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ONTOLOGY REPORT - ANNOTATIONS


Term:platelet-derived growth factor receptor-beta signaling pathway
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Accession:GO:0035791 term browser browse the term
Definition:The series of molecular signals initiated by the binding of a ligand to a beta-type platelet-derived growth factor receptor (PDGFbeta) on the surface of a signal-receiving cell, and ending with the regulation of a downstream cellular process, e.g. transcription.
Synonyms:exact_synonym: PDGF receptor-beta signaling pathway;   PDGFR-beta signaling pathway;   betaPDGF receptor signaling pathway;   platelet-derived growth factor receptor-beta signalling pathway



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platelet-derived growth factor receptor-beta signaling pathway term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ABL1 ABL proto-oncogene 1, non-receptor tyrosine kinase involved_in IEA Ensembl GO_REF:0000107 NCBI chr 1:270,761,641...270,906,708
Ensembl chr 1:270,761,668...270,906,708
JBrowse link
G ALK ALK receptor tyrosine kinase involved_in IEA GOC GO_REF:0000108 NCBI chr 3:109,411,146...110,105,755 JBrowse link
G AXL AXL receptor tyrosine kinase involved_in IEA GOC GO_REF:0000108 NCBI chr 6:49,245,802...49,277,917
Ensembl chr 6:49,245,673...49,277,914
JBrowse link
G CLASP2 cytoplasmic linker associated protein 2 involved_in ISO (PMID:24520051) UniProt PMID:24520051 NCBI chr13:19,305,430...19,510,589
Ensembl chr13:19,305,181...19,510,585
JBrowse link
G CSF1R colony stimulating factor 1 receptor involved_in IEA GOC GO_REF:0000108 NCBI chr 2:151,102,138...151,130,311
Ensembl chr 2:151,102,147...151,147,633
JBrowse link
G DDR1 discoidin domain receptor tyrosine kinase 1 involved_in IEA GOC GO_REF:0000108 NCBI chr 7:23,371,358...23,391,585
Ensembl chr 7:23,373,777...23,391,585
JBrowse link
G DDR2 discoidin domain receptor tyrosine kinase 2 involved_in IEA GOC GO_REF:0000108 NCBI chr 4:87,749,738...87,911,818
Ensembl chr 4:87,756,168...87,911,296
JBrowse link
G EGFR epidermal growth factor receptor involved_in IEA GOC GO_REF:0000108 NCBI chr 9:139,302,410...139,474,632
Ensembl chr 9:139,300,022...139,475,589
JBrowse link
G EPHA1 EPH receptor A1 involved_in IEA GOC GO_REF:0000108 NCBI chr18:6,843,305...6,860,976
Ensembl chr18:6,843,299...6,860,989
JBrowse link
G EPHA2 EPH receptor A2 involved_in IEA GOC GO_REF:0000108 NCBI chr 6:75,251,465...75,279,364
Ensembl chr 6:75,251,467...75,279,314
JBrowse link
G EPHA3 EPH receptor A3 involved_in IEA GOC GO_REF:0000108 NCBI chr13:166,592,492...166,942,791
Ensembl chr13:166,592,493...166,942,767
JBrowse link
G EPHA4 EPH receptor A4 involved_in IEA GOC GO_REF:0000108 NCBI chr15:123,350,867...123,501,872
Ensembl chr15:123,352,816...123,503,126
JBrowse link
G EPHA5 EPH receptor A5 involved_in IEA GOC GO_REF:0000108 NCBI chr 8:63,285,006...63,604,734
Ensembl chr 8:63,287,711...63,604,734
JBrowse link
G EPHA6 EPH receptor A6 involved_in IEA GOC GO_REF:0000108 NCBI chr13:162,568,835...163,445,722
Ensembl chr13:162,569,479...163,443,646
JBrowse link
G EPHA7 EPH receptor A7 involved_in IEA GOC GO_REF:0000108 NCBI chr 1:60,771,567...60,944,092
Ensembl chr 1:60,771,572...60,944,038
JBrowse link
G EPHA8 EPH receptor A8 involved_in IEA GOC GO_REF:0000108 NCBI chr 6:80,516,967...80,548,955
Ensembl chr 6:80,516,967...80,550,588
JBrowse link
G EPHB1 EPH receptor B1 involved_in IEA GOC GO_REF:0000108 NCBI chr13:75,904,678...76,351,540
Ensembl chr13:75,905,676...76,345,534
JBrowse link
