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ONTOLOGY REPORT - ANNOTATIONS


Term:viral RNA genome replication
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Accession:GO:0039694 term browser browse the term
Definition:The replication of a viral RNA genome.


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viral RNA genome replication term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CDC42 cell division cycle 42 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 6:80,035,034...80,089,243
Ensembl chr 6:80,035,122...80,089,233
JBrowse link
G EEA1 early endosome antigen 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 5:90,131,707...90,257,014
Ensembl chr 5:90,168,242...90,257,248
JBrowse link
G PCBP1 poly(rC) binding protein 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 3:72,378,643...72,380,364
Ensembl chr 3:72,378,648...72,380,362
JBrowse link
G PCBP2 poly(rC) binding protein 2 involved_in ISO (PMID:12414943) UniProt PMID:12414943 NCBI chr 5:18,670,124...18,703,745
Ensembl chr 5:18,673,981...18,706,838
JBrowse link
G PI4KA phosphatidylinositol 4-kinase alpha involved_in IEA Ensembl GO_REF:0000107 NCBI chr14:50,390,416...50,491,983
Ensembl chr14:50,390,408...50,491,950
JBrowse link
G PIK3C2G phosphatidylinositol-4-phosphate 3-kinase catalytic subunit type 2 gamma involved_in ISO (PMID:19376974) ParkinsonsUK-UCL PMID:19376974 NCBI chr 5:54,474,623...54,849,520
Ensembl chr 5:54,474,624...54,849,512
JBrowse link
G RAB29 RAB29, member RAS oncogene family involved_in IEA Ensembl GO_REF:0000107 NCBI chr 9:66,448,854...66,458,766
Ensembl chr 9:66,445,843...66,483,838
JBrowse link
G RAB5A RAB5A, member RAS oncogene family involved_in IEA Ensembl GO_REF:0000107 NCBI chr13:6,905,302...6,940,165
Ensembl chr13:6,905,348...6,941,553
JBrowse link
G ROCK2 Rho associated coiled-coil containing protein kinase 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 3:125,353,063...125,493,368
Ensembl chr 3:125,353,119...125,491,963
JBrowse link
modulation by host of viral RNA genome replication term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G FBXL2 F-box and leucine rich repeat protein 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr13:19,128,145...19,206,458
Ensembl chr13:19,127,358...19,221,241
JBrowse link
G FMR1 FMRP translational regulator 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr  X:120,361,232...120,400,282
Ensembl chr  X:120,361,229...120,399,835
JBrowse link
G PHB prohibitin involved_in IEA Ensembl GO_REF:0000107 NCBI chr12:25,596,520...25,609,693
Ensembl chr12:25,584,443...25,609,656
JBrowse link
G VAPB VAMP associated protein B and C involved_in ISO (PMID:19515777) AgBase PMID:19515777 NCBI chr17:58,594,749...58,644,925
Ensembl chr17:58,594,749...58,644,918
JBrowse link
negative regulation of single stranded viral RNA replication via double stranded DNA intermediate term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AICDA activation induced cytidine deaminase involved_in IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 5:62,777,236...62,787,342
Ensembl chr 5:62,777,352...62,787,483
JBrowse link
G HMGA2 high mobility group AT-hook 2 involved_in ISO (PMID:17005673) UniProt PMID:17005673 NCBI chr 5:30,188,521...30,329,635 JBrowse link
G INPP5K inositol polyphosphate-5-phosphatase K involved_in IEA Ensembl GO_REF:0000107 NCBI chr12:47,717,898...47,738,540
Ensembl chr12:47,717,907...47,738,477
JBrowse link
G MORC2 MORC family CW-type zinc finger 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr14:47,755,264...47,800,432
Ensembl chr14:47,754,282...47,799,643
JBrowse link
G MPHOSPH8 M-phase phosphoprotein 8 involved_in IEA Ensembl GO_REF:0000107 NCBI chr11:447,019...480,121
Ensembl chr11:447,052...480,121
JBrowse link
G RESF1 retroelement silencing factor 1 involved_in ISO (MGI:6271895|PMID:29728365) UniProt PMID:29728365 MGI:6271895 NCBI chr 5:42,263,560...42,299,596
Ensembl chr 5:42,261,290...42,299,514
JBrowse link
