMID:16789828) MGI
Ensembl
PMID:16789828 GO_REF:0000107 MGI:3694307 NCBI chr19:18,269,878...18,306,199
Ensembl chr19:19,292,725...19,313,224
JBrowse link
G YTHDC1 YTH domain containing 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 4:55,701,639...55,738,377
Ensembl chr 4:62,095,948...62,132,609
JBrowse link
epigenetic maintenance of chromatin in transcription-competent conformation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CHEK1 checkpoint kinase 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr11:120,446,352...120,478,207
Ensembl chr11:124,359,218...124,390,981
JBrowse link
G EP300 E1A binding protein p300 involved_in IEA Ensembl GO_REF:0000107 NCBI chr22:21,986,467...22,076,921
Ensembl chr22:40,079,503...40,168,604
JBrowse link
G FAM47E family with sequence similarity 47 member E involved_in ISO (PMID:33376131) ARUK-UCL PMID:33376131 NCBI chr 4:47,916,493...47,949,816 JBrowse link
G LOC100974858 core histone macro-H2A.1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 5:130,727,065...130,791,932
Ensembl chr 5:136,868,521...136,933,834
JBrowse link
G NR3C1 nuclear receptor subfamily 3 group C member 1 involved_in ISO PMID:12917342 UniProt PMID:12917342 RGD:8553888 NCBI chr 5:138,634,278...139,089,171
Ensembl chr 5:144,741,452...144,865,269
JBrowse link
G PABPC1L poly(A) binding protein cytoplasmic 1 like acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:5688228|PMID:26134869) MGI
Ensembl
PMID:26134869 GO_REF:0000107 MGI:5688228 NCBI chr20:41,240,430...41,270,036
Ensembl chr20:42,333,593...42,375,850
JBrowse link
G PADI2 peptidyl arginine deiminase 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 1:16,011,708...16,064,344
Ensembl chr 1:17,067,729...17,120,513
JBrowse link
G PHF2 PHD finger protein 2 involved_in ISO (MGI:6716956|PMID:22921934) UniProt PMID:22921934 MGI:6716956 NCBI chr 9:64,700,151...64,803,737
Ensembl chr 9:92,815,392...92,863,817
JBrowse link
G SMARCD1 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr12:38,655,236...38,670,618
Ensembl chr12:39,552,155...39,567,804
JBrowse link
G SPHK2 sphingosine kinase 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr19:45,620,980...45,631,786
Ensembl chr19:54,213,166...54,224,767
JBrowse link
G WBP2 WW domain binding protein 2 involved_in IEA InterPro
Ensembl
GO_REF:0000002 GO_REF:0000107 NCBI chr17:69,796,205...69,806,290
Ensembl chr17:75,346,204...75,356,463
JBrowse link
genomic imprinting term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ASIP agouti signaling protein acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:2652932|PMID:12601169) MGI
Ensembl
PMID:12601169 GO_REF:0000107 MGI:2652932 NCBI chr20:30,583,038...30,592,726
Ensembl chr20:31,718,169...31,727,217
JBrowse link
G AXIN1 axin 1 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:2652932|PMID:12601169) MGI
Ensembl
PMID:12601169 GO_REF:0000107 MGI:2652932 Ensembl chr16:278,239...337,891 JBrowse link
G CDKN1C cyclin dependent kinase inhibitor 1C acts_upstream_of_or_within ISO (MGI:3839493|PMID:19276117) MGI PMID:19276117 MGI:3839493 NCBI chr11:2,908,537...2,911,134 JBrowse link
G CTCF CCCTC-binding factor involved_in IEA Ensembl GO_REF:0000107 NCBI chr16:47,906,503...47,983,271
Ensembl chr16:67,302,952...67,372,041
JBrowse link
G DNMT3L DNA methyltransferase 3 like acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:3663953|PMID:16920095) MGI
Ensembl
PMID:16920095 GO_REF:0000107 MGI:3663953 NCBI chr21:30,503,194...30,520,237 JBrowse link
G LOC100978090 protein ALEX involved_in IEA Ensembl GO_REF:0000107 NCBI chr20:55,204,188...55,206,608
Ensembl chr20:56,474,459...56,621,747
JBrowse link
G LOC100990650 guanine nucleotide-binding protein G(s) subunit alpha acts_upstream_of_or_within ISO (MGI:4454202|PMID:20427744) MGI PMID:20427744 MGI:4454202 NCBI chr20:55,190,607...55,262,245 JBrowse link