G EPHB2 EPH receptor B2 involved_in IEA GOC GO_REF:0000108 NCBI chr 6:80,649,098...80,849,979
Ensembl chr 6:80,650,740...80,843,567
JBrowse link
G EPHB3 EPH receptor B3 involved_in IEA GOC GO_REF:0000108 NCBI chr13:122,467,561...122,488,296
Ensembl chr13:122,467,588...122,488,292
JBrowse link
G EPHB4 EPH receptor B4 involved_in IEA GOC GO_REF:0000108 NCBI chr 3:8,671,052...8,689,778
Ensembl chr 3:8,668,859...8,689,783
JBrowse link
G ERBB2 erb-b2 receptor tyrosine kinase 2 involved_in IEA GOC GO_REF:0000108 NCBI chr12:22,591,621...22,621,384
Ensembl chr12:22,590,725...22,621,351
JBrowse link
G ERBB3 erb-b2 receptor tyrosine kinase 3 involved_in IEA GOC GO_REF:0000108 NCBI chr 5:21,474,218...21,495,040
Ensembl chr 5:21,474,475...21,495,038
JBrowse link
G ERBB3 v-erb-b2 erythroblastic leukemia viral oncogene homolog 3 (avian) involved_in IEA GOC GO_REF:0000108
G ERBB4 erb-b2 receptor tyrosine kinase 4 involved_in IEA GOC GO_REF:0000108 NCBI chr15:113,966,573...115,096,984
Ensembl chr15:113,974,437...115,096,565
JBrowse link
G FGFR1 fibroblast growth factor receptor 1 involved_in IEA GOC GO_REF:0000108 NCBI chr15:48,053,895...48,106,634
Ensembl chr15:48,053,340...48,106,724
JBrowse link
G FGFR2 fibroblast growth factor receptor 2 involved_in IEA GOC GO_REF:0000108 NCBI chr14:131,183,095...131,285,001
Ensembl chr14:131,181,713...131,289,425
JBrowse link
G FGFR3 fibroblast growth factor receptor 3 involved_in IEA GOC GO_REF:0000108 NCBI chr 8:879,151...894,968
Ensembl chr 8:879,159...894,964
JBrowse link
G FGFR4 fibroblast growth factor receptor 4 involved_in IEA GOC GO_REF:0000108 NCBI chr 2:80,841,536...80,853,791
Ensembl chr 2:80,841,536...80,853,796
JBrowse link
G FLT1 fms related receptor tyrosine kinase 1 involved_in IEA GOC GO_REF:0000108 NCBI chr11:5,620,698...5,797,095
Ensembl chr11:5,621,212...5,795,264
JBrowse link
G FLT3 fms related receptor tyrosine kinase 3 involved_in IEA GOC GO_REF:0000108 NCBI chr11:5,370,475...5,455,439
Ensembl chr11:5,370,496...5,455,358
JBrowse link
G FLT4 fms related receptor tyrosine kinase 4 involved_in IEA GOC GO_REF:0000108 NCBI chr 2:78,076,008...78,115,137
Ensembl chr 2:78,076,080...78,115,126
JBrowse link
G IGF1R insulin like growth factor 1 receptor involved_in IEA GOC GO_REF:0000108 NCBI chr 1:137,383,623...137,691,038
Ensembl chr 1:137,387,825...137,691,058
JBrowse link
G INSR insulin receptor involved_in IEA GOC GO_REF:0000108 NCBI chr 2:71,797,209...71,939,923
Ensembl chr 2:71,797,204...71,936,104
JBrowse link
G INSRR insulin receptor related receptor involved_in IEA GOC GO_REF:0000108 NCBI chr 4:93,239,678...93,258,075
Ensembl chr 4:93,239,969...93,258,075
JBrowse link
G KDR kinase insert domain receptor involved_in IEA GOC GO_REF:0000108 NCBI chr 8:41,809,116...41,856,379
Ensembl chr 8:41,809,122...41,856,336
JBrowse link
G KIT KIT proto-oncogene, receptor tyrosine kinase involved_in IEA GOC GO_REF:0000108 NCBI chr 8:41,402,334...41,492,306
Ensembl chr 8:41,402,043...41,493,734
JBrowse link
G LOX lysyl oxidase acts_upstream_of_or_within
involved_in
ISO
IBA
IEA
PMID:18586678
(PMID:18586678)
MGI
GO_Central
Ensembl
PMID:18586678 GO_REF:0000033 GO_REF:0000107 RGD:14390060 NCBI chr 2:125,595,115...125,607,026
Ensembl chr 2:125,591,789...125,607,594
JBrowse link
G MERTK MER proto-oncogene, tyrosine kinase involved_in IEA GOC GO_REF:0000108 NCBI chr 3:44,349,377...44,483,400
Ensembl chr 3:44,349,385...44,483,402
JBrowse link
G MET MET proto-oncogene, receptor tyrosine kinase involved_in IEA GOC GO_REF:0000108 NCBI chr18:29,426,044...29,541,526
