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ONTOLOGY REPORT - ANNOTATIONS

Term:endodermal cell differentiation
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Accession:GO:0035987 term browser browse the term
Definition:The process in which a relatively unspecialized cell acquires the specialized features of an endoderm cell, a cell of the inner of the three germ layers of the embryo.
Synonyms:exact_synonym: endoderm cell differentiation

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endodermal cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Brd3 bromodomain containing 3 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936669:2,993,284...3,023,185
Ensembl chrNW_004936669:2,993,187...3,021,200 		JBrowse link
G Col11a1 collagen type XI alpha 1 chain involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936730:466,912...680,823
Ensembl chrNW_004936730:468,039...680,753 		JBrowse link
G Col12a1 collagen type XII alpha 1 chain involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936788:533,811...645,821
Ensembl chrNW_004936788:533,802...645,907 		JBrowse link
G Col4a2 collagen type IV alpha 2 chain involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936472:2,270,836...2,416,324
Ensembl chrNW_004936472:2,270,819...2,416,349 		JBrowse link
G Col6a1 collagen type VI alpha 1 chain involved_in ISO (PMID:23154389) UniProt PMID:23154389 NCBI chrNW_004936778:515,600...530,828 JBrowse link
G Col7a1 collagen type VII alpha 1 chain involved_in ISO (PMID:23154389) UniProt PMID:23154389 NCBI chrNW_004936529:348,938...381,701 JBrowse link
G Col8a1 collagen type VIII alpha 1 chain involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936630:3,443,085...3,590,430
Ensembl chrNW_004936630:3,443,068...3,590,516 		JBrowse link
G Fn1 fibronectin 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936586:1,708,803...1,773,372
Ensembl chrNW_004936586:1,708,684...1,773,383 		JBrowse link
G Gata6 GATA binding protein 6 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:9832509) Ensembl
MGI		 PMID:9832509 GO_REF:0000107 NCBI chrNW_004936550:1,814,336...1,844,399
Ensembl chrNW_004936550:1,814,336...1,844,399 		JBrowse link
G Grb2 growth factor receptor bound protein 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:16908534) Ensembl
MGI		 PMID:16908534 GO_REF:0000107 NCBI chrNW_004936594:592,760...661,369
Ensembl chrNW_004936594:592,740...661,369 		JBrowse link
G Hmga2 high mobility group AT-hook 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936545:3,944,419...3,958,289
Ensembl chrNW_004936545:3,944,419...4,064,193 		JBrowse link
G Hsbp1 heat shock factor binding protein 1 acts_upstream_of_or_within ISO (PMID:24380799) MGI PMID:24380799 NCBI chrNW_004936641:3,911,943...3,916,397 JBrowse link
G Inhba inhibin subunit beta A involved_in ISO (PMID:21828274) BHF-UCL PMID:21828274 NCBI chrNW_004936478:16,878,725...16,884,065 JBrowse link
G Itga4 integrin subunit alpha 4 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936509:10,215,283...10,293,653
Ensembl chrNW_004936509:10,215,283...10,292,252 		JBrowse link
G Itga5 integrin subunit alpha 5 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936512:11,588,818...11,612,580
Ensembl chrNW_004936512:11,588,645...11,612,669 		JBrowse link
G Itga7 integrin subunit alpha 7 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936646:160,661...179,454
Ensembl chrNW_004936646:161,332...179,481 		JBrowse link
G Itgav integrin subunit alpha V involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936506:10,750,116...10,839,018
Ensembl chrNW_004936506:10,750,101...10,839,303 		JBrowse link
G Itgb2 integrin subunit beta 2 involved_in ISO (PMID:23154389) UniProt PMID:23154389 NCBI chrNW_004936778:1,286,475...1,311,184
Ensembl chrNW_004936778:1,286,341...1,311,194 		JBrowse link
G Itgb5 integrin subunit beta 5 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936725:417,824...530,993
Ensembl chrNW_004936725:417,433...532,760 		JBrowse link
G Lamb1 laminin subunit beta 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936479:16,177,200...16,245,268
Ensembl chrNW_004936479:16,177,158...16,247,165 		JBrowse link
G Lamb3 laminin subunit beta 3 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936557:3,429,488...3,487,995
Ensembl chrNW_004936557:3,450,247...3,487,954 		JBrowse link
G LOC101971816 laminin subunit alpha-3 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936550:3,121,163...3,357,517
Ensembl chrNW_004936550:3,122,089...3,355,319 		JBrowse link