G NDN necdin, MAGE family member acts_upstream_of_or_within ISO (MGI:1345919|PMID:10508517) MGI PMID:10508517 MGI:1345919 NCBI chr15:5,977,519...5,979,185 JBrowse link
G ZDBF2 zinc finger DBF-type containing 2 acts_upstream_of_or_within ISO (MGI:6151717|PMID:27841881) MGI PMID:27841881 MGI:6151717 NCBI chr2B:93,516,875...93,556,652
Ensembl chr2B:211,645,765...211,685,047
JBrowse link
G ZFP57 ZFP57 zinc finger protein acts_upstream_of_or_within ISO (MGI:6506156|PMID:33500348) MGI PMID:33500348 MGI:6506156 NCBI chr 6:29,476,459...29,485,480
Ensembl chr 6:30,134,263...30,143,045
JBrowse link
heterochromatin assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G BAHD1 bromo adjacent homology domain containing 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr15:19,376,233...19,404,699
Ensembl chr15:37,630,476...37,657,918
JBrowse link
G BAZ2A bromodomain adjacent to zinc finger domain 2A acts_upstream_of_or_within ISO (MGI:4462332|PMID:20168299)
(MGI:3653583|PMID:16678107)
MGI PMID:16678107 PMID:20168299 MGI:3653583 MGI:4462332 NCBI chr12:32,274,240...32,313,839
Ensembl chr12:32,529,634...32,566,248
JBrowse link
G CBX3 chromobox 3 involved_in ISO (PMID:17540172) ComplexPortal PMID:17540172 NCBI chr 7:26,847,247...26,859,339
Ensembl chr 7:26,450,411...26,462,350
JBrowse link
G CTBP1 C-terminal binding protein 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 4:1,354,806...1,393,244
Ensembl chr 4:1,238,984...1,266,822
JBrowse link
G EZH1 enhancer of zeste 1 polycomb repressive complex 2 subunit involved_in ISO (MGI:3820717|PMID:19026781) ARUK-UCL PMID:19026781 MGI:3820717 NCBI chr17:14,572,868...14,618,012
Ensembl chr17:14,814,054...14,842,295
JBrowse link
G HELLS helicase, lymphoid specific acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:3510059|PMID:15448183) MGI
Ensembl
PMID:15448183 GO_REF:0000107 MGI:3510059 NCBI chr10:91,282,330...91,344,156
Ensembl chr10:94,790,292...94,847,209
JBrowse link
G HMGA2 high mobility group AT-hook 2 involved_in ISO (PMID:16901784) UniProt PMID:16901784 NCBI chr12:22,954,946...23,096,623 JBrowse link
G KMT2D lysine methyltransferase 2D involved_in ISO (MGI:4849597|PMID:20808952) UniProt PMID:20808952 MGI:4849597 NCBI chr12:39,689,463...39,731,904
Ensembl chr12:40,575,083...40,608,661
JBrowse link
G L3MBTL1 L3MBTL histone methyl-lysine binding protein 1 involved_in ISO (PMID:17540172) ComplexPortal PMID:17540172 NCBI chr20:39,846,011...39,889,267 JBrowse link
G LOC100970460 histone H1.0 involved_in IEA Ensembl GO_REF:0000107 NCBI chr22:18,720,235...18,722,440
Ensembl chr22:36,551,693...36,552,277
JBrowse link
G MECP2 methyl-CpG binding protein 2 acts_upstream_of_or_within ISO (MGI:3530434|PMID:15608638) MGI PMID:15608638 MGI:3530434 NCBI chr  X:143,571,864...143,647,192
Ensembl chr  X:153,465,204...153,527,854
JBrowse link
G PPM1D protein phosphatase, Mg2+/Mn2+ dependent 1D involved_in IEA Ensembl GO_REF:0000107 NCBI chr17:54,698,338...54,761,889
Ensembl chr17:59,824,566...59,887,015
JBrowse link
G RB1 RB transcriptional corepressor 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr13:29,453,872...29,624,665
Ensembl chr13:48,155,795...48,324,575
JBrowse link
G SIRT1 sirtuin 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr10:64,368,878...64,401,684
Ensembl chr10:66,681,598...66,715,069
JBrowse link
G SMARCA5 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 4:135,874,888...135,917,096
Ensembl chr 4:147,174,060...147,214,809
JBrowse link
G TNP1 transition protein 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr2B:104,122,748...104,123,349
Ensembl chr2B:222,723,606...222,724,212
JBrowse link
G UBR2 ubiquitin protein ligase E3 component n-recognin 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 6:42,150,409...42,282,486
Ensembl chr 6:43,449,154...43,579,224
JBrowse link