Ensembl chr18:29,426,048...29,541,512
JBrowse link
G MST1R macrophage stimulating 1 receptor involved_in IEA GOC GO_REF:0000108 NCBI chr13:32,401,623...32,423,614
Ensembl chr13:32,409,555...32,421,920
JBrowse link
G MUSK muscle associated receptor tyrosine kinase involved_in IEA GOC GO_REF:0000108 NCBI chr 1:251,650,151...251,758,538
Ensembl chr 1:251,650,710...251,756,608
JBrowse link
G NTRK1 neurotrophic receptor tyrosine kinase 1 involved_in IEA GOC GO_REF:0000108 NCBI chr 4:93,219,509...93,237,944
Ensembl chr 4:93,219,516...93,255,981
JBrowse link
G NTRK2 neurotrophic receptor tyrosine kinase 2 involved_in IEA GOC GO_REF:0000108 NCBI chr10:30,030,050...30,429,938
Ensembl chr10:30,033,405...30,429,882
JBrowse link
G NTRK3 neurotrophic receptor tyrosine kinase 3 involved_in IEA GOC GO_REF:0000108 NCBI chr 1:191,535,262...191,941,675
Ensembl chr 1:191,535,301...191,925,327
JBrowse link
G PDGFRA platelet derived growth factor receptor alpha involved_in IEA GOC GO_REF:0000108 NCBI chr 8:40,966,568...41,021,440
Ensembl chr 8:40,967,493...41,021,441
JBrowse link
G PDGFRB platelet derived growth factor receptor beta involved_in IEA GOC
Ensembl
GO_REF:0000107 GO_REF:0000108 NCBI chr 2:151,155,753...151,192,818
Ensembl chr 2:151,155,756...151,192,647
JBrowse link
G PTPN1 protein tyrosine phosphatase non-receptor type 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr17:52,017,100...52,086,747
Ensembl chr17:52,017,130...52,086,736
JBrowse link
G RET ret proto-oncogene involved_in IEA GOC GO_REF:0000108 NCBI chr14:61,305,818...61,361,416
Ensembl chr14:61,305,841...61,361,412
JBrowse link
G ROS1 ROS proto-oncogene 1, receptor tyrosine kinase involved_in IEA GOC GO_REF:0000108 NCBI chr 1:44,409,877...44,535,784
Ensembl chr 1:44,410,351...44,534,874
JBrowse link
G TEK TEK receptor tyrosine kinase involved_in IEA GOC GO_REF:0000108 NCBI chr 1:195,938,177...196,052,294
Ensembl chr 1:195,937,432...196,051,980
JBrowse link
G TIE1 tyrosine kinase with immunoglobulin like and EGF like domains 1 involved_in IEA GOC GO_REF:0000108 NCBI chr 6:167,919,662...167,947,253
Ensembl chr 6:167,919,668...167,940,870
JBrowse link
G TYRO3 TYRO3 protein tyrosine kinase involved_in IEA GOC GO_REF:0000108 NCBI chr 1:129,811,540...129,829,395
Ensembl chr 1:129,811,544...129,829,014
JBrowse link
negative regulation of platelet-derived growth factor receptor-beta signaling pathway term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G GLRX glutaredoxin ISO RGD PMID:16893901 RGD:9686048 NCBI chr 2:102,425,580...102,437,851
Ensembl chr 2:102,425,580...102,437,858
JBrowse link
G LRP1 LDL receptor related protein 1 involved_in ISO (PMID:19742316) BHF-UCL PMID:19742316 NCBI chr 5:22,435,636...22,519,276 JBrowse link
G MYOCD myocardin involved_in IEA Ensembl GO_REF:0000107 NCBI chr12:56,931,628...57,029,258
Ensembl chr12:56,931,317...57,029,258
JBrowse link
G PTPN2 protein tyrosine phosphatase non-receptor type 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 6:96,769,862...96,847,136
Ensembl chr 6:96,770,253...96,847,125
JBrowse link
positive regulation of metanephric mesenchymal cell migration by platelet-derived growth factor receptor-beta signaling pathway term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G PDGFA platelet derived growth factor subunit A involved_in IEA Ensembl GO_REF:0000107 NCBI chr 3:296,399...322,967
Ensembl chr 3:301,584...321,712
JBrowse link
G PDGFB platelet derived growth factor subunit B involved_in IEA Ensembl GO_REF:0000107 Ensembl chr 5:8,986,462...9,007,435 JBrowse link
