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ONTOLOGY REPORT - ANNOTATIONS


Term:viral RNA genome replication
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Accession:GO:0039694 term browser browse the term
Definition:The replication of a viral RNA genome.


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viral RNA genome replication term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CDC42 cell division cycle 42 involved_in ISO (PMID:19376974) ParkinsonsUK-UCL PMID:19376974 NCBI chr 1:21,245,970...21,286,210 JBrowse link
G EEA1 early endosome antigen 1 involved_in ISO (PMID:19376974) ParkinsonsUK-UCL PMID:19376974 NCBI chr12:90,299,582...90,457,109
Ensembl chr12:93,611,628...93,767,583
JBrowse link
G PCBP1 poly(rC) binding protein 1 involved_in ISO (PMID:12414943) UniProt PMID:12414943 NCBI chr2A:70,144,217...70,145,938
Ensembl chr2A:71,258,331...71,261,658
JBrowse link
G PCBP2 poly(rC) binding protein 2 involved_in ISO (PMID:12414943) UniProt PMID:12414943 NCBI chr12:35,273,540...35,301,292 JBrowse link
G PI4KA phosphatidylinositol 4-kinase alpha involved_in ISO (PMID:19376974) ParkinsonsUK-UCL PMID:19376974 NCBI chr22:2,931,523...3,082,475 JBrowse link
G PIK3C2G phosphatidylinositol-4-phosphate 3-kinase catalytic subunit type 2 gamma involved_in ISO (PMID:19376974) ParkinsonsUK-UCL PMID:19376974 NCBI chr12:18,258,487...18,644,464
Ensembl chr12:18,664,631...19,030,493
JBrowse link
G RAB29 RAB29, member RAS oncogene family involved_in ISO (PMID:19376974) ParkinsonsUK-UCL PMID:19376974 NCBI chr 1:181,377,018...181,384,496
Ensembl chr 1:185,661,317...185,668,066
JBrowse link
G RAB5A RAB5A, member RAS oncogene family involved_in ISO (PMID:19376974) ParkinsonsUK-UCL PMID:19376974 NCBI chr 3:19,866,110...19,903,701
Ensembl chr 3:20,197,067...20,234,579
JBrowse link
G ROCK2 Rho associated coiled-coil containing protein kinase 2 involved_in ISO (PMID:19376974) ParkinsonsUK-UCL PMID:19376974 NCBI chr2A:11,167,353...11,331,339
Ensembl chr2A:11,318,370...11,478,986
JBrowse link
modulation by host of viral RNA genome replication term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G FBXL2 F-box and leucine rich repeat protein 2 involved_in ISO (PMID:15893726) UniProt PMID:15893726 NCBI chr 3:33,199,436...33,308,831
Ensembl chr 3:33,501,525...33,610,039
JBrowse link
G FMR1 FMRP translational regulator 1 involved_in ISO (PMID:24514761) UniProt PMID:24514761 NCBI chr  X:136,937,889...136,976,828
Ensembl chr  X:147,365,748...147,405,321
JBrowse link
G PHB prohibitin involved_in ISO (MGI:6436975|PMID:29324904) UniProt PMID:29324904 MGI:6436975 NCBI chr17:8,189,555...8,200,491
Ensembl chr17:8,175,968...8,186,790
JBrowse link
G VAPB VAMP associated protein B and C involved_in ISO (PMID:19515777) AgBase PMID:19515777 NCBI chr20:54,736,035...54,798,155
Ensembl chr20:56,010,782...56,064,363
JBrowse link
negative regulation of single stranded viral RNA replication via double stranded DNA intermediate term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G APOBEC3D apolipoprotein B mRNA editing enzyme catalytic subunit 3D involved_in ISO (PMID:21835787) UniProt PMID:21835787 NCBI chr22:19,931,452...19,942,829 JBrowse link
G APOBEC3F apolipoprotein B mRNA editing enzyme catalytic subunit 3F involved_in ISO (PMID:17121840), (PMID:21835787) UniProt PMID:17121840 PMID:21835787 NCBI chr22:19,950,036...19,966,002 JBrowse link
G APOBEC3G apolipoprotein B mRNA editing enzyme catalytic subunit 3G involved_in ISO (PMID:16571802), (PMID:17121840), (PMID:21835787) UniProt PMID:16571802 PMID:17121840 PMID:21835787 NCBI chr22:19,977,184...19,994,769 JBrowse link
G APOBEC3H apolipoprotein B mRNA editing enzyme catalytic subunit 3H involved_in ISO (PMID:18779051), (PMID:21835787) UniProt PMID:18779051 PMID:21835787 NCBI chr22:20,003,585...20,010,741
Ensembl chr22:37,821,315...37,828,153
JBrowse link
G HMGA2 high mobility group AT-hook 2 involved_in ISO (PMID:17005673) UniProt PMID:17005673 NCBI chr12:22,954,946...23,096,623 JBrowse link
G INPP5K inositol polyphosphate-5-phosphatase K involved_in ISO (PMID:18774950) UniProt PMID:18774950 NCBI chr17:1,477,511...1,499,765
Ensembl chr17:1,377,312...1,399,373
JBrowse link
G MORC2 MORC family CW-type zinc finger 2 involved_in ISO (PMID:29211708)
(MGI:6271895|PMID:29728365)
UniProt PMID:29211708 PMID:29728365 MGI:6271895 NCBI chr22:11,912,043...11,995,497
Ensembl chr22:29,753,241...29,795,632
JBrowse link
