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ONTOLOGY REPORT - ANNOTATIONS


Term:viral RNA genome replication
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Accession:GO:0039694 term browser browse the term
Definition:The replication of a viral RNA genome.



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viral RNA genome replication term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cdc42 cell division cycle 42 involved_in ISO (PMID:19376974) RGD PMID:19376974 NCBI chr 5:149,555,069...149,593,239
Ensembl chr 5:149,553,724...149,593,111
JBrowse link
G Eea1 early endosome antigen 1 involved_in ISO (PMID:19376974) RGD PMID:19376974 NCBI chr 7:30,554,686...30,722,186
Ensembl chr 7:30,554,552...30,718,487
JBrowse link
G Pcbp1 poly(rC) binding protein 1 involved_in ISO (PMID:12414943) RGD PMID:12414943 NCBI chr 4:118,972,698...118,974,722
Ensembl chr 4:118,972,661...118,976,500
JBrowse link
G Pcbp2 poly(rC) binding protein 2 involved_in ISO (PMID:12414943) RGD PMID:12414943 NCBI chr 7:133,605,480...133,631,312
Ensembl chr 7:133,605,573...133,629,863
JBrowse link
G Pi4ka phosphatidylinositol 4-kinase alpha involved_in IEA
ISO
GO_REF:0000107
(PMID:19376974)
Ensembl
RGD
PMID:19376974 GO_REF:0000107 NCBI chr11:83,609,136...83,726,876
Ensembl chr11:83,609,069...83,724,080
JBrowse link
G Pik3c2g phosphatidylinositol-4-phosphate 3-kinase, catalytic subunit type 2 gamma involved_in ISO (PMID:19376974) RGD PMID:19376974 NCBI chr 4:172,483,752...172,851,623
Ensembl chr 4:172,484,345...172,850,544
JBrowse link
G Rab29 RAB29, member RAS oncogene family involved_in ISO (PMID:19376974) RGD PMID:19376974 NCBI chr13:43,307,757...43,313,420
Ensembl chr13:43,307,775...43,313,417
JBrowse link
G Rab5a RAB5A, member RAS oncogene family involved_in ISO (PMID:19376974) RGD PMID:19376974 NCBI chr 9:6,483,906...6,512,877
Ensembl chr 9:6,484,469...6,512,873
JBrowse link
G Rock2 Rho-associated coiled-coil containing protein kinase 2 involved_in ISO
IEA
(PMID:19376974)
GO_REF:0000107
RGD
Ensembl
PMID:19376974 GO_REF:0000107 NCBI chr 6:39,679,116...39,774,033
Ensembl chr 6:39,679,082...39,774,031
JBrowse link
modulation by host of viral RNA genome replication term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Fbxl2 F-box and leucine-rich repeat protein 2 involved_in ISO (PMID:15893726) RGD PMID:15893726 NCBI chr 8:113,916,660...113,965,137
Ensembl chr 8:113,913,373...113,965,066
JBrowse link
G Fmr1 FMRP translational regulator 1 involved_in ISO
IEA
(PMID:24514761)
GO_REF:0000107
RGD
Ensembl
PMID:24514761 GO_REF:0000107 NCBI chr  X:147,240,239...147,278,057
Ensembl chr  X:147,240,301...147,278,050
JBrowse link
G Phb prohibitin involved_in ISO (MGI:6436975|PMID:29324904) RGD PMID:29324904 MGI:6436975 NCBI chr10:80,605,268...80,618,043
Ensembl chr10:80,605,251...80,618,042
JBrowse link
G Vapb VAMP associated protein B and C involved_in ISO (PMID:19515777) RGD PMID:19515777 NCBI chr 3:162,536,090...162,578,738
Ensembl chr 3:162,535,905...162,573,763
JBrowse link
negative regulation of single stranded viral RNA replication via double stranded DNA intermediate term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Aicda activation-induced cytidine deaminase involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 4:155,774,132...155,783,972
Ensembl chr 4:155,774,132...155,783,972
JBrowse link
G Apobec3 apolipoprotein B mRNA editing enzyme catalytic subunit 3 involved_in IBA
ISO
PMID:21873635
(PMID:18779051), (PMID:21835787)
RGD PMID:18779051 PMID:21835787 PMID:21873635 RGD:13792537 NCBI chr 7:111,433,789...111,453,032
Ensembl chr 7:111,433,764...111,452,922
JBrowse link
G Hmga2 high mobility group AT-hook 2 involved_in ISO
ISS
(PMID:17005673)
GO_REF:0000024
RGD
UniProt
PMID:17005673 GO_REF:0000024 NCBI chr 7:55,877,145...55,998,813
Ensembl chr 7:55,880,112...55,994,784
JBrowse link
G Inpp5k inositol polyphosphate-5-phosphatase K involved_in ISO (PMID:18774950) RGD PMID:18774950 NCBI chr10:60,474,262...60,495,813
Ensembl chr10:60,475,897...60,496,773
JBrowse link
G Morc2 MORC family CW-type zinc finger 2 involved_in ISO (PMID:29211708)
(MGI:6271895|PMID:29728365)
RGD PMID:29211708 PMID:29728365 MGI:6271895 NCBI chr14:78,529,603...78,571,375