G PDGFRB platelet derived growth factor receptor beta involved_in ISO (PMID:19019919) UniProt PMID:19019919 NCBI chr 2:151,155,753...151,192,818
Ensembl chr 2:151,155,756...151,192,647
JBrowse link
positive regulation of platelet-derived growth factor receptor-beta signaling pathway term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G HIP1 huntingtin interacting protein 1 involved_in IEA
IBA
Ensembl
GO_Central
GO_REF:0000033 GO_REF:0000107 NCBI chr 3:10,416,418...10,578,374
Ensembl chr 3:10,416,475...10,578,366
JBrowse link
G HIP1R huntingtin interacting protein 1 related involved_in IEA
IBA
Ensembl
GO_Central
GO_REF:0000033 GO_REF:0000107 NCBI chr14:29,996,388...30,024,343
Ensembl chr14:29,993,655...30,024,216
JBrowse link
G SRC SRC proto-oncogene, non-receptor tyrosine kinase involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:23651497) Ensembl
MGI
PMID:23651497 GO_REF:0000107 NCBI chr17:40,470,970...40,524,862
Ensembl chr17:40,471,009...40,524,860
JBrowse link
regulation of platelet-derived growth factor receptor-beta signaling pathway term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G LOX lysyl oxidase involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:21665949) Ensembl
MGI
PMID:21665949 GO_REF:0000107 NCBI chr 2:125,595,115...125,607,026
Ensembl chr 2:125,591,789...125,607,594
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 18930
    cellular process 18472
      signal transduction 6991
        cell surface receptor signaling pathway 2785
          enzyme-linked receptor protein signaling pathway 1039
            cell surface receptor protein tyrosine kinase signaling pathway 661
              platelet-derived growth factor receptor signaling pathway 114
                platelet-derived growth factor receptor-beta signaling pathway 61
                  VEGF-activated platelet-derived growth factor receptor-beta signaling pathway 0
                  negative regulation of platelet-derived growth factor receptor-beta signaling pathway 4
                  positive regulation of platelet-derived growth factor receptor-beta signaling pathway 3
                  regulation of metanephric mesenchymal cell migration by platelet-derived growth factor receptor-beta signaling pathway + 3
                  regulation of platelet-derived growth factor receptor-beta signaling pathway + 8
Path 2
Term Annotations click to browse term
  biological_process 18930
    biological regulation 13012
      regulation of biological process 12630
        signaling 7533
          signal transduction 6991
            cell surface receptor signaling pathway 2785
              enzyme-linked receptor protein signaling pathway 1039
                cell surface receptor protein tyrosine kinase signaling pathway 661
                  platelet-derived growth factor receptor signaling pathway 114
                    platelet-derived growth factor receptor-beta signaling pathway 61
                      VEGF-activated platelet-derived growth factor receptor-beta signaling pathway 0
                      negative regulation of platelet-derived growth factor receptor-beta signaling pathway 4
                      positive regulation of platelet-derived growth factor receptor-beta signaling pathway 3
                      regulation of metanephric mesenchymal cell migration by platelet-derived growth factor receptor-beta signaling pathway + 3
                      regulation of platelet-derived growth factor receptor-beta signaling pathway + 8
paths to the root