inactivation of paternal X chromosome term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G PRDM14 PR/SET domain 14 acts_upstream_of_or_within ISO (MGI:5548017|PMID:24268575) MGI PMID:24268575 MGI:5548017 NCBI chr 8:66,578,674...66,599,360
Ensembl chr 8:68,240,741...68,260,263
JBrowse link
inactivation of X chromosome by genomic imprinting term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G PCGF3 polycomb group ring finger 3 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 4:802,990...874,063
Ensembl chr 4:746,137...805,443
JBrowse link
G PCGF5 polycomb group ring finger 5 involved_in IEA Ensembl GO_REF:0000107 NCBI chr10:87,908,298...88,029,923
Ensembl chr10:91,492,201...91,549,737
JBrowse link
inactivation of X chromosome by heterochromatin assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G SMCHD1 structural maintenance of chromosomes flexible hinge domain containing 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr18:11,479,742...11,627,035
Ensembl chr18:13,785,912...13,933,887
JBrowse link
negative regulation of DNA methylation-dependent heterochromatin assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AICDA activation induced cytidine deaminase involved_in IEA Ensembl GO_REF:0000107 NCBI chr12:8,688,392...8,699,008
Ensembl chr12:8,904,273...8,913,917
JBrowse link
G APOBEC1 apolipoprotein B mRNA editing enzyme catalytic subunit 1 involved_in ISO (MGI:5285126|PMID:21496894) UniProt PMID:21496894 MGI:5285126 NCBI chr12:7,777,734...7,793,960
Ensembl chr12:7,939,262...7,944,203
JBrowse link
G TET1 tet methylcytosine dioxygenase 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr10:65,036,313...65,168,051
Ensembl chr10:67,586,586...67,703,160
JBrowse link
negative regulation of gene expression, epigenetic term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G BMI1 BMI1 proto-oncogene, polycomb ring finger involved_in ISO (PMID:24623306) UniProt PMID:24623306 NCBI chr10:22,477,755...22,487,894 JBrowse link
G CREBZF CREB/ATF bZIP transcription factor involved_in IEA Ensembl GO_REF:0000107 NCBI chr11:80,713,916...80,721,085
Ensembl chr11:84,322,496...84,329,636
JBrowse link
G DNMT3B DNA methyltransferase 3 beta involved_in ISO (MGI:3765099|PMID:18056424) UniProt PMID:18056424 MGI:3765099 NCBI chr20:29,049,993...29,096,957
Ensembl chr20:30,186,069...30,215,487
JBrowse link
G EPC1 enhancer of polycomb homolog 1 acts_upstream_of_or_within
involved_in
ISO
IEA
(PMID:10976108) MGI
Ensembl
PMID:10976108 GO_REF:0000107 NCBI chr10:32,398,557...32,509,146
Ensembl chr10:32,985,456...33,095,070
JBrowse link
G EZH2 enhancer of zeste 2 polycomb repressive complex 2 subunit involved_in IEA Ensembl GO_REF:0000107 NCBI chr 7:140,536,962...140,613,104
Ensembl chr 7:153,017,590...153,059,726
JBrowse link
G LHX2 LIM homeobox 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 9:95,132,445...95,154,130
Ensembl chr 9:123,655,845...123,676,796
JBrowse link
G LOC100974647 core histone macro-H2A.2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr10:66,526,013...66,585,568
Ensembl chr10:69,077,456...69,114,194
JBrowse link
G LOC100974858 core histone macro-H2A.1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 5:130,727,065...130,791,932
Ensembl chr 5:136,868,521...136,933,834
JBrowse link
G MORC2 MORC family CW-type zinc finger 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr22:11,912,043...11,995,497
Ensembl chr22:29,753,241...29,795,632
JBrowse link
G MPHOSPH8 M-phase phosphoprotein 8 involved_in IEA Ensembl GO_REF:0000107 NCBI chr13:932,620...999,853
Ensembl chr13:19,278,149...19,316,389
JBrowse link
G PPHLN1 periphilin 1 involved_in ISO (PMID:26022416), (PMID:28581500) UniProt PMID:26022416 PMID:28581500 NCBI chr12:46,271,425...46,392,128
Ensembl chr12:47,125,110...47,256,615
JBrowse link