G Map2k1 mitogen-activated protein kinase kinase 1 involved_in
acts_upstream_of		 IEA
ISO		 (PMID:16908534) Ensembl
MGI		 PMID:16908534 GO_REF:0000107 NCBI chrNW_004936471:26,589,251...26,628,302
Ensembl chrNW_004936471:26,589,161...26,628,302 		JBrowse link
G Mixl1 Mix paired-like homeobox involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936526:2,984,900...2,989,494
Ensembl chrNW_004936526:2,984,907...2,987,893 		JBrowse link
G Mmp14 matrix metallopeptidase 14 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936722:1,447,189...1,457,632
Ensembl chrNW_004936722:1,447,335...1,457,611 		JBrowse link
G Mmp15 matrix metallopeptidase 15 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936475:9,951,876...9,971,631
Ensembl chrNW_004936475:9,951,778...9,971,666 		JBrowse link
G Mmp2 matrix metallopeptidase 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936475:7,801,356...7,825,831
Ensembl chrNW_004936475:7,801,277...7,825,851 		JBrowse link
G Mmp8 matrix metallopeptidase 8 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936551:5,228,950...5,238,948
Ensembl chrNW_004936551:5,228,950...5,238,948 		JBrowse link
G Mmp9 matrix metallopeptidase 9 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936514:7,038,240...7,045,873
Ensembl chrNW_004936514:7,037,639...7,045,793 		JBrowse link
G Myh9 myosin heavy chain 9 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936492:4,384,215...4,466,229
Ensembl chrNW_004936492:4,384,215...4,466,262 		JBrowse link
G Nodal nodal growth differentiation factor involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936521:8,171,146...8,178,802
Ensembl chrNW_004936521:8,171,146...8,178,705 		JBrowse link
G Nr0b1 nuclear receptor subfamily 0 group B member 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:16466956) Ensembl
MGI		 PMID:16466956 GO_REF:0000107 NCBI chrNW_004936553:6,436,371...6,440,141
Ensembl chrNW_004936553:6,436,371...6,440,141 		JBrowse link
G Setd2 SET domain containing 2, histone lysine methyltransferase involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936596:795,940...898,823
Ensembl chrNW_004936596:796,601...883,373 		JBrowse link
G Sox17 SRY-box transcription factor 17 involved_in
acts_upstream_of		 IEA
ISO		 (PMID:17940068) Ensembl
MGI		 PMID:17940068 GO_REF:0000107 NCBI chrNW_004936496:1,248,582...1,251,406
Ensembl chrNW_004936496:1,248,577...1,251,430 		JBrowse link
G Vtn vitronectin involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936538:4,522,275...4,525,245
Ensembl chrNW_004936538:4,522,074...4,525,336 		JBrowse link
endodermal cell fate commitment term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cdc73 cell division cycle 73 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936638:1,365,457...1,482,497
Ensembl chrNW_004936638:1,365,648...1,483,277 		JBrowse link
G Ctnnb1 catenin beta 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:12194849) Ensembl
MGI		 PMID:12194849 GO_REF:0000107 NCBI chrNW_004936473:29,999,542...30,034,610
Ensembl chrNW_004936473:29,999,562...30,038,293 		JBrowse link
G Ctr9 CTR9 homolog, Paf1/RNA polymerase II complex component involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936528:7,585,937...7,613,022
Ensembl chrNW_004936528:7,585,787...7,613,047 		JBrowse link
G Leo1 LEO1 homolog, Paf1/RNA polymerase II complex component involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936471:13,753,061...13,783,990
Ensembl chrNW_004936471:13,753,030...13,784,049 		JBrowse link
G Paf1 PAF1 homolog, Paf1/RNA polymerase II complex component involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936661:2,236,121...2,241,086
Ensembl chrNW_004936661:2,232,484...2,241,629 		JBrowse link
G Pou5f1 POU class 5 homeobox 1 acts_upstream_of_or_within ISO (PMID:10742100) MGI PMID:10742100 NCBI chrNW_004936837:827,568...838,933 JBrowse link
G Rtf1 RTF1 homolog, Paf1/RNA polymerase II complex component involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936471:4,770,060...4,829,562
Ensembl chrNW_004936471:4,770,063...4,829,578 		JBrowse link
endodermal cell fate determination term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gata6 GATA binding protein 6 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:20308546) Ensembl
MGI		 PMID:20308546 GO_REF:0000107 NCBI chrNW_004936550:1,814,336...1,844,399
Ensembl chrNW_004936550:1,814,336...1,844,399 		JBrowse link
G Sox17 SRY-box transcription factor 17 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:20308546) Ensembl
