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ONTOLOGY REPORT - ANNOTATIONS


Term:positive regulation of transcription from RNA polymerase II promoter in response to stress
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Accession:GO:0036003 term browser browse the term
Definition:Any process that increases the frequency, rate or extent of transcription from an RNA polymerase II promoter as a result of a stimulus indicating the organism is under stress. The stress is usually, but not necessarily, exogenous (e.g. temperature, humidity, ionizing radiation).


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positive regulation of transcription from RNA polymerase II promoter in response to stress term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Gcn1 GCN1 activator of EIF2AK4 JBrowse link 12 46,728,684 46,789,696 RGD:1624291
G Klf2 Kruppel-like factor 2 JBrowse link 16 19,223,087 19,225,037 RGD:1624291
G Mapk7 mitogen-activated protein kinase 7 JBrowse link 10 47,768,592 47,775,130 RGD:1624291
G Muc1 mucin 1, cell surface associated JBrowse link 2 188,543,137 188,547,874 RGD:1624291
G Nfe2l1 nuclear factor, erythroid 2-like 1 JBrowse link 10 84,686,762 84,699,313 RGD:1624291
G Nfe2l2 nuclear factor, erythroid 2-like 2 JBrowse link 3 62,497,568 62,525,146 RGD:1624291
G Tp53 tumor protein p53 JBrowse link 10 56,186,299 56,198,449 RGD:1624291
positive regulation of transcription from RNA polymerase II promoter in response to endoplasmic reticulum stress term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Atf3 activating transcription factor 3 JBrowse link 13 109,817,892 109,849,632 RGD:1624291
G Atf4 activating transcription factor 4 JBrowse link 7 121,480,723 121,482,781 RGD:1624291
RGD:13792537
G Atf6 activating transcription factor 6 JBrowse link 13 89,053,457 89,242,531 RGD:1624291
G Atf6b activating transcription factor 6 beta JBrowse link 20 4,414,283 4,422,283 RGD:1624291
G Cebpb CCAAT/enhancer binding protein beta JBrowse link 3 164,424,502 164,425,933 RGD:1624291
G Creb3l1 cAMP responsive element binding protein 3-like 1 JBrowse link 3 80,892,433 80,933,283 RGD:1558627
RGD:1624291
G Creb3l3 cAMP responsive element binding protein 3-like 3 JBrowse link 7 11,490,852 11,499,287 RGD:1624291
G Ddit3 DNA-damage inducible transcript 3 JBrowse link 7 70,578,564 70,585,074 RGD:1599740
RGD:13792537
RGD:1624291
RGD:1600115
G Eif2ak3 eukaryotic translation initiation factor 2 alpha kinase 3 JBrowse link 4 98,648,513 98,709,695 RGD:1624291
G Mbtps2 membrane-bound transcription factor peptidase, site 2 JBrowse link X 40,258,933 40,309,047 RGD:1624291
RGD:13792537
G Tp53 tumor protein p53 JBrowse link 10 56,186,299 56,198,449 RGD:1624291
positive regulation of transcription from RNA polymerase II promoter in response to heat stress term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Hsf1 heat shock transcription factor 1 JBrowse link 7 117,538,523 117,565,478 RGD:1624291
RGD:13792537
G Hsf2 heat shock transcription factor 2 JBrowse link 20 38,935,820 38,963,444 RGD:13792537
G Hsf4 heat shock transcription factor 4 JBrowse link 19 37,225,800 37,232,048 RGD:13792537
G Hsf5 heat shock transcription factor 5 JBrowse link 10 74,909,621 74,954,128 RGD:13792537
G Hsfy2 heat shock transcription factor, Y linked 2 JBrowse link 9 63,289,937 63,291,350 RGD:13792537
positive regulation of transcription from RNA polymerase II promoter in response to hypoxia term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Hif1a hypoxia inducible factor 1 subunit alpha JBrowse link 6 96,810,868 96,856,303 RGD:1600115
RGD:1624291
G Nfe2l2 nuclear factor, erythroid 2-like 2 JBrowse link 3 62,497,568 62,525,146 RGD:1624291
G Notch1 notch receptor 1 JBrowse link 3 3,905,562 3,951,015 RGD:1624291
RGD:1600115
G Rbpj recombination signal binding protein for immunoglobulin kappa J region JBrowse link 14 59,657,738 59,865,427 RGD:1624291
G Tp53 tumor protein p53 JBrowse link 10 56,186,299 56,198,449 RGD:1624291
G Vegfa vascular endothelial growth factor A JBrowse link 9 17,340,341 17,355,681 RGD:1624291
positive regulation of transcription from RNA polymerase II promoter in response to oxidative stress term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Atf4 activating transcription factor 4 JBrowse link 7 121,480,723 121,482,781 RGD:1624291
RGD:13792537
RGD:10047168
G Chd6 chromodomain helicase DNA binding protein 6 JBrowse link 3 156,937,746 157,099,328 RGD:1600115
RGD:1624291
G Mt3 metallothionein 3 JBrowse link 19 11,324,708 11,326,112 RGD:1624291
RGD:1600115
G Nfe2l2 nuclear factor, erythroid 2-like 2 JBrowse link 3 62,497,568 62,525,146 RGD:8655528
G Sesn2 sestrin 2 JBrowse link 5 150,684,891 150,703,846 RGD:1624291