G PPM1D protein phosphatase, Mg2+/Mn2+ dependent 1D involved_in IEA Ensembl GO_REF:0000107 NCBI chr17:54,698,338...54,761,889
Ensembl chr17:59,824,566...59,887,015
JBrowse link
G RIF1 replication timing regulatory factor 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr2B:38,721,658...38,818,488
Ensembl chr2B:155,985,960...156,052,926
JBrowse link
G SIRT6 sirtuin 6 involved_in IEA Ensembl GO_REF:0000107 NCBI chr19:3,196,092...3,204,602
Ensembl chr19:4,146,057...4,154,126
JBrowse link
G SMYD5 SMYD family member 5 involved_in IEA Ensembl GO_REF:0000107 NCBI chr2A:73,267,007...73,280,006
Ensembl chr2A:74,755,794...74,768,776
JBrowse link
G SPI1 Spi-1 proto-oncogene involved_in IEA Ensembl GO_REF:0000107 NCBI chr11:47,301,245...47,326,891
Ensembl chr11:47,853,991...47,880,259
JBrowse link
G TASOR transcription activation suppressor involved_in ISO (PMID:26022416), (PMID:28581500), (PMID:29211708) UniProt PMID:26022416 PMID:28581500 PMID:29211708 NCBI chr 3:56,555,945...56,619,151
Ensembl chr 3:57,771,656...57,834,077
JBrowse link
G TRIM27 tripartite motif containing 27 acts_upstream_of_or_within
involved_in
ISO
IEA
(PMID:10976108) MGI
Ensembl
PMID:10976108 GO_REF:0000107 NCBI chr 6:28,722,505...28,743,484
Ensembl chr 6:29,390,423...29,411,308
JBrowse link
negative regulation of ribosomal DNA heterochromatin assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G PHF2 PHD finger protein 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 9:64,700,151...64,803,737
Ensembl chr 9:92,815,392...92,863,817
JBrowse link
G PHF8 PHD finger protein 8 involved_in IEA Ensembl GO_REF:0000107 NCBI chr  X:46,144,815...46,250,594
Ensembl chr  X:54,250,970...54,355,913
JBrowse link
pericentric heterochromatin assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CENPV centromere protein V involved_in ISO (PMID:18772885) UniProt PMID:18772885 NCBI chr17:35,247,664...35,258,656 JBrowse link
G DICER1 dicer 1, ribonuclease III acts_upstream_of_or_within ISO (MGI:3528782|PMID:15713842) MGI PMID:15713842 MGI:3528782 NCBI chr14:75,709,029...75,780,779
Ensembl chr14:95,036,385...95,107,940
JBrowse link
G HELLS helicase, lymphoid specific involved_in IEA Ensembl GO_REF:0000107 NCBI chr10:91,282,330...91,344,156
Ensembl chr10:94,790,292...94,847,209
JBrowse link
G LOC100970414 histone H3.3A acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:5694896|PMID:26159997) MGI
Ensembl
PMID:26159997 GO_REF:0000107 MGI:5694896 NCBI chr 1:201,523,670...201,533,005
Ensembl chr 1:206,520,109...206,529,447
JBrowse link
G LOC100988671 histone H3.3A acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:5694896|PMID:26159997) MGI
Ensembl
PMID:26159997 GO_REF:0000107 MGI:5694896 NCBI chr17:69,728,165...69,730,519
Ensembl chr17:75,277,614...75,281,106
JBrowse link
positive regulation of DNA methylation-dependent heterochromatin assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ATF7IP activating transcription factor 7 interacting protein involved_in IEA Ensembl GO_REF:0000107 NCBI chr12:14,373,084...14,504,286
Ensembl chr12:14,789,794...14,900,411
JBrowse link
G DNMT1 DNA methyltransferase 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr19:9,681,847...9,745,334
Ensembl chr19:10,342,478...10,406,972
JBrowse link
G MORC2 MORC family CW-type zinc finger 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr22:11,912,043...11,995,497
Ensembl chr22:29,753,241...29,795,632
JBrowse link
G MPHOSPH8 M-phase phosphoprotein 8 involved_in IEA Ensembl GO_REF:0000107 NCBI chr13:932,620...999,853
Ensembl chr13:19,278,149...19,316,389
JBrowse link
G PPHLN1 periphilin 1 involved_in ISO (PMID:28581500) UniProt PMID:28581500 NCBI chr12:46,271,425...46,392,128
Ensembl chr12:47,125,110...47,256,615
JBrowse link
G RESF1 retroelement silencing factor 1 involved_in ISO (MGI:6271895|PMID:29728365) UniProt PMID:29728365 MGI:6271895 NCBI chr12:54,238,276...54,272,288