MGI		 PMID:20308546 GO_REF:0000107 NCBI chrNW_004936496:1,248,582...1,251,406
Ensembl chrNW_004936496:1,248,577...1,251,430 		JBrowse link
endodermal cell fate specification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Eomes eomesodermin involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:21245162) Ensembl
MGI
TreeGrafter		 PMID:21245162 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936473:18,825,969...18,833,179
Ensembl chrNW_004936473:18,825,942...18,833,179 		JBrowse link
G Hnf1b HNF1 homeobox B involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:18635606) Ensembl
MGI		 PMID:18635606 GO_REF:0000107 NCBI chrNW_004936490:649,551...702,448
Ensembl chrNW_004936490:649,546...702,672 		JBrowse link
G Nanog Nanog homeobox acts_upstream_of_or_within ISO (PMID:20713518) MGI PMID:20713518 NCBI chrNW_004936892:181,834...187,691 JBrowse link
G Pou5f1 POU class 5 homeobox 1 acts_upstream_of_or_within ISO (PMID:20713518) MGI PMID:20713518 NCBI chrNW_004936837:827,568...838,933 JBrowse link
G Sox17 SRY-box transcription factor 17 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936496:1,248,582...1,251,406
Ensembl chrNW_004936496:1,248,577...1,251,430 		JBrowse link
G Sox2 SRY-box transcription factor 2 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:21245162) MGI
Ensembl		 PMID:21245162 GO_REF:0000107 NCBI chrNW_004936566:1,630,698...1,632,607
Ensembl chrNW_004936566:1,631,822...1,632,613 		JBrowse link
negative regulation of endodermal cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Col5a1 collagen type V alpha 1 chain involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936669:2,474,381...2,613,541
Ensembl chrNW_004936669:2,476,818...2,580,891 		JBrowse link
G Col5a2 collagen type V alpha 2 chain involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936506:8,739,475...8,873,073
Ensembl chrNW_004936506:8,822,517...8,870,836 		JBrowse link
negative regulation of endodermal cell fate specification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Mesp1 mesoderm posterior bHLH transcription factor 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936483:15,533,264...15,534,576
Ensembl chrNW_004936483:15,533,522...15,534,576 		JBrowse link
positive regulation of endodermal cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G LOC101971629 core histone macro-H2A.1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936597:2,496,489...2,556,352
Ensembl chrNW_004936597:2,495,862...2,556,603 		JBrowse link
G Map2k1 mitogen-activated protein kinase kinase 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:16908534) Ensembl
MGI		 PMID:16908534 GO_REF:0000107 NCBI chrNW_004936471:26,589,251...26,628,302
Ensembl chrNW_004936471:26,589,161...26,628,302 		JBrowse link
G Sox17 SRY-box transcription factor 17 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:17940068) Ensembl
MGI		 PMID:17940068 GO_REF:0000107 NCBI chrNW_004936496:1,248,582...1,251,406
Ensembl chrNW_004936496:1,248,577...1,251,430 		JBrowse link
regulation of endodermal cell fate specification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dkk1 dickkopf WNT signaling pathway inhibitor 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936787:307,290...309,963
Ensembl chrNW_004936787:306,941...310,166 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 15871
    cellular process 15001
      cellular developmental process 4251
        cell differentiation 4250
          endodermal cell differentiation 51
            endodermal cell fate commitment + 15
            negative regulation of endodermal cell differentiation + 3
            positive regulation of endodermal cell differentiation 3
            regulation of endodermal cell differentiation + 7
Path 2
Term Annotations click to browse term
  biological_process 15871
    developmental process 6321
      anatomical structure development 5953
        multicellular organism development 4829
          embryo development 1278
            embryonic morphogenesis 671
              gastrulation 201
                formation of primary germ layer 134
                  endoderm formation 61
                    endodermal cell differentiation 51
                      endodermal cell fate commitment + 15
                      negative regulation of endodermal cell differentiation + 3
                      positive regulation of endodermal cell differentiation 3
                      regulation of endodermal cell differentiation + 7
paths to the root