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ONTOLOGY REPORT - ANNOTATIONS


Term:photoreceptor cell outer segment organization
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Accession:GO:0035845 term browser browse the term
Definition:A process that is carried out at the cellular level and results in the assembly, arrangement of constituent parts, or disassembly of the outer segment of a photoreceptor cell, a sensory cell that reacts to the presence of light. The outer segment of the photoreceptor cell contains the light-absorbing materials.
Synonyms:exact_synonym: photoreceptor cell outer segment organisation;   photoreceptor outer segment organization



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photoreceptor cell outer segment organization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ahi1 Abelson helper integration site 1 involved_in
acts_upstream_of_or_within
ISS
ISO
GO_REF:0000024
UniProtKB:Q9QY53 (MGI:4437526|PMID:20081859)
MGI:4360696 (MGI:4461813|PMID:20592197)
UniProt
RGD
PMID:20081859 PMID:20592197 GO_REF:0000024 MGI:4437526 MGI:4461813 NCBI chr 1:15,768,047...15,886,744
Ensembl chr 1:15,762,462...15,891,041
JBrowse link
G Bbs4 Bardet-Biedl syndrome 4 acts_upstream_of_or_within ISO MGI:3055492 (MGI:5467890|PMID:23178122) RGD PMID:23178122 MGI:5467890 NCBI chr 8:59,731,912...59,765,408
Ensembl chr 8:59,731,912...59,765,607
JBrowse link
G Cdhr1 cadherin-related family member 1 involved_in ISO (PMID:23044944) RGD PMID:23044944 NCBI chr16:12,843,436...12,863,321
Ensembl chr16:12,843,437...12,863,396
JBrowse link
G Cngb1 cyclic nucleotide gated channel subunit beta 1 acts_upstream_of_or_within ISO MGI:3851598 (MGI:5467890|PMID:23178122) RGD PMID:23178122 MGI:5467890 NCBI chr19:9,726,595...9,791,111
Ensembl chr19:9,726,595...9,791,173
JBrowse link
G Crb1 crumbs cell polarity complex component 1 acts_upstream_of_or_within ISO (MGI:2675211|PMID:12915475) RGD PMID:12915475 MGI:2675211 NCBI chr13:50,801,484...50,989,261
Ensembl chr13:50,800,959...50,989,261
JBrowse link
G Ift140 intraflagellar transport 140 acts_upstream_of_or_within ISO MGI:5311828 (MGI:5604762|PMID:24619649) RGD PMID:24619649 MGI:5604762 NCBI chr10:14,032,665...14,121,682
Ensembl chr10:14,032,648...14,120,433
JBrowse link
G Ift20 intraflagellar transport 20 acts_upstream_of_or_within ISO MGI:3527258|MGI:3817268 (MGI:5317282|PMID:21307337) RGD PMID:21307337 MGI:5317282 NCBI chr10:63,432,597...63,438,125
Ensembl chr10:63,432,633...63,438,124
JBrowse link
G Mfsd2a major facilitator superfamily domain containing 2A acts_upstream_of_or_within ISO (MGI:5789479|PMID:27008858) RGD PMID:27008858 MGI:5789479 NCBI chr 5:135,225,801...135,240,744
Ensembl chr 5:135,225,816...135,240,690
JBrowse link
G Nphp1 nephrocystin 1 involved_in ISO UniProtKB:Q8K3E5 (MGI:4437526|PMID:20081859) RGD PMID:20081859 MGI:4437526 NCBI chr 3:114,960,650...115,016,234
Ensembl chr 3:114,960,650...115,016,234
JBrowse link
G Nphp4 nephrocystin 4 acts_upstream_of_or_within ISO MGI:3032515 (MGI:4867588|PMID:21078623) RGD PMID:21078623 MGI:4867588 NCBI chr 5:162,986,157...163,073,708
Ensembl chr 5:162,988,370...163,073,706
JBrowse link
G Pcare photoreceptor cilium actin regulator involved_in
acts_upstream_of_or_within
IBA
ISO
PMID:21873635
MGI:5751702 (MGI:5636574|PMID:25616964)
RGD PMID:25616964 PMID:21873635 MGI:5636574, RGD:13792537 NCBI chr 6:23,749,700...23,758,419
Ensembl chr 6:23,749,757...23,758,169
JBrowse link
G Prph2 peripherin 2 acts_upstream_of_or_within ISO MGI:1856523|MGI:6367794|MGI:97998 (MGI:5905515|PMID:28053051) RGD PMID:28053051 MGI:5905515 NCBI chr 9:14,066,149...14,081,454
Ensembl chr 9:14,066,156...14,081,454
JBrowse link
G Rom1 retinal outer segment membrane protein 1 acts_upstream_of_or_within ISO MGI:102791|MGI:2181662 (MGI:5905515|PMID:28053051) RGD PMID:28053051 MGI:5905515 NCBI chr 1:205,824,050...205,826,058
Ensembl chr 1:205,824,052...205,826,175
JBrowse link
G Rp1 RP1, axonemal microtubule associated involved_in ISO (MGI:2676521|PMID:14507858) RGD PMID:14507858 MGI:2676521 NCBI chr 5:15,121,104...15,582,363
Ensembl chr 5:15,121,133...15,579,363
JBrowse link
G Tmem67 transmembrane protein 67 IMP RGD PMID:23516626 RGD:11535084 NCBI chr 5:25,536,458...25,589,378
Ensembl chr 5:25,536,458...25,589,334
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 19390
    cellular process 18252
      cellular component organization or biogenesis 6492
        cellular component organization 6250
          photoreceptor cell outer segment organization 15
Path 2
Term Annotations click to browse term
  biological_process 19390
    developmental process 6778
      anatomical structure development 6203
        multicellular organism development 5641
          system development 5310
            nervous system development 2733
              neurogenesis 1955
                generation of neurons 1798
                  neuron differentiation 1627
                    photoreceptor cell differentiation 88
                      photoreceptor cell development 68
                        photoreceptor cell outer segment organization 15
paths to the root