Send us a Message



Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   

ONTOLOGY REPORT - ANNOTATIONS


Term:viral RNA genome replication
go back to main search page
Accession:GO:0039694 term browser browse the term
Definition:The replication of a viral RNA genome.


show annotations for term's descendants           Sort by:
 
viral RNA genome replication term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G EEA1 early endosome antigen 1 involved_in ISO (PMID:19376974) ParkinsonsUK-UCL PMID:19376974 NCBI chr15:33,145,250...33,234,899
Ensembl chr15:33,148,637...33,256,669
JBrowse link
G LOC403934 cell division cycle 42 involved_in ISO (PMID:19376974) ParkinsonsUK-UCL PMID:19376974 NCBI chr 2:77,153,276...77,169,947
Ensembl chr 2:77,153,095...77,199,211
JBrowse link
G PCBP1 poly(rC) binding protein 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr10:68,686,278...68,687,916 JBrowse link
G PCBP2 poly(rC) binding protein 2 involved_in ISO (PMID:12414943) UniProt PMID:12414943 NCBI chr27:1,736,264...1,759,416 JBrowse link
G PI4KA phosphatidylinositol 4-kinase alpha involved_in ISO (PMID:19376974) ParkinsonsUK-UCL PMID:19376974 NCBI chr26:30,630,693...30,749,158
Ensembl chr26:30,630,261...30,749,126
JBrowse link
G PIK3C2G phosphatidylinositol-4-phosphate 3-kinase catalytic subunit type 2 gamma involved_in ISO (PMID:19376974) ParkinsonsUK-UCL PMID:19376974 NCBI chr27:28,446,629...28,818,198
Ensembl chr27:28,424,899...28,796,902
JBrowse link
G RAB29 RAB29, member RAS oncogene family involved_in ISO (PMID:19376974) ParkinsonsUK-UCL PMID:19376974 NCBI chr38:2,196,618...2,204,150
Ensembl chr38:2,198,040...2,203,896
JBrowse link
G RAB5A RAB5A, member RAS oncogene family involved_in IEA Ensembl GO_REF:0000107 NCBI chr23:23,303,650...23,333,571
Ensembl chr23:23,304,940...23,332,206
JBrowse link
G ROCK2 Rho associated coiled-coil containing protein kinase 2 involved_in ISO (PMID:19376974) ParkinsonsUK-UCL PMID:19376974 NCBI chr17:7,931,786...8,012,484
Ensembl chr17:7,934,739...8,178,707
JBrowse link
modulation by host of viral RNA genome replication term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G FBXL2 F-box and leucine rich repeat protein 2 involved_in ISO (PMID:15893726) UniProt PMID:15893726 NCBI chr23:3,498,253...3,606,016
Ensembl chr23:3,498,979...3,607,093
JBrowse link
G FMR1 FMRP translational regulator 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr  X:116,249,079...116,287,008
Ensembl chr  X:116,249,142...116,321,439
JBrowse link
G PHB prohibitin involved_in ISO (MGI:6436975|PMID:29324904) UniProt PMID:29324904 MGI:6436975 NCBI chr 9:25,525,711...25,536,722
Ensembl chr 9:25,526,649...25,536,722
JBrowse link
G VAPB VAMP associated protein B and C involved_in ISO (PMID:19515777) AgBase PMID:19515777 NCBI chr24:43,182,158...43,238,019
Ensembl chr24:43,182,196...43,231,336
JBrowse link
negative regulation of single stranded viral RNA replication via double stranded DNA intermediate term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G APOBEC3Z3 apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 3Z3 involved_in IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr10:25,910,973...25,917,508
Ensembl chr10:25,911,291...25,913,808
JBrowse link
G HMGA2 high mobility group AT-hook 2 involved_in ISO (PMID:17005673) UniProt PMID:17005673 NCBI chr10:8,348,101...8,491,435 JBrowse link
G INPP5K inositol polyphosphate-5-phosphatase K involved_in ISS UniProt GO_REF:0000024 NCBI chr 9:45,660,445...45,680,407
Ensembl chr 9:45,660,446...45,680,363
JBrowse link
G LOC482454 zinc finger protein 684 acts_upstream_of_or_within ISO (MGI:3842857|PMID:19270682) MGI PMID:19270682 MGI:3842857 NCBI chr15:2,476,742...2,502,729
Ensembl chr15:2,477,400...2,503,684
JBrowse link
G MORC2 MORC family CW-type zinc finger 2 involved_in ISO (PMID:29211708)
(MGI:6271895|PMID:29728365)
UniProt PMID:29211708 PMID:29728365 MGI:6271895 NCBI chr26:23,951,704...23,993,620
Ensembl chr26:23,953,130...23,992,431
JBrowse link
G MPHOSPH8 M-phase phosphoprotein 8 involved_in IEA Ensembl GO_REF:0000107 NCBI chr25:18,392,706...18,443,241
Ensembl chr25:18,392,409...18,443,241
JBrowse link