Ensembl chr12:56,829,272...56,863,359
JBrowse link
G SETDB1 SET domain bifurcated histone lysine methyltransferase 1 involved_in ISO (PMID:24623306), (PMID:27732843)
(MGI:5440670|PMID:20164836), (MGI:6271895|PMID:29728365)
UniProt PMID:20164836 PMID:24623306 PMID:27732843 PMID:29728365 MGI:5440670 MGI:6271895 NCBI chr 1:126,275,719...126,314,043
Ensembl chr 1:129,925,009...129,962,442
JBrowse link
G TASOR transcription activation suppressor involved_in ISO (PMID:28581500), (PMID:29211708) UniProt PMID:28581500 PMID:29211708 NCBI chr 3:56,555,945...56,619,151
Ensembl chr 3:57,771,656...57,834,077
JBrowse link
G TRIM28 tripartite motif containing 28 involved_in IEA Ensembl GO_REF:0000107 NCBI chr19:55,557,130...55,563,802
Ensembl chr19:64,371,477...64,377,144
JBrowse link
G ZNF304 zinc finger protein 304 involved_in IEA Ensembl GO_REF:0000107 NCBI chr19:54,365,820...54,374,436
Ensembl chr19:63,198,736...63,204,914
JBrowse link
positive regulation of heterochromatin assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CDK2 cyclin dependent kinase 2 involved_in ISO (PMID:20935635) UniProt PMID:20935635 NCBI chr12:32,940,225...32,946,236
Ensembl chr12:33,189,934...33,195,945
JBrowse link
G SIN3A SIN3 transcription regulator family member A involved_in IEA Ensembl GO_REF:0000107 NCBI chr15:54,285,587...54,371,376
Ensembl chr15:73,881,500...73,966,506
JBrowse link
G TPR translocated promoter region, nuclear basket protein involved_in IEA Ensembl GO_REF:0000107 NCBI chr 1:161,842,037...161,903,567
Ensembl chr 1:165,993,726...166,055,223
JBrowse link
random inactivation of X chromosome term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CDYL chromodomain Y like involved_in IEA Ensembl GO_REF:0000107 NCBI chr 6:4,607,088...4,790,742
Ensembl chr 6:4,737,306...4,976,777
JBrowse link
G RLIM ring finger protein, LIM domain interacting involved_in IEA Ensembl GO_REF:0000107 NCBI chr  X:63,834,345...63,865,874
Ensembl chr  X:73,959,365...73,982,412
JBrowse link
rDNA heterochromatin assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G BAZ2A bromodomain adjacent to zinc finger domain 2A acts_upstream_of_or_within
involved_in
ISO (MGI:3653583|PMID:16678107)
(MGI:3587127|PMID:16085498), (MGI:3852313|PMID:12198165), (MGI:3852588|PMID:19578370)
(MGI:4462332|PMID:20168299)
MGI
UniProt
PMID:12198165 PMID:16085498 PMID:16678107 PMID:19578370 PMID:20168299 MGI:3587127 MGI:3653583 MGI:3852313 MGI:3852588 MGI:4462332 NCBI chr12:32,274,240...32,313,839
Ensembl chr12:32,529,634...32,566,248
JBrowse link
G BEND3 BEN domain containing 3 involved_in IEA InterPro
Ensembl
GO_REF:0000002 GO_REF:0000107 NCBI chr 6:104,875,201...104,926,926
Ensembl chr 6:108,745,993...108,778,116
JBrowse link
G RRP8 ribosomal RNA processing 8 involved_in IEA Ensembl GO_REF:0000107 NCBI chr11:6,630,695...6,735,711
Ensembl chr11:6,415,003...6,418,414
JBrowse link
G SIRT1 sirtuin 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr10:64,368,878...64,401,684
Ensembl chr10:66,681,598...66,715,069
JBrowse link
G SMARCA5 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 4:135,874,888...135,917,096
Ensembl chr 4:147,174,060...147,214,809
JBrowse link
G SUV39H1 SUV39H1 histone lysine methyltransferase involved_in IEA Ensembl GO_REF:0000107 NCBI chr  X:40,993,911...41,007,362
Ensembl chr  X:48,855,494...48,868,131
JBrowse link
G UBTF upstream binding transcription factor acts_upstream_of_or_within ISO (MGI:3836497|PMID:19103806) MGI PMID:19103806 MGI:3836497 NCBI chr17:13,176,228...13,191,283
Ensembl chr17:13,343,349...13,356,836
JBrowse link
regulation of DNA methylation-dependent heterochromatin assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G KDM1A lysine demethylase 1A involved_in IEA Ensembl GO_REF:0000107 NCBI chr 1:22,205,624...22,269,571
Ensembl chr 1:23,153,066...23,217,692