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 19858
    response to stimulus 10526
      response to stress 4032
        cellular response to stress 1987
          regulation of DNA-templated transcription in response to stress 59
            regulation of transcription from RNA polymerase II promoter in response to stress 55
              positive regulation of transcription from RNA polymerase II promoter in response to stress 29
                positive regulation of transcription from RNA polymerase II promoter in response to alkaline pH 0
                positive regulation of transcription from RNA polymerase II promoter in response to amino acid starvation 0
                positive regulation of transcription from RNA polymerase II promoter in response to arsenic-containing substance 0
                positive regulation of transcription from RNA polymerase II promoter in response to cold + 0
                positive regulation of transcription from RNA polymerase II promoter in response to endoplasmic reticulum stress 11
                positive regulation of transcription from RNA polymerase II promoter in response to glucose starvation 0
                positive regulation of transcription from RNA polymerase II promoter in response to heat stress 5
                positive regulation of transcription from RNA polymerase II promoter in response to hydrostatic pressure 0
                positive regulation of transcription from RNA polymerase II promoter in response to hypoxia 6
                positive regulation of transcription from RNA polymerase II promoter in response to iron ion starvation 0
                positive regulation of transcription from RNA polymerase II promoter in response to menadione 0
                positive regulation of transcription from RNA polymerase II promoter in response to nitrosative stress 0
                positive regulation of transcription from RNA polymerase II promoter in response to oxidative stress + 5
Path 2
Term Annotations click to browse term
  biological_process 19858
    metabolic process 12096
      cellular metabolic process 10917
        cellular aromatic compound metabolic process 5567
          nucleobase-containing compound metabolic process 5344
            nucleic acid metabolic process 4850
              RNA metabolic process 4347
                RNA biosynthetic process 3361
                  regulation of RNA biosynthetic process 3237
                    regulation of nucleic acid-templated transcription 3232
                      regulation of transcription, DNA-templated 3182
                        positive regulation of transcription, DNA-templated 1686
                          positive regulation of transcription by RNA polymerase II 1375
                            positive regulation of transcription from RNA polymerase II promoter in response to stress 29
                              positive regulation of transcription from RNA polymerase II promoter in response to alkaline pH 0
                              positive regulation of transcription from RNA polymerase II promoter in response to amino acid starvation 0
                              positive regulation of transcription from RNA polymerase II promoter in response to arsenic-containing substance 0
                              positive regulation of transcription from RNA polymerase II promoter in response to cold + 0
                              positive regulation of transcription from RNA polymerase II promoter in response to endoplasmic reticulum stress 11
                              positive regulation of transcription from RNA polymerase II promoter in response to glucose starvation 0
                              positive regulation of transcription from RNA polymerase II promoter in response to heat stress 5
                              positive regulation of transcription from RNA polymerase II promoter in response to hydrostatic pressure 0
                              positive regulation of transcription from RNA polymerase II promoter in response to hypoxia 6
                              positive regulation of transcription from RNA polymerase II promoter in response to iron ion starvation 0
                              positive regulation of transcription from RNA polymerase II promoter in response to menadione 0
                              positive regulation of transcription from RNA polymerase II promoter in response to nitrosative stress 0
                              positive regulation of transcription from RNA polymerase II promoter in response to oxidative stress + 5
paths to the root

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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.