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ONTOLOGY REPORT - ANNOTATIONS


Term:amacrine cell differentiation
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Accession:GO:0035881 term browser browse the term
Definition:The process in which a relatively unspecialized cell acquires specialized features of an amacrine cell, an interneuron generated in the inner nuclear layer (INL) of the vertebrate retina. Amacrine cells integrate, modulate, and interpose a temporal domain in the visual message presented to the retinal ganglion cells, with which they synapse in the inner plexiform layer. Amacrine cells lack large axons.
Synonyms:exact_synonym: amacrine neuron differentiation


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amacrine cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Barhl2 BarH like homeobox 2 involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:14998930) Ensembl
MGI
PMID:14998930 GO_REF:0000107 NCBI chrNW_004936537:8,129,213...8,134,744
Ensembl chrNW_004936537:8,129,207...8,135,237
JBrowse link
G Bhlhe22 basic helix-loop-helix family member e22 acts_upstream_of_or_within ISO (PMID:17092954) MGI PMID:17092954 NCBI chrNW_004936496:9,085,894...9,087,623 JBrowse link
G Foxn4 forkhead box N4 involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:15363391) Ensembl
MGI
PMID:15363391 GO_REF:0000107 NCBI chrNW_004936769:1,061,907...1,081,350
Ensembl chrNW_004936769:1,062,061...1,080,444
JBrowse link
G Gdf11 growth differentiation factor 11 acts_upstream_of
involved_in
ISO
IEA
(PMID:15976303) MGI
Ensembl
PMID:15976303 GO_REF:0000107 NCBI chrNW_004936646:215,101...227,296
Ensembl chrNW_004936646:216,946...224,321
JBrowse link
G Hes1 hes family bHLH transcription factor 1 acts_upstream_of
involved_in
ISO
IEA
(PMID:16038893) MGI
Ensembl
PMID:16038893 GO_REF:0000107 NCBI chrNW_004936711:640,002...642,580
Ensembl chrNW_004936711:639,905...642,622
JBrowse link
G Ikzf1 IKAROS family zinc finger 1 acts_upstream_of_or_within ISO (PMID:25654255) MGI PMID:25654255 NCBI chrNW_004936686:1,459,582...1,556,478
Ensembl chrNW_004936686:1,462,145...1,556,451
JBrowse link
G Neurod1 neuronal differentiation 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936509:10,421,821...10,425,927
Ensembl chrNW_004936509:10,423,126...10,424,196
JBrowse link
G Neurod4 neuronal differentiation 4 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936891:471,576...482,195
Ensembl chrNW_004936891:474,111...482,095
JBrowse link
G Ptf1a pancreas associated transcription factor 1a involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:17301087) Ensembl
MGI
PMID:17301087 GO_REF:0000107 NCBI chrNW_004936520:4,978,896...4,980,648
Ensembl chrNW_004936520:4,978,896...4,980,648
JBrowse link
G Rorb RAR related orphan receptor B involved_in ISO (PMID:23652001) UniProt PMID:23652001 NCBI chrNW_004936503:10,294,530...10,473,070
Ensembl chrNW_004936503:10,295,167...10,470,813
JBrowse link
G Tgif1 TGFB induced factor homeobox 1 acts_upstream_of ISO (PMID:18973577) MGI PMID:18973577 NCBI chrNW_004936672:1,128,104...1,135,844
Ensembl chrNW_004936672:1,128,108...1,136,292
JBrowse link
G Tgif2 TGFB induced factor homeobox 2 involved_in
acts_upstream_of
IEA
ISO
(PMID:18926818) Ensembl
MGI
PMID:18926818 GO_REF:0000107 NCBI chrNW_004936561:4,450,093...4,465,358
Ensembl chrNW_004936561:4,450,026...4,465,341
JBrowse link
negative regulation of amacrine cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Casz1 castor zinc finger 1 acts_upstream_of_or_within ISO (PMID:25654255) MGI PMID:25654255 NCBI chrNW_004936623:4,478,421...4,503,207
Ensembl chrNW_004936623:4,467,837...4,494,390
JBrowse link
G Gdf11 growth differentiation factor 11 involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:15976303) Ensembl
MGI
PMID:15976303 GO_REF:0000107 NCBI chrNW_004936646:215,101...227,296
Ensembl chrNW_004936646:216,946...224,321
JBrowse link
G Hes1 hes family bHLH transcription factor 1 involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:16038893) Ensembl
MGI
PMID:16038893 GO_REF:0000107 NCBI chrNW_004936711:640,002...642,580
Ensembl chrNW_004936711:639,905...642,622
JBrowse link
G Pou4f2 POU class 4 homeobox 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936535:2,705,184...2,711,785
Ensembl chrNW_004936535:2,705,162...2,711,813
JBrowse link
positive regulation of amacrine cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dlx1 distal-less homeobox 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936509:2,248,181...2,250,991
Ensembl chrNW_004936509:2,248,181...2,250,991
JBrowse link
G Dlx2 distal-less homeobox 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936509:2,262,873...2,265,391
Ensembl chrNW_004936509:2,262,873...2,265,391
JBrowse link
G Tgif1 TGFB induced factor homeobox 1 acts_upstream_of_or_within ISO (PMID:18973577) MGI PMID:18973577 NCBI chrNW_004936672:1,128,104...1,135,844
Ensembl chrNW_004936672:1,128,108...1,136,292
JBrowse link
G Tgif2 TGFB induced factor homeobox 2 involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:18926818) Ensembl
MGI
PMID:18926818 GO_REF:0000107 NCBI chrNW_004936561:4,450,093...4,465,358
Ensembl chrNW_004936561:4,450,026...4,465,341
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 17435
    developmental process 6454
      anatomical structure development 6066
        neural retina development 101
          amacrine cell differentiation 16
            negative regulation of amacrine cell differentiation 4
            positive regulation of amacrine cell differentiation 4
            regulation of amacrine cell differentiation + 8
Path 2
Term Annotations click to browse term
  biological_process 17435
    developmental process 6454
      anatomical structure development 6066
        multicellular organism development 4907
          system development 4271
            sensory system development 475
              visual system development 469
                eye development 466
                  camera-type eye development 420
                    retina development in camera-type eye 221
                      neural retina development 101
                        amacrine cell differentiation 16
                          negative regulation of amacrine cell differentiation 4
                          positive regulation of amacrine cell differentiation 4
                          regulation of amacrine cell differentiation + 8
paths to the root