JBrowse link
G L3MBTL3 L3MBTL histone methyl-lysine binding protein 3 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 6:127,814,847...127,938,220
Ensembl chr 6:131,922,967...132,045,708
JBrowse link
G POU5F1 POU class 5 homeobox 1 involved_in ISO (PMID:19736317) BHF-UCL PMID:19736317 NCBI chr 6:30,910,421...30,916,465
Ensembl chr 6:31,775,343...31,781,426
JBrowse link
G SAMD1 sterile alpha motif domain containing 1 involved_in ISO (PMID:33980486) UniProt PMID:33980486 NCBI chr19:13,653,166...13,656,397 JBrowse link
regulation of dosage compensation by inactivation of X chromosome term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G HCFC1 host cell factor C1 involved_in ISO (MGI:6207704|PMID:24842875) ComplexPortal PMID:24842875 MGI:6207704 NCBI chr  X:143,502,159...143,526,418
Ensembl chr  X:153,389,859...153,412,999
JBrowse link
G KANSL1 KAT8 regulatory NSL complex subunit 1 involved_in ISO (MGI:6207704|PMID:24842875) ComplexPortal PMID:24842875 MGI:6207704 NCBI chr17:11,508,245...11,705,023
Ensembl chr17:11,296,318...11,456,593
JBrowse link
G KANSL2 KAT8 regulatory NSL complex subunit 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr12:40,063,603...40,092,393
Ensembl chr12:40,941,614...40,970,079
JBrowse link
G KANSL3 KAT8 regulatory NSL complex subunit 3 involved_in IEA Ensembl GO_REF:0000107 NCBI chr2A:102,675,259...102,720,426
Ensembl chr2A:97,522,746...97,561,016
JBrowse link
G KAT8 lysine acetyltransferase 8 involved_in IEA Ensembl GO_REF:0000107 NCBI chr16:23,837,540...23,851,376
Ensembl chr16:31,486,098...31,500,185
JBrowse link
G MCRS1 microspherule protein 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr12:39,183,112...39,192,925
Ensembl chr12:40,073,860...40,083,655
JBrowse link
G MSL1 MSL complex subunit 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr17:17,152,296...17,167,127
Ensembl chr17:17,373,780...17,387,351
JBrowse link
G MSL2 MSL complex subunit 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 3:133,203,579...133,252,294
Ensembl chr 3:140,667,652...140,714,294
JBrowse link
G MSL3 MSL complex subunit 3 involved_in ISO (MGI:6207704|PMID:24842875) ComplexPortal PMID:24842875 MGI:6207704 NCBI chr  X:4,385,861...4,403,467
Ensembl chr  X:11,672,109...11,693,468
JBrowse link
G OGT O-linked N-acetylglucosamine (GlcNAc) transferase involved_in IEA Ensembl GO_REF:0000107 NCBI chr  X:60,798,219...60,840,948
Ensembl chr  X:70,852,687...70,894,921
JBrowse link
G PHF20 PHD finger protein 20 involved_in IEA Ensembl GO_REF:0000107 NCBI chr20:32,099,066...32,283,298
Ensembl chr20:33,253,482...33,401,629
JBrowse link
G RLIM ring finger protein, LIM domain interacting acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:5581575|PMID:24613346) MGI
Ensembl
PMID:24613346 GO_REF:0000107 MGI:5581575 NCBI chr  X:63,834,345...63,865,874
Ensembl chr  X:73,959,365...73,982,412
JBrowse link
G WDR5 WD repeat domain 5 involved_in ISO (MGI:6207704|PMID:24842875) ComplexPortal PMID:24842875 MGI:6207704 NCBI chr 9:105,241,415...105,265,925
Ensembl chr 9:133,848,185...133,872,889
JBrowse link
regulation of gene expression by genomic imprinting term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ARID4A AT-rich interaction domain 4A acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:3686546|PMID:17043311) MGI
Ensembl
PMID:17043311 GO_REF:0000107 MGI:3686546 NCBI chr14:38,890,688...38,965,928
Ensembl chr14:57,159,399...57,233,825
JBrowse link
G ARID4B AT-rich interaction domain 4B acts_upstream_of_or_within ISO (MGI:3686546|PMID:17043311) MGI PMID:17043311 MGI:3686546 NCBI chr 1:210,711,946...210,874,034
Ensembl chr 1:215,729,783...215,888,412
JBrowse link
G BRCA1 BRCA1 DNA repair associated involved_in IEA Ensembl GO_REF:0000107 NCBI chr17:14,197,946...14,279,064
Ensembl chr17:14,428,526...14,506,815
JBrowse link