G MPHOSPH8 M-phase phosphoprotein 8 involved_in ISO (PMID:29211708) UniProt PMID:29211708 NCBI chr13:932,620...999,853
Ensembl chr13:19,278,149...19,316,389
JBrowse link
G RESF1 retroelement silencing factor 1 involved_in ISO (MGI:6271895|PMID:29728365) UniProt PMID:29728365 MGI:6271895 NCBI chr12:54,238,276...54,272,288
Ensembl chr12:56,829,272...56,863,359
JBrowse link
G SETDB1 SET domain bifurcated histone lysine methyltransferase 1 involved_in ISO (MGI:5440670|PMID:20164836), (MGI:6271895|PMID:29728365) UniProt PMID:20164836 PMID:29728365 MGI:5440670 MGI:6271895 NCBI chr 1:126,275,719...126,314,043
Ensembl chr 1:129,925,009...129,962,442
JBrowse link
G TASOR transcription activation suppressor involved_in ISO (PMID:29211708) UniProt PMID:29211708 NCBI chr 3:56,555,945...56,619,151
Ensembl chr 3:57,771,656...57,834,077
JBrowse link
G TRIM28 tripartite motif containing 28 acts_upstream_of_or_within
involved_in
ISO (MGI:3842857|PMID:19270682)
(MGI:5440670|PMID:20164836)
MGI
UniProt
PMID:19270682 PMID:20164836 MGI:3842857 MGI:5440670 NCBI chr19:55,557,130...55,563,802
Ensembl chr19:64,371,477...64,377,144
JBrowse link
G ZNF684 zinc finger protein 684 acts_upstream_of_or_within ISO (MGI:3842857|PMID:19270682) MGI PMID:19270682 MGI:3842857 NCBI chr 1:39,824,037...39,841,025
Ensembl chr 1:41,145,020...41,162,094
JBrowse link
negative stranded viral RNA replication term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ATG16L1 autophagy related 16 like 1 acts_upstream_of_or_within ISO (MGI:5552992|PMID:24550300) MGI PMID:24550300 MGI:5552992 NCBI chr2B:120,479,534...120,523,563
Ensembl chr2B:239,392,990...239,436,766
JBrowse link
G ATG16L2 autophagy related 16 like 2 acts_upstream_of_or_within ISO (MGI:5552992|PMID:24550300) MGI PMID:24550300 MGI:5552992 NCBI chr11:67,893,365...67,921,794
Ensembl chr11:71,115,768...71,131,081
JBrowse link
G ATG5 autophagy related 5 acts_upstream_of_or_within ISO (MGI:5552992|PMID:24550300) MGI PMID:24550300 MGI:5552992 NCBI chr 6:103,997,824...104,140,931
Ensembl chr 6:107,871,208...108,013,807
JBrowse link
G ATG7 autophagy related 7 acts_upstream_of_or_within ISO (MGI:5552992|PMID:24550300) MGI PMID:24550300 MGI:5552992 NCBI chr 3:11,208,600...11,488,757
Ensembl chr 3:11,554,100...11,833,398
JBrowse link
positive regulation of single stranded viral RNA replication via double stranded DNA intermediate term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G TOP2A DNA topoisomerase II alpha involved_in ISO (PMID:16712776) UniProt PMID:16712776 NCBI chr17:16,872,169...16,901,605
Ensembl chr17:17,097,778...17,126,207
JBrowse link
G TOP2B DNA topoisomerase II beta involved_in ISO (PMID:16712776) UniProt PMID:16712776 NCBI chr 3:25,499,239...25,566,029
Ensembl chr 3:25,828,879...25,896,912
JBrowse link
regulation of single stranded viral RNA replication via double stranded DNA intermediate term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CXCL8 C-X-C motif chemokine ligand 8 involved_in ISO (PMID:11483765) UniProt PMID:11483765 NCBI chr 4:50,452,857...50,456,015
Ensembl chr 4:56,286,708...56,288,083
JBrowse link
single stranded viral RNA replication via double stranded DNA intermediate term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G SMARCB1 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1 acts_upstream_of_or_within ISO (PMID:14963118) MGI PMID:14963118 NCBI chr22:4,542,764...4,589,461
Ensembl chr22:22,627,982...22,673,921
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 12656
    viral process 306
      viral genome replication 113
        viral RNA genome replication 34
          double stranded viral RNA replication 0
          modulation by host of viral RNA genome replication 4
          negative stranded viral RNA replication 4
          positive stranded viral RNA replication 0
          single stranded viral RNA replication via double stranded DNA intermediate + 17
Path 2
Term Annotations click to browse term
  biological_process 12656
    viral process 306
      viral life cycle 229
        viral genome replication 113
          viral RNA genome replication 34
            double stranded viral RNA replication 0
            modulation by host of viral RNA genome replication 4
            negative stranded viral RNA replication 4
            positive stranded viral RNA replication 0
            single stranded viral RNA replication via double stranded DNA intermediate + 17
paths to the root