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ONTOLOGY REPORT - ANNOTATIONS


Term:viral RNA genome replication
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Accession:GO:0039694 term browser browse the term
Definition:The replication of a viral RNA genome.


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viral RNA genome replication term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cdc42 cell division cycle 42 involved_in ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr 4:137,319,696...137,357,759
Ensembl chr 4:137,319,696...137,357,720
JBrowse link
G Eea1 early endosome antigen 1 involved_in ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr10:95,940,663...96,045,518
Ensembl chr10:95,940,650...96,045,518
JBrowse link
G Pcbp1 poly(rC) binding protein 1 involved_in ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr 6:86,524,480...86,526,189
Ensembl chr 6:86,524,492...86,526,321
JBrowse link
G Pcbp2 poly(rC) binding protein 2 involved_in ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr15:102,470,450...102,500,068
Ensembl chr15:102,470,539...102,500,061
JBrowse link
G Pi4ka phosphatidylinositol 4-kinase alpha involved_in ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr16:17,280,351...17,406,314
Ensembl chr16:17,280,351...17,406,314
JBrowse link
G Pik3c2g phosphatidylinositol-4-phosphate 3-kinase catalytic subunit type 2 gamma involved_in ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr 6:139,614,072...139,969,284
Ensembl chr 6:139,587,221...139,969,284
JBrowse link
G Rab29 RAB29, member RAS oncogene family involved_in ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr 1:131,867,210...131,872,887
Ensembl chr 1:131,867,224...131,872,887
JBrowse link
G Rab5a RAB5A, member RAS oncogene family involved_in ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr17:53,479,234...53,507,678
Ensembl chr17:53,479,234...53,507,680
JBrowse link
G Rock2 Rho-associated coiled-coil containing protein kinase 2 involved_in ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr12:16,894,978...16,988,274
Ensembl chr12:16,894,895...16,987,823
JBrowse link
modulation by host of viral RNA genome replication term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Fbxl2 F-box and leucine-rich repeat protein 2 involved_in ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr 9:113,958,557...114,026,803
Ensembl chr 9:113,963,637...114,046,191
JBrowse link
G Fmr1 FMRP translational regulator 1 involved_in ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr  X:68,678,536...68,717,963
Ensembl chr  X:68,678,541...68,717,963
JBrowse link
G Phb prohibitin involved_in IDA (MGI:6436975|PMID:29324904) UniProt PMID:29324904 MGI:6436975 NCBI chr11:95,666,957...95,680,773
Ensembl chr11:95,666,957...95,680,773
JBrowse link
G Vapb vesicle-associated membrane protein, associated protein B and C involved_in ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr 2:173,737,571...173,784,336
Ensembl chr 2:173,737,511...173,784,339
JBrowse link
negative regulation of single stranded viral RNA replication via double stranded DNA intermediate term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Aicda activation-induced cytidine deaminase involved_in IBA (MGI:6201960|PMID:21873635) GO_Central PMID:21873635 MGI:6201960 NCBI chr 6:122,553,809...122,564,180
Ensembl chr 6:122,553,801...122,564,180
JBrowse link
G Apobec3 apolipoprotein B mRNA editing enzyme, catalytic polypeptide 3 involved_in IBA (MGI:6201960|PMID:21873635) GO_Central PMID:21873635 MGI:6201960 NCBI chr15:79,892,058...79,918,218
Ensembl chr15:79,891,659...79,915,906
JBrowse link
G Hmga2 high mobility group AT-hook 2 involved_in ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr10:120,361,268...120,476,469
Ensembl chr10:120,361,275...120,476,469
JBrowse link
G Inpp5k inositol polyphosphate 5-phosphatase K involved_in ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr11:75,629,067...75,648,865
Ensembl chr11:75,630,988...75,648,871
JBrowse link
G Morc2a microrchidia 2A involved_in IMP
ISO
(MGI:6271895|PMID:29728365) UniProt
MGI
PMID:29728365 GO_REF:0000096 MGI:4834177 MGI:6271895 NCBI chr11:3,649,189...3,690,477
Ensembl chr11:3,649,191...3,690,477
JBrowse link
G Morc2b microrchidia 2B involved_in ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr17:33,135,588...33,150,499
Ensembl chr17:33,113,351...33,139,683
JBrowse link
G Mphosph8 M-phase phosphoprotein 8 involved_in ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr14:56,668,235...56,697,430
