ONTOLOGY REPORT - ANNOTATIONS
Term: endodermal cell differentiation
Accession: GO:0035987
browse the term
Definition: The process in which a relatively unspecialized cell acquires the specialized features of an endoderm cell, a cell of the inner of the three germ layers of the embryo.
Synonyms: exact_synonym: endoderm cell differentiation
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BRD3
bromodomain containing 3
involved_in
IEA
Ensembl
GO_REF:0000107
NCBI chr 9:50,290,488...50,322,243
Ensembl chr 9:50,288,240...50,322,127
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CMSS1
cms1 ribosomal small subunit homolog
involved_in
IEA
Ensembl
GO_REF:0000107
NCBI chr33:6,442,721...6,818,394
Ensembl chr33:6,443,035...6,818,171
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COL11A1
collagen type XI alpha 1 chain
involved_in
IEA
Ensembl
GO_REF:0000107
NCBI chr 6:47,425,387...47,622,189
Ensembl chr 6:47,425,307...47,621,012
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COL12A1
collagen type XII alpha 1 chain
involved_in
IEA
Ensembl
GO_REF:0000107
NCBI chr12:36,720,686...36,838,321
Ensembl chr12:36,646,408...36,838,622
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COL4A2
collagen type IV alpha 2 chain
involved_in
IEA
Ensembl
GO_REF:0000107
NCBI chr22:58,656,579...58,820,560
Ensembl chr22:58,697,175...58,773,297
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COL6A1
collagen type VI alpha 1 chain
involved_in
IEA
Ensembl
GO_REF:0000107
NCBI chr31:39,301,718...39,319,895
Ensembl chr31:39,301,748...39,448,062
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COL7A1
collagen type VII alpha 1 chain
involved_in
ISO
(PMID:23154389)
UniProt
PMID:23154389
NCBI chr20:40,519,121...40,550,305
Ensembl chr20:40,519,378...40,552,935
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COL8A1
collagen type VIII alpha 1 chain
involved_in
ISO
(PMID:23154389)
UniProt
PMID:23154389
NCBI chr33:6,285,742...6,428,172
Ensembl chr33:6,285,415...6,425,414
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FN1
fibronectin 1
involved_in
IEA
Ensembl
GO_REF:0000107
NCBI chr37:22,456,854...22,522,410
Ensembl chr37:22,420,428...22,523,123
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GATA6
GATA binding protein 6
acts_upstream_of_or_within involved_in
ISO IEA
(MGI:1315079|PMID:9832509)
MGI Ensembl
PMID:9832509
GO_REF:0000107 MGI:1315079
NCBI chr 7:65,932,114...65,962,574
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GRB2
growth factor receptor bound protein 2
acts_upstream_of_or_within involved_in
ISO IEA
(MGI:3689690|PMID:16908534)
MGI Ensembl
PMID:16908534
GO_REF:0000107 MGI:3689690
NCBI chr 9:5,108,128...5,182,091
Ensembl chr 9:5,117,164...5,180,296
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HMGA2
high mobility group AT-hook 2
involved_in
IEA
Ensembl
GO_REF:0000107
NCBI chr10:8,348,101...8,491,435
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HSBP1
heat shock factor binding protein 1
acts_upstream_of_or_within involved_in
ISO IEA
(MGI:5553204|PMID:24380799)
MGI Ensembl
PMID:24380799
GO_REF:0000107 MGI:5553204
NCBI chr 5:68,474,960...68,479,206
Ensembl chr 5:68,475,948...68,479,145
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INHBA
inhibin subunit beta A
involved_in
IEA
Ensembl
GO_REF:0000107
NCBI chr18:8,272,978...8,288,432
Ensembl chr18:8,272,872...8,283,794
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ITGA4
integrin subunit alpha 4
involved_in
IEA
Ensembl
GO_REF:0000107
NCBI chr36:24,670,464...24,686,719
Ensembl chr36:24,653,408...24,729,057
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ITGA5
integrin subunit alpha 5
involved_in
IEA
Ensembl
GO_REF:0000107
NCBI chr27:904,892...924,757
Ensembl chr27:904,102...924,084
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ITGA7
integrin subunit alpha 7
involved_in
ISO
(PMID:23154389)
UniProt
PMID:23154389
NCBI chr10:91,782...110,839
Ensembl chr10:91,391...110,817
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ITGAV
integrin subunit alpha V
involved_in
IEA
Ensembl
GO_REF:0000107
NCBI chr36:28,815,215...28,890,569
Ensembl chr36:28,804,013...28,887,430
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ITGB2
integrin subunit beta 2
involved_in
ISO
(PMID:23154389)
UniProt
PMID:23154389
NCBI chr31:38,520,733...38,547,003
Ensembl chr31:38,521,103...38,547,018
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ITGB5