G CTCF CCCTC-binding factor acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:2450195|PMID:12461525), (MGI:3045676|PMID:15143173)
(MGI:3044090|PMID:14716017)
MGI
Ensembl
PMID:12461525 PMID:14716017 PMID:15143173 GO_REF:0000107 MGI:2450195 MGI:3044090 MGI:3045676 NCBI chr16:47,906,503...47,983,271
Ensembl chr16:67,302,952...67,372,041
JBrowse link
G CTCFL CCCTC-binding factor like involved_in IEA Ensembl GO_REF:0000107 NCBI chr20:53,836,295...53,865,974
Ensembl chr20:55,114,405...55,143,717
JBrowse link
G DNMT3A DNA methyltransferase 3 alpha acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:2178074|PMID:11934864)
(MGI:3045942|PMID:15215868)
MGI
Ensembl
PMID:11934864 PMID:15215868 GO_REF:0000107 MGI:2178074 MGI:3045942 NCBI chr2A:25,229,593...25,344,733
Ensembl chr2A:25,331,095...25,412,605
JBrowse link
G DNMT3B DNA methyltransferase 3 beta acts_upstream_of_or_within ISO (MGI:2178074|PMID:11934864) MGI PMID:11934864 MGI:2178074 NCBI chr20:29,049,993...29,096,957
Ensembl chr20:30,186,069...30,215,487
JBrowse link
G EED embryonic ectoderm development acts_upstream_of_or_within ISO (MGI:2655036|PMID:12627233) MGI PMID:12627233 MGI:2655036 NCBI chr11:81,295,068...81,330,321
Ensembl chr11:84,902,330...84,937,906
JBrowse link
G GSK3A glycogen synthase kinase 3 alpha involved_in IEA Ensembl GO_REF:0000107 NCBI chr19:39,118,330...39,130,768
Ensembl chr19:47,710,197...47,726,948
JBrowse link
G GSK3B glycogen synthase kinase 3 beta involved_in ISO (MGI:5009774|PMID:21047779) BHF-UCL PMID:21047779 MGI:5009774 NCBI chr 3:116,943,205...117,215,001
Ensembl chr 3:123,861,379...124,126,771
JBrowse link
G KCNQ1 potassium voltage-gated channel subfamily Q member 1 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:3054495|PMID:15340049)
(MGI:2389526|PMID:12410230)
MGI
Ensembl
PMID:12410230 PMID:15340049 GO_REF:0000107 MGI:2389526 MGI:3054495 NCBI chr11:2,469,750...2,874,467 JBrowse link
G KDM1B lysine demethylase 1B acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:4358629|PMID:19727073) MGI
Ensembl
PMID:19727073 GO_REF:0000107 MGI:4358629 NCBI chr 6:18,002,763...18,071,598
Ensembl chr 6:18,355,907...18,425,552
JBrowse link
G MECP2 methyl-CpG binding protein 2 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:3530434|PMID:15608638)
(PMID:15608638)
MGI
Ensembl
PMID:15608638 GO_REF:0000107 MGI:3530434 NCBI chr  X:143,571,864...143,647,192
Ensembl chr  X:153,465,204...153,527,854
JBrowse link
G PRMT7 protein arginine methyltransferase 7 involved_in IEA Ensembl
UniProt
GO_REF:0000104 GO_REF:0000107 NCBI chr16:48,687,324...48,734,883
Ensembl chr16:68,086,620...68,127,953
JBrowse link
G ZFP57 ZFP57 zinc finger protein acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:6506156|PMID:33500348) MGI
Ensembl
PMID:33500348 GO_REF:0000107 MGI:6506156 NCBI chr 6:29,476,459...29,485,480
Ensembl chr 6:30,134,263...30,143,045
JBrowse link
regulation of genetic imprinting term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CTR9 CTR9 homolog, Paf1/RNA polymerase II complex component acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:5528755|PMID:24036311) MGI
Ensembl
PMID:24036311 GO_REF:0000107 MGI:5528755 NCBI chr11:10,884,353...10,913,246
Ensembl chr11:10,610,892...10,639,808
JBrowse link
G DPPA3 developmental pluripotency associated 3 involved_in ISO (MGI:5432962|PMID:22722204), (MGI:5447615|PMID:17143267) UniProt PMID:17143267 PMID:22722204 MGI:5432962 MGI:5447615 NCBI chr12:7,834,298...7,841,064 JBrowse link
G PIK3CA phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit alpha involved_in IEA Ensembl GO_REF:0000107 NCBI chr 3:176,182,765...176,272,024
Ensembl chr 3:184,355,785...184,441,977
JBrowse link
G TET1 tet methylcytosine dioxygenase 1 acts_upstream_of_or_within ISO (MGI:5559953|PMID:24291790) MGI PMID:24291790 MGI:5559953 NCBI chr10:65,036,313...65,168,051
