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ONTOLOGY REPORT - ANNOTATIONS


Term:photoreceptor cell outer segment organization
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Accession:GO:0035845 term browser browse the term
Definition:A process that is carried out at the cellular level and results in the assembly, arrangement of constituent parts, or disassembly of the outer segment of a photoreceptor cell, a sensory cell that reacts to the presence of light. The outer segment of the photoreceptor cell contains the light-absorbing materials.
Synonyms:exact_synonym: photoreceptor cell outer segment organisation;   photoreceptor outer segment organization


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photoreceptor cell outer segment organization term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ahi1 Abelson helper integration site 1 ISS
ISO
GO_REF:0000024
MGI:4360696|UniProtKB:Q9QY53 (MGI:4437526|PMID:20081859), (MGI:4461813|PMID:20592197)
UniProt
RGD
PMID:20081859, PMID:20592197 GO_REF:0000024, MGI:4437526, MGI:4461813 NCBI chr 1:16,478,127...16,601,769
Ensembl chr 1:16,478,127...16,601,769
JBrowse link
G Bbs4 Bardet-Biedl syndrome 4 ISO MGI:3055492 (MGI:5467890|PMID:23178122) RGD PMID:23178122 MGI:5467890 NCBI chr 8:64,115,005...64,154,432
Ensembl chr 8:64,121,392...64,154,396
JBrowse link
G Cdhr1 cadherin-related family member 1 ISO (PMID:23044944) RGD PMID:23044944 NCBI chr16:14,328,161...14,348,049
Ensembl chr16:14,328,160...14,348,046
JBrowse link
G Cngb1 cyclic nucleotide gated channel subunit beta 1 ISO MGI:3851598 (MGI:5467890|PMID:23178122) RGD PMID:23178122 MGI:5467890 NCBI chr19:10,142,440...10,206,618
Ensembl chr19:10,142,496...10,206,681
JBrowse link
G Crb1 crumbs cell polarity complex component 1 ISO (MGI:2675211|PMID:12915475) RGD PMID:12915475 MGI:2675211 NCBI chr13:56,270,519...56,462,893
Ensembl chr13:56,270,781...56,462,834
JBrowse link
G Ift140 intraflagellar transport 140 ISO MGI:5311828 (MGI:5604762|PMID:24619649) RGD PMID:24619649 MGI:5604762 NCBI chr10:14,373,668...14,461,509
Ensembl chr10:14,373,679...14,461,160
JBrowse link
G Ift20 intraflagellar transport 20 ISO MGI:3527258|MGI:3817268 (MGI:5317282|PMID:21307337) RGD PMID:21307337 MGI:5317282 NCBI chr10:65,805,808...65,811,353
Ensembl chr10:65,805,860...65,811,351
JBrowse link
G Mfsd2a major facilitator superfamily domain containing 2A ISO (MGI:5789479|PMID:27008858) RGD PMID:27008858 MGI:5789479 NCBI chr 5:140,642,865...140,657,759
Ensembl chr 5:140,642,885...140,657,745
JBrowse link
G Nphp1 nephrocystin 1 ISO UniProtKB:Q8K3E5 (MGI:4437526|PMID:20081859) RGD PMID:20081859 MGI:4437526 NCBI chr 3:120,316,048...120,370,089
Ensembl chr 3:120,316,047...120,373,500
JBrowse link
G Nphp4 nephrocystin 4 ISO MGI:3032515 (MGI:4867588|PMID:21078623) RGD PMID:21078623 MGI:4867588 NCBI chr 5:169,647,581...169,744,662
Ensembl chr 5:169,659,188...169,744,660
JBrowse link
G Pcare photoreceptor cilium actin regulator ISO
IBA
MGI:5751702 (MGI:5636574|PMID:25616964)
PMID:21873635
RGD PMID:25616964, PMID:21873635 MGI:5636574, RGD:13792537 NCBI chr 6:23,337,507...23,346,232
Ensembl chr 6:23,337,571...23,346,173
JBrowse link
G Prph2 peripherin 2 ISO MGI:1856523|MGI:6367794|MGI:97998 (MGI:5905515|PMID:28053051) RGD PMID:28053051 MGI:5905515 NCBI chr 9:16,085,933...16,386,176 JBrowse link
G Rom1 retinal outer segment membrane protein 1 ISO MGI:102791|MGI:2181662 (MGI:5905515|PMID:28053051) RGD PMID:28053051 MGI:5905515 NCBI chr 1:225,126,732...225,128,740
Ensembl chr 1:225,126,734...225,128,740
JBrowse link
G Rp1 RP1, axonemal microtubule associated ISO (MGI:2676521|PMID:14507858) RGD PMID:14507858 MGI:2676521 NCBI chr 5:15,005,028...15,060,508
Ensembl chr 5:15,043,955...15,060,508
JBrowse link
G Tmem67 transmembrane protein 67 IMP RGD PMID:23516626 RGD:11535084 NCBI chr 5:25,666,138...25,721,056
Ensembl chr 5:25,666,137...25,721,072
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 20030
    cellular process 18802
      cellular component organization or biogenesis 6791
        cellular component organization 6536
          photoreceptor cell outer segment organization 15
Path 2
Term Annotations click to browse term
  biological_process 20030
    developmental process 6828
      anatomical structure development 6270
        multicellular organism development 5744
          system development 5280
            nervous system development 2720
              neurogenesis 1936
                generation of neurons 1780
                  neuron differentiation 1614
                    photoreceptor cell differentiation 86
                      photoreceptor cell development 66
                        photoreceptor cell outer segment organization 15
paths to the root

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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.