Ensembl chr14:78,527,009...78,571,343
JBrowse link
G Mphosph8 M-phase phosphoprotein 8 involved_in ISO
ISS
(PMID:29211708)
GO_REF:0000024
RGD
UniProt
PMID:29211708 GO_REF:0000024 NCBI chr15:30,800,546...30,828,415 JBrowse link
G Resf1 retroelement silencing factor 1 involved_in ISO (MGI:6271895|PMID:29728365) RGD PMID:29728365 MGI:6271895 NCBI chr 4:182,325,913...182,362,054
Ensembl chr 4:182,335,454...182,362,054
JBrowse link
G Setdb1 SET domain bifurcated histone lysine methyltransferase 1 involved_in ISO (MGI:5440670|PMID:20164836), (MGI:6271895|PMID:29728365) RGD PMID:20164836 PMID:29728365 MGI:5440670 MGI:6271895 NCBI chr 2:182,898,738...182,930,283
Ensembl chr 2:182,898,738...182,930,506
JBrowse link
G Tasor transcription activation suppressor involved_in ISO (PMID:29211708) RGD PMID:29211708 NCBI chr16:2,606,807...2,669,902
Ensembl chr16:2,603,936...2,667,292
JBrowse link
G Trim28 tripartite motif-containing 28 involved_in
acts_upstream_of_or_within
ISO (MGI:5440670|PMID:20164836)
MGI:2143362 (MGI:3842857|PMID:19270682)
RGD PMID:19270682 PMID:20164836 MGI:3842857 MGI:5440670 NCBI chr 1:73,652,441...73,659,388
Ensembl chr 1:73,652,709...73,659,380
JBrowse link
negative stranded viral RNA replication term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Atg16l1 autophagy related 16-like 1 involved_in
acts_upstream_of_or_within
IBA
ISO
PMID:21873635
(MGI:5552992|PMID:24550300)
RGD PMID:24550300 PMID:21873635 MGI:5552992, RGD:13792537 NCBI chr 9:88,420,737...88,457,530
Ensembl chr 9:88,422,038...88,457,529
JBrowse link
G Atg16l2 autophagy related 16-like 2 involved_in
acts_upstream_of_or_within
IBA
ISO
PMID:21873635
(MGI:5552992|PMID:24550300)
RGD PMID:24550300 PMID:21873635 MGI:5552992, RGD:13792537 NCBI chr 1:155,687,386...155,703,419
Ensembl chr 1:155,684,564...155,703,420
JBrowse link
G Atg5 autophagy related 5 involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
(MGI:5552992|PMID:24550300)
Ensembl
RGD
PMID:24550300 GO_REF:0000107 MGI:5552992 NCBI chr20:47,798,222...47,889,216
Ensembl chr20:47,798,290...47,889,209
JBrowse link
G Atg7 autophagy related 7 acts_upstream_of_or_within ISO (MGI:5552992|PMID:24550300) RGD PMID:24550300 MGI:5552992 NCBI chr 4:147,718,663...147,925,656
Ensembl chr 4:147,718,752...147,925,593
JBrowse link
positive regulation of single stranded viral RNA replication via double stranded DNA intermediate term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Top2a DNA topoisomerase II alpha involved_in IEA
ISO
GO_REF:0000107
(PMID:16712776)
Ensembl
RGD
PMID:16712776 GO_REF:0000107 NCBI chr10:83,946,186...83,975,694
Ensembl chr10:83,945,735...83,976,874
JBrowse link
G Top2b DNA topoisomerase II beta involved_in ISO (PMID:16712776) RGD PMID:16712776 NCBI chr15:9,051,661...9,111,220
Ensembl chr15:9,051,341...9,112,085
JBrowse link
single stranded viral RNA replication via double stranded DNA intermediate term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Smarcb1 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1 acts_upstream_of_or_within ISO (PMID:14963118) RGD PMID:14963118 NCBI chr20:12,741,164...12,763,616
Ensembl chr20:12,741,477...12,763,620
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 19494
    viral process 341
      viral genome replication 122
        viral RNA genome replication 30
          double stranded viral RNA replication 0
          modulation by host of viral RNA genome replication 4
          negative stranded viral RNA replication 4
          positive stranded viral RNA replication 0
          single stranded viral RNA replication via double stranded DNA intermediate + 13
Path 2
Term Annotations click to browse term
  biological_process 19494
    viral process 341
      viral life cycle 258
        viral genome replication 122
          viral RNA genome replication 30
            double stranded viral RNA replication 0
            modulation by host of viral RNA genome replication 4
            negative stranded viral RNA replication 4
            positive stranded viral RNA replication 0
            single stranded viral RNA replication via double stranded DNA intermediate + 13
paths to the root