Ensembl chr10:67,586,586...67,703,160
JBrowse link
G TRIM28 tripartite motif containing 28 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:5319411|PMID:22495301) MGI
Ensembl
PMID:22495301 GO_REF:0000107 MGI:5319411 NCBI chr19:55,557,130...55,563,802
Ensembl chr19:64,371,477...64,377,144
JBrowse link
G ZFP42 ZFP42 zinc finger protein acts_upstream_of_or_within ISO (MGI:4940138|PMID:21233130) MGI PMID:21233130 MGI:4940138 NCBI chr 4:180,152,673...180,162,899
Ensembl chr 4:192,349,144...192,350,076
JBrowse link
G ZFP57 ZFP57 zinc finger protein involved_in ISO (MGI:6284037|PMID:30602440) UniProt PMID:30602440 MGI:6284037 NCBI chr 6:29,476,459...29,485,480
Ensembl chr 6:30,134,263...30,143,045
JBrowse link
G ZNF445 zinc finger protein 445 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 3:44,327,299...44,367,618
Ensembl chr 3:45,389,465...45,425,416
JBrowse link
regulation of ribosomal DNA heterochromatin assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G LOC100974858 core histone macro-H2A.1 NOT|involved_in ISO (PMID:24071584) UniProt PMID:24071584 NCBI chr 5:130,727,065...130,791,932
Ensembl chr 5:136,868,521...136,933,834
JBrowse link
subtelomeric heterochromatin assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G EZH1 enhancer of zeste 1 polycomb repressive complex 2 subunit involved_in ISO (MGI:892875|PMID:9214638) ARUK-UCL PMID:9214638 MGI:892875 NCBI chr17:14,572,868...14,618,012
Ensembl chr17:14,814,054...14,842,295
JBrowse link
G EZH2 enhancer of zeste 2 polycomb repressive complex 2 subunit involved_in IEA Ensembl GO_REF:0000107 NCBI chr 7:140,536,962...140,613,104
Ensembl chr 7:153,017,590...153,059,726
JBrowse link
G LOC100970414 histone H3.3A acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:5694896|PMID:26159997) MGI
Ensembl
PMID:26159997 GO_REF:0000107 MGI:5694896 NCBI chr 1:201,523,670...201,533,005
Ensembl chr 1:206,520,109...206,529,447
JBrowse link
G LOC100988671 histone H3.3A acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:5694896|PMID:26159997) MGI
Ensembl
PMID:26159997 GO_REF:0000107 MGI:5694896 NCBI chr17:69,728,165...69,730,519
Ensembl chr17:75,277,614...75,281,106
JBrowse link
G RIF1 replication timing regulatory factor 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr2B:38,721,658...38,818,488
Ensembl chr2B:155,985,960...156,052,926
JBrowse link
G SIRT6 sirtuin 6 involved_in IEA Ensembl GO_REF:0000107 NCBI chr19:3,196,092...3,204,602
Ensembl chr19:4,146,057...4,154,126
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Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 15229
    cellular process 14344
      cellular component organization or biogenesis 5571
        cellular component organization 5440
          chromatin organization 417
            regulation of gene expression, epigenetic 146
              dosage compensation + 32
              epigenetic maintenance of chromatin in transcription-competent conformation 11
              negative regulation of gene expression, epigenetic + 82
              regulation of gene expression by genomic imprinting + 17
              transvection 0
Path 2
Term Annotations click to browse term
  biological_process 15229
    cellular process 14344
      cellular component organization or biogenesis 5571
        cellular component organization 5440
          organelle organization 3303
            chromosome organization 812
              chromatin organization 417
                regulation of gene expression, epigenetic 146
                  dosage compensation + 32
                  epigenetic maintenance of chromatin in transcription-competent conformation 11
                  negative regulation of gene expression, epigenetic + 82
                  regulation of gene expression by genomic imprinting + 17
                  transvection 0
paths to the root