G SETDB1 SET domain bifurcated histone lysine methyltransferase 1 involved_in ISO (MGI:5440670|PMID:20164836), (MGI:6271895|PMID:29728365) UniProt PMID:20164836 PMID:29728365 MGI:5440670 MGI:6271895 NCBI chr 4:98,259,801...98,293,238
Ensembl chr 4:98,260,373...98,293,096
JBrowse link
G TASOR transcription activation suppressor involved_in ISO (PMID:29211708) UniProt PMID:29211708 NCBI chr13:38,491,048...38,557,256
Ensembl chr13:38,491,055...38,557,931
JBrowse link
G TRIM28 tripartite motif containing 28 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:3842857|PMID:19270682) Ensembl
MGI
PMID:19270682 GO_REF:0000107 MGI:3842857 NCBI chr 6:63,094,382...63,101,532
Ensembl chr 6:63,094,648...63,101,532
JBrowse link
G ZNF684 zinc finger protein 684 acts_upstream_of_or_within ISO (MGI:3842857|PMID:19270682) MGI PMID:19270682 MGI:3842857 NCBI chr 6:170,615,455...170,637,495
Ensembl chr 6:170,622,158...170,637,495
JBrowse link
negative stranded viral RNA replication term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ATG16L1 autophagy related 16 like 1 involved_in
acts_upstream_of_or_within
IBA
ISO
(PMID:21873635)
(MGI:5552992|PMID:24550300)
GO_Central
MGI
PMID:21873635 PMID:24550300 MGI:5552992 NCBI chr15:133,651,294...133,693,472
Ensembl chr15:133,651,286...133,706,038
JBrowse link
G ATG16L2 autophagy related 16 like 2 involved_in
acts_upstream_of_or_within
IBA
ISO
(PMID:21873635)
(MGI:5552992|PMID:24550300)
GO_Central
MGI
PMID:21873635 PMID:24550300 MGI:5552992 NCBI chr 9:7,346,973...7,360,189
Ensembl chr 9:7,347,001...7,365,627
JBrowse link
G ATG5 autophagy related 5 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:5552992|PMID:24550300) Ensembl
MGI
PMID:24550300 GO_REF:0000107 MGI:5552992 NCBI chr 1:72,343,950...72,520,402
Ensembl chr 1:72,270,799...72,520,453
JBrowse link
G ATG7 autophagy related 7 acts_upstream_of_or_within ISO (MGI:5552992|PMID:24550300) MGI PMID:24550300 MGI:5552992 NCBI chr13:67,301,756...67,699,141
Ensembl chr13:67,417,938...67,707,660
JBrowse link
positive regulation of single stranded viral RNA replication via double stranded DNA intermediate term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G TOP2A DNA topoisomerase II alpha involved_in IEA Ensembl GO_REF:0000107 NCBI chr12:22,001,300...22,028,452
Ensembl chr12:22,001,336...22,028,454
JBrowse link
G TOP2B DNA topoisomerase II beta involved_in IEA Ensembl GO_REF:0000107 NCBI chr13:12,507,738...12,575,042
Ensembl chr13:12,507,138...12,575,583
JBrowse link
regulation of single stranded viral RNA replication via double stranded DNA intermediate term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CXCL8 C-X-C motif chemokine ligand 8 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 8:69,932,646...69,935,861
Ensembl chr 8:69,932,643...69,935,861
JBrowse link
single stranded viral RNA replication via double stranded DNA intermediate term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G SMARCB1 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1 acts_upstream_of_or_within
involved_in
ISO
IEA
(PMID:14963118) MGI
Ensembl
PMID:14963118 GO_REF:0000107 NCBI chr14:49,874,981...49,906,043
Ensembl chr14:49,874,984...49,906,048
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 16579
    viral process 326
      viral genome replication 110
        viral RNA genome replication 31
          double stranded viral RNA replication 0
          modulation by host of viral RNA genome replication 4
          negative stranded viral RNA replication 4
          positive stranded viral RNA replication 0
          single stranded viral RNA replication via double stranded DNA intermediate + 14
Path 2
Term Annotations click to browse term
  biological_process 16579
    viral process 326
      viral life cycle 244
        viral genome replication 110
          viral RNA genome replication 31
            double stranded viral RNA replication 0
            modulation by host of viral RNA genome replication 4
            negative stranded viral RNA replication 4
            positive stranded viral RNA replication 0
            single stranded viral RNA replication via double stranded DNA intermediate + 14
paths to the root