integrin subunit beta 5
involved_in
IEA
Ensembl
GO_REF:0000107
NCBI chr33:27,797,204...27,912,558
Ensembl chr33:27,797,667...27,912,584
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LAMA3
laminin subunit alpha 3
involved_in
IEA
Ensembl
GO_REF:0000107
NCBI chr 7:64,405,719...64,654,910
Ensembl chr 7:64,406,082...64,655,268
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LAMB1
laminin subunit beta 1
involved_in
IEA
Ensembl
GO_REF:0000107
NCBI chr18:12,634,640...12,700,311
Ensembl chr18:12,630,554...12,700,308
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LAMB3
laminin subunit beta 3
involved_in
IEA
Ensembl
GO_REF:0000107
NCBI chr 7:8,272,326...8,313,322
Ensembl chr 7:8,272,736...8,310,474
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MAP2K1
mitogen-activated protein kinase kinase 1
acts_upstream_of involved_in
ISO IEA
(MGI:3689690|PMID:16908534)
MGI Ensembl
PMID:16908534
GO_REF:0000107 MGI:3689690
NCBI chr30:30,683,192...30,760,479
Ensembl chr30:30,683,107...30,760,479
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MIXL1
Mix paired-like homeobox
involved_in
ISO
(MGI:5447921|PMID:19038793)
BHF-UCL
PMID:19038793
MGI:5447921
NCBI chr 7:38,651,481...38,652,560
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MMP14
matrix metallopeptidase 14
involved_in
IEA
Ensembl
GO_REF:0000107
NCBI chr 8:3,183,419...3,193,079
Ensembl chr 8:3,183,606...3,194,122
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MMP15
matrix metallopeptidase 15
involved_in
IEA
Ensembl
GO_REF:0000107
NCBI chr 2:58,501,783...58,512,507
Ensembl chr 2:58,504,848...58,512,371
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MMP2
matrix metallopeptidase 2
involved_in
IEA
Ensembl
GO_REF:0000107
NCBI chr 2:60,471,092...60,492,991
Ensembl chr 2:60,471,257...60,494,113
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MMP8
matrix metallopeptidase 8
involved_in
IEA
Ensembl
GO_REF:0000107
NCBI chr 5:29,036,381...29,047,180
Ensembl chr 5:29,035,820...29,046,808
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MMP9
matrix metallopeptidase 9
involved_in
IEA
Ensembl
GO_REF:0000107
NCBI chr24:33,274,260...33,281,116
Ensembl chr24:33,274,268...33,281,293
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MYH9
myosin heavy chain 9
involved_in
IEA
Ensembl
GO_REF:0000107
NCBI chr10:28,063,626...28,122,953
Ensembl chr10:28,063,624...28,122,953
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NODAL
nodal growth differentiation factor
involved_in
ISO
(PMID:21741376)
BHF-UCL
PMID:21741376
NCBI chr 4:21,366,828...21,374,623
Ensembl chr 4:21,367,583...21,375,151
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NR0B1
nuclear receptor subfamily 0 group B member 1
acts_upstream_of_or_within
ISO
(MGI:3640222|PMID:16466956)
MGI
PMID:16466956
MGI:3640222
NCBI chr X:25,396,527...25,401,587
Ensembl chr X:25,396,527...25,401,715
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SEBOX
SEBOX homeobox
involved_in
IEA
Ensembl
GO_REF:0000107
NCBI chr 9:42,614,770...42,616,412
Ensembl chr 9:42,614,941...42,630,864
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SETD2
SET domain containing 2, histone lysine methyltransferase
involved_in
IEA
Ensembl
GO_REF:0000107
NCBI chr20:41,675,539...41,800,697
Ensembl chr20:41,675,599...41,800,612
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SOX17
SRY-box transcription factor 17
acts_upstream_of involved_in
ISO IEA
(MGI:3764939|PMID:17940068)
MGI Ensembl
PMID:17940068
GO_REF:0000107 MGI:3764939
NCBI chr29:5,979,092...5,981,504
Ensembl chr29:5,979,261...5,981,124
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VTN
vitronectin
involved_in
IEA
Ensembl
GO_REF:0000107
NCBI chr 9:42,617,860...42,620,825
Ensembl chr 9:42,614,941...42,630,864
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CDC73
cell division cycle 73
involved_in
ISO
(MGI:3849235|PMID:19345177)
UniProt
PMID:19345177
MGI:3849235
NCBI chr38:5,826,209...5,937,930
Ensembl chr38:5,805,916...5,938,111
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CTNNB1
catenin beta 1
acts_upstream_of_or_within involved_in
ISO IEA
(MGI:3625553|PMID:12194849)
MGI Ensembl
PMID:12194849
GO_REF:0000107 MGI:3625553
NCBI chr23:10,559,722...10,572,933
Ensembl chr23:10,559,718...10,572,927
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CTR9
CTR9 homolog, Paf1/RNA polymerase II complex component
involved_in
IEA
Ensembl
GO_REF:0000107