G RESF1 retroelement silencing factor 1 involved_in ISO (MGI:6271895|PMID:29728365) UniProt PMID:29728365 MGI:6271895 NCBI chr27:16,829,611...16,856,960
Ensembl chr27:16,829,968...16,839,166
JBrowse link
G SETDB1 SET domain bifurcated histone lysine methyltransferase 1 involved_in ISO (MGI:5440670|PMID:20164836), (MGI:6271895|PMID:29728365) UniProt PMID:20164836 PMID:29728365 MGI:5440670 MGI:6271895 NCBI chr17:60,035,819...60,069,721
Ensembl chr17:60,037,379...60,069,551
JBrowse link
G TASOR transcription activation suppressor involved_in ISO (PMID:29211708) UniProt PMID:29211708 NCBI chr20:33,665,231...33,713,264
Ensembl chr20:33,646,000...33,712,936
JBrowse link
G TRIM28 tripartite motif containing 28 involved_in
acts_upstream_of_or_within
ISO (MGI:5440670|PMID:20164836)
(MGI:3842857|PMID:19270682)
UniProt
MGI
PMID:19270682 PMID:20164836 MGI:3842857 MGI:5440670 NCBI chr 1:99,408,920...99,415,432
Ensembl chr 1:99,408,925...99,415,146
JBrowse link
negative stranded viral RNA replication term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ATG16L1 autophagy related 16 like 1 involved_in
acts_upstream_of_or_within
IBA
ISO
(PMID:21873635)
(MGI:5552992|PMID:24550300)
GO_Central
MGI
PMID:21873635 PMID:24550300 MGI:5552992 NCBI chr25:44,761,034...44,800,033
Ensembl chr25:44,761,185...44,798,672
JBrowse link
G ATG16L2 autophagy related 16 like 2 acts_upstream_of_or_within ISO (MGI:5552992|PMID:24550300) MGI PMID:24550300 MGI:5552992 NCBI chr21:25,404,667...25,433,456
Ensembl chr21:25,405,694...25,419,896
JBrowse link
G ATG5 autophagy related 5 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:5552992|PMID:24550300) Ensembl
MGI
PMID:24550300 GO_REF:0000107 MGI:5552992 NCBI chr12:63,565,859...63,692,383
Ensembl chr12:63,567,568...63,683,485
JBrowse link
G ATG7 autophagy related 7 acts_upstream_of_or_within ISO (MGI:5552992|PMID:24550300) MGI PMID:24550300 MGI:5552992 NCBI chr20:6,916,354...7,154,849
Ensembl chr20:6,916,515...7,154,800
JBrowse link
positive regulation of single stranded viral RNA replication via double stranded DNA intermediate term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G TOP2A DNA topoisomerase II alpha involved_in ISO (PMID:16712776) UniProt PMID:16712776 NCBI chr 9:22,207,501...22,237,497
Ensembl chr 9:22,207,638...22,237,496
JBrowse link
G TOP2B DNA topoisomerase II beta involved_in ISO (PMID:16712776) UniProt PMID:16712776 NCBI chr23:18,159,521...18,206,413
Ensembl chr23:18,146,095...18,206,287
JBrowse link
regulation of single stranded viral RNA replication via double stranded DNA intermediate term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CXCL8 C-X-C motif chemokine ligand 8 involved_in IEA Ensembl GO_REF:0000107 NCBI chr13:62,435,035...62,438,354
Ensembl chr13:62,434,422...62,438,354
JBrowse link
single stranded viral RNA replication via double stranded DNA intermediate term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G SMARCB1 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1 acts_upstream_of_or_within
involved_in
ISO
IEA
(PMID:14963118) MGI
Ensembl
PMID:14963118 GO_REF:0000107 NCBI chr26:28,692,610...28,728,778
Ensembl chr26:28,692,899...28,728,783
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 13863
    viral process 313
      viral genome replication 114
        viral RNA genome replication 31
          double stranded viral RNA replication 0
          modulation by host of viral RNA genome replication 4
          negative stranded viral RNA replication 4
          positive stranded viral RNA replication 0
          single stranded viral RNA replication via double stranded DNA intermediate + 14
Path 2
Term Annotations click to browse term
  biological_process 13863
    viral process 313
      viral life cycle 235
        viral genome replication 114
          viral RNA genome replication 31
            double stranded viral RNA replication 0
            modulation by host of viral RNA genome replication 4
            negative stranded viral RNA replication 4
            positive stranded viral RNA replication 0
            single stranded viral RNA replication via double stranded DNA intermediate + 14
paths to the root