Ensembl chr14:56,668,248...56,697,430
JBrowse link
G Resf1 retroelement silencing factor 1 involved_in IMP (MGI:6271895|PMID:29728365) UniProt PMID:29728365 MGI:6271895 NCBI chr 6:149,309,409...149,335,663
Ensembl chr 6:149,309,414...149,335,663
JBrowse link
G Setdb1 SET domain, bifurcated 1 involved_in IMP (MGI:5440670|PMID:20164836), (MGI:6271895|PMID:29728365) UniProt PMID:20164836 PMID:29728365 MGI:5440670 MGI:6271895 NCBI chr 3:95,323,525...95,357,202
Ensembl chr 3:95,323,525...95,357,202
JBrowse link
G Tasor transcription activation suppressor involved_in ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr14:27,423,674...27,483,555
Ensembl chr14:27,428,834...27,483,555
JBrowse link
G Trim28 tripartite motif-containing 28 involved_in
acts_upstream_of_or_within
IMP
IGI
IDA
(MGI:5440670|PMID:20164836)
(MGI:3842857|PMID:19270682)
UniProt
MGI
PMID:19270682 PMID:20164836 MGI:3842857 MGI:5440670 NCBI chr 7:13,024,152...13,031,032
Ensembl chr 7:12,999,114...13,031,035
JBrowse link
G Zfp809 zinc finger protein 809 acts_upstream_of_or_within IGI
IDA
IMP
(MGI:3842857|PMID:19270682) MGI PMID:19270682 MGI:3842857 NCBI chr 9:22,225,667...22,254,117
Ensembl chr 9:22,225,714...22,243,354
JBrowse link
negative stranded viral RNA replication term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Atg16l1 autophagy related 16-like 1 (S. cerevisiae) acts_upstream_of_or_within
involved_in
IMP
IBA
(MGI:5552992|PMID:24550300)
(MGI:6201960|PMID:21873635)
MGI
GO_Central
PMID:21873635 PMID:24550300 MGI:5552992 MGI:6201960 NCBI chr 1:87,756,007...87,792,428
Ensembl chr 1:87,755,870...87,792,428
JBrowse link
G Atg16l2 autophagy related 16-like 2 (S. cerevisiae) acts_upstream_of_or_within
involved_in
IMP
IBA
(MGI:5552992|PMID:24550300)
(MGI:6201960|PMID:21873635)
MGI
GO_Central
PMID:21873635 PMID:24550300 MGI:5552992 MGI:6201960 NCBI chr 7:101,286,325...101,302,267
Ensembl chr 7:101,263,034...101,302,251
JBrowse link
G Atg5 autophagy related 5 acts_upstream_of_or_within IMP (MGI:5552992|PMID:24550300) MGI PMID:24550300 MGI:5552992 NCBI chr10:44,268,322...44,364,299
Ensembl chr10:44,268,358...44,364,291
JBrowse link
G Atg7 autophagy related 7 acts_upstream_of_or_within IMP (MGI:5552992|PMID:24550300) MGI PMID:24550300 MGI:5552992 NCBI chr 6:114,643,127...114,860,604
Ensembl chr 6:114,643,097...114,860,614
JBrowse link
positive regulation of single stranded viral RNA replication via double stranded DNA intermediate term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Top2a topoisomerase (DNA) II alpha involved_in ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr11:98,992,947...99,024,199
Ensembl chr11:98,992,943...99,024,189
JBrowse link
G Top2b topoisomerase (DNA) II beta involved_in ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr14:16,365,206...16,430,787
Ensembl chr14:16,365,179...16,435,462
JBrowse link
regulation of single stranded viral RNA replication via double stranded DNA intermediate term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cxcl15 chemokine (C-X-C motif) ligand 15 involved_in ISO (PMID:11483765) UniProt PMID:11483765 NCBI chr 5:90,794,534...90,803,067
Ensembl chr 5:90,794,534...90,803,067
JBrowse link
single stranded viral RNA replication via double stranded DNA intermediate term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Smarcb1 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1 acts_upstream_of_or_within ISO MGI GO_REF:0000008 MGI:2154458 NCBI chr10:75,896,769...75,921,614
Ensembl chr10:75,896,769...75,921,617
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 28616
    viral process 382
      viral genome replication 131
        viral RNA genome replication 33
          double stranded viral RNA replication 0
          modulation by host of viral RNA genome replication 4
          negative stranded viral RNA replication 4
          positive stranded viral RNA replication 0
          single stranded viral RNA replication via double stranded DNA intermediate + 16
Path 2
Term Annotations click to browse term
  biological_process 28616
    viral process 382
      viral life cycle 277
        viral genome replication 131
          viral RNA genome replication 33
            double stranded viral RNA replication 0
            modulation by host of viral RNA genome replication 4
            negative stranded viral RNA replication 4
            positive stranded viral RNA replication 0
            single stranded viral RNA replication via double stranded DNA intermediate + 16
paths to the root