NCBI chr21:33,915,804...33,949,597
Ensembl chr21:33,915,772...33,949,103
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LEO1
LEO1 homolog, Paf1/RNA polymerase II complex component
involved_in
IEA
Ensembl
GO_REF:0000107
NCBI chr30:17,614,502...17,651,715
Ensembl chr30:17,598,076...17,651,290
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PAF1
PAF1 homolog, Paf1/RNA polymerase II complex component
involved_in
IEA
Ensembl
GO_REF:0000107
NCBI chr 1:113,828,219...113,832,747
Ensembl chr 1:113,828,007...113,832,735
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POU5F1
POU class 5 homeobox 1
acts_upstream_of_or_within
ISO
(MGI:1355046|PMID:10742100)
MGI
PMID:10742100
MGI:1355046
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RTF1
RTF1 homolog, Paf1/RNA polymerase II complex component
involved_in
IEA
Ensembl
GO_REF:0000107
NCBI chr30:8,468,001...8,524,712
Ensembl chr30:8,467,761...8,522,874
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GATA6
GATA binding protein 6
acts_upstream_of_or_within involved_in
ISO IEA
(MGI:4442295|PMID:20308546)
MGI Ensembl
PMID:20308546
GO_REF:0000107 MGI:4442295
NCBI chr 7:65,932,114...65,962,574
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SOX17
SRY-box transcription factor 17
acts_upstream_of_or_within involved_in
ISO IEA
(MGI:4442295|PMID:20308546)
MGI Ensembl
PMID:20308546
GO_REF:0000107 MGI:4442295
NCBI chr29:5,979,092...5,981,504
Ensembl chr29:5,979,261...5,981,124
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EOMES
eomesodermin
acts_upstream_of_or_within involved_in
ISO IEA
(MGI:4887279|PMID:21245162)
MGI TreeGrafter
PMID:21245162
GO_REF:0000118 MGI:4887279
NCBI chr23:16,476,498...16,512,406
Ensembl chr23:16,506,032...16,511,527
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HNF1B
HNF1 homeobox B
acts_upstream_of_or_within involved_in
ISO IEA
(MGI:3807614|PMID:18635606)
MGI Ensembl
PMID:18635606
GO_REF:0000107 MGI:3807614
NCBI chr 9:37,437,992...37,493,200
Ensembl chr 9:37,438,583...37,492,993
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NANOG
Nanog homeobox
acts_upstream_of_or_within
ISO
(PMID:20713518)
MGI
PMID:20713518
NCBI chr27:37,262,558...37,266,449
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POU5F1
POU class 5 homeobox 1
acts_upstream_of_or_within
ISO
(PMID:20713518)
MGI
PMID:20713518
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SOX17
SRY-box transcription factor 17
involved_in
IEA
Ensembl
GO_REF:0000107
NCBI chr29:5,979,092...5,981,504
Ensembl chr29:5,979,261...5,981,124
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SOX2
SRY-box transcription factor 2
acts_upstream_of_or_within
ISO
(PMID:21245162)
MGI
PMID:21245162
NCBI chr34:14,853,000...14,855,153
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COL5A1
collagen type V alpha 1 chain
involved_in
IEA
Ensembl
GO_REF:0000107
NCBI chr 9:50,706,852...50,856,691
Ensembl chr 9:50,770,277...50,854,728
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COL5A2
collagen type V alpha 2 chain
involved_in
ISO
(PMID:23154389)
UniProt
PMID:23154389
NCBI chr36:30,538,863...30,677,450
Ensembl chr36:30,540,229...30,691,564
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MESP1
mesoderm posterior bHLH transcription factor 1
involved_in
IEA
Ensembl
GO_REF:0000107
NCBI chr 3:52,738,333...52,739,962
Ensembl chr 3:52,738,366...52,739,755
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MACROH2A1
macroH2A.1 histone
involved_in
IEA
Ensembl
GO_REF:0000107
NCBI chr11:23,369,957...23,448,235
Ensembl chr11:23,370,300...23,438,219
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MAP2K1
mitogen-activated protein kinase kinase 1
acts_upstream_of_or_within involved_in
ISO IEA
(MGI:3689690|PMID:16908534)
MGI Ensembl
PMID:16908534
GO_REF:0000107 MGI:3689690
NCBI chr30:30,683,192...30,760,479
Ensembl chr30:30,683,107...30,760,479
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SOX17
SRY-box transcription factor 17
acts_upstream_of_or_within involved_in
ISO IEA
(MGI:3764939|PMID:17940068)
MGI Ensembl
PMID:17940068
GO_REF:0000107 MGI:3764939
NCBI chr29:5,979,092...5,981,504
Ensembl chr29:5,979,261...5,981,124
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DKK1
dickkopf WNT signaling pathway inhibitor 1
involved_in
IEA
Ensembl
GO_REF:0000107
NCBI chr26:35,697,428...35,701,596
Ensembl chr26:35,697,618...35,701,496
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