Send us a Message



Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   

ONTOLOGY REPORT - ANNOTATIONS


Term:amacrine cell differentiation
go back to main search page
Accession:GO:0035881 term browser browse the term
Definition:The process in which a relatively unspecialized cell acquires specialized features of an amacrine cell, an interneuron generated in the inner nuclear layer (INL) of the vertebrate retina. Amacrine cells integrate, modulate, and interpose a temporal domain in the visual message presented to the retinal ganglion cells, with which they synapse in the inner plexiform layer. Amacrine cells lack large axons.
Synonyms:exact_synonym: amacrine neuron differentiation



show annotations for term's descendants           Sort by:
amacrine cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G BARHL2 BarH like homeobox 2 involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:14998930) Ensembl
MGI
PMID:14998930 GO_REF:0000107 NCBI chr 1:93,373,317...93,378,667
Ensembl chr 1:92,121,017...92,126,036
JBrowse link
G BHLHE22 basic helix-loop-helix family member e22 acts_upstream_of_or_within ISO (PMID:17092954) MGI PMID:17092954 NCBI chr 8:61,119,561...61,122,827 JBrowse link
G FOXN4 forkhead box N4 involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:15363391) Ensembl
MGI
PMID:15363391 GO_REF:0000107 NCBI chr12:106,855,308...106,886,508
Ensembl chr12:110,251,449...110,280,025
JBrowse link
G GDF11 growth differentiation factor 11 involved_in
acts_upstream_of
IEA
ISO
(PMID:15976303) Ensembl
MGI
PMID:15976303 GO_REF:0000107 NCBI chr12:33,154,530...33,168,427
Ensembl chr12:33,879,180...33,893,252
JBrowse link
G HES1 hes family bHLH transcription factor 1 involved_in
acts_upstream_of
IEA
ISO
(PMID:16038893) Ensembl
MGI
PMID:16038893 GO_REF:0000107 NCBI chr 3:191,432,513...191,435,387
Ensembl chr 3:201,749,044...201,754,257
JBrowse link
G IKZF1 IKAROS family zinc finger 1 acts_upstream_of_or_within ISO (PMID:25654255) MGI PMID:25654255 NCBI chr 7:50,946,817...51,047,168
Ensembl chr 7:51,191,685...51,291,245
JBrowse link
G NEUROD1 neuronal differentiation 1 involved_in ISO (PMID:11861467) UniProt PMID:11861467 NCBI chr2B:68,939,341...68,943,516 JBrowse link
G NEUROD4 neuronal differentiation 4 involved_in ISO (PMID:11861467) UniProt PMID:11861467 NCBI chr12:33,719,986...33,730,012 JBrowse link
G PTF1A pancreas associated transcription factor 1a acts_upstream_of_or_within
involved_in
ISO (PMID:17301087)
(PMID:17075007)
MGI
UniProt
PMID:17075007 PMID:17301087 NCBI chr10:23,356,165...23,359,579 JBrowse link
G RORB RAR related orphan receptor B involved_in ISO (PMID:23652001) UniProt PMID:23652001 NCBI chr 9:50,144,836...50,340,910
Ensembl chr 9:73,469,767...73,543,030
JBrowse link
G TGIF1 TGFB induced factor homeobox 1 acts_upstream_of ISO (PMID:18973577) MGI PMID:18973577 NCBI chr18:10,819,015...10,830,282
Ensembl chr18:13,128,359...13,139,145
JBrowse link
G TGIF2 TGFB induced factor homeobox 2 involved_in
acts_upstream_of
IEA
ISO
(PMID:18926818) Ensembl
MGI
PMID:18926818 GO_REF:0000107 NCBI chr20:32,906,641...32,927,119
Ensembl chr20:34,028,415...34,046,354
JBrowse link
negative regulation of amacrine cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CASZ1 castor zinc finger 1 acts_upstream_of_or_within ISO (PMID:25654255) MGI PMID:25654255 NCBI chr 1:9,396,936...9,557,100
Ensembl chr 1:10,622,519...10,677,091
JBrowse link
G GDF11 growth differentiation factor 11 involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:15976303) Ensembl
MGI
PMID:15976303 GO_REF:0000107 NCBI chr12:33,154,530...33,168,427
Ensembl chr12:33,879,180...33,893,252
JBrowse link
G HES1 hes family bHLH transcription factor 1 involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:16038893) Ensembl
MGI
PMID:16038893 GO_REF:0000107 NCBI chr 3:191,432,513...191,435,387
Ensembl chr 3:201,749,044...201,754,257
JBrowse link
G POU4F2 POU class 4 homeobox 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 4:138,969,157...138,972,730
Ensembl chr 4:150,626,392...150,629,961
JBrowse link
positive regulation of amacrine cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G DLX1 distal-less homeobox 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr2B:59,382,156...59,387,100
Ensembl chr2B:176,839,721...176,843,909
JBrowse link
G DLX2 distal-less homeobox 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr2B:59,396,841...59,400,297
Ensembl chr2B:176,853,913...176,857,079
JBrowse link
G TGIF1 TGFB induced factor homeobox 1 acts_upstream_of_or_within ISO (PMID:18973577) MGI PMID:18973577 NCBI chr18:10,819,015...10,830,282
Ensembl chr18:13,128,359...13,139,145
JBrowse link
G TGIF2 TGFB induced factor homeobox 2 involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:18926818) Ensembl
MGI
PMID:18926818 GO_REF:0000107 NCBI chr20:32,906,641...32,927,119
Ensembl chr20:34,028,415...34,046,354
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 19380
    developmental process 6649
      anatomical structure development 6235
        neural retina development 103
          amacrine cell differentiation 16
            negative regulation of amacrine cell differentiation 4
            positive regulation of amacrine cell differentiation 4
            regulation of amacrine cell differentiation + 8
Path 2
Term Annotations click to browse term
  biological_process 19380
    developmental process 6649
      anatomical structure development 6235
        multicellular organism development 5009
          system development 4352
            sensory system development 476
              visual system development 470
                eye development 468
                  camera-type eye development 423
                    retina development in camera-type eye 223
                      neural retina development 103
                        amacrine cell differentiation 16
                          negative regulation of amacrine cell differentiation 4
                          positive regulation of amacrine cell differentiation 4
                          regulation of amacrine cell differentiation + 8
paths to the root