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ONTOLOGY REPORT - ANNOTATIONS


Term:platelet-derived growth factor receptor-beta signaling pathway
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Accession:GO:0035791 term browser browse the term
Definition:The series of molecular signals initiated by the binding of a ligand to a beta-type platelet-derived growth factor receptor (PDGFbeta) on the surface of a signal-receiving cell, and ending with the regulation of a downstream cellular process, e.g. transcription.
Synonyms:exact_synonym: PDGF receptor-beta signaling pathway;   PDGFR-beta signaling pathway;   betaPDGF receptor signaling pathway;   platelet-derived growth factor receptor-beta signalling pathway


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platelet-derived growth factor receptor-beta signaling pathway term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ABL1 ABL proto-oncogene 1, non-receptor tyrosine kinase involved_in IEA Ensembl GO_REF:0000107 NCBI chr12:7,258,932...7,435,658
Ensembl chr12:7,256,648...7,312,734
JBrowse link
G ALK ALK receptor tyrosine kinase involved_in IEA GOC GO_REF:0000108 Ensembl chr14:78,200,889...78,406,094 JBrowse link
G AXL AXL receptor tyrosine kinase involved_in IEA GOC GO_REF:0000108 NCBI chr 6:35,537,718...35,580,143
Ensembl chr 6:35,537,773...35,580,716
JBrowse link
G CLASP2 cytoplasmic linker associated protein 2 involved_in ISO (PMID:24520051) UniProt PMID:24520051 NCBI chr15:77,969,587...78,186,843
Ensembl chr15:77,968,860...78,186,601
JBrowse link
G CSF1R colony stimulating factor 1 receptor involved_in IEA GOC GO_REF:0000108 NCBI chr23:52,663,290...52,723,652
Ensembl chr23:52,664,076...52,697,304
JBrowse link
G DDR1 discoidin domain receptor tyrosine kinase 1 involved_in IEA GOC GO_REF:0000108 NCBI chr17:41,564,271...41,583,404
Ensembl chr17:41,564,992...41,575,682
JBrowse link
G DDR2 discoidin domain receptor tyrosine kinase 2 involved_in IEA GOC GO_REF:0000108 NCBI chr20:1,298,636...1,451,872
Ensembl chr20:1,299,574...1,359,674
JBrowse link
G EGFR epidermal growth factor receptor involved_in IEA GOC GO_REF:0000108 NCBI chr21:3,664,622...3,853,492
Ensembl chr21:3,666,339...3,853,239
JBrowse link
G EPHA1 EPH receptor A1 involved_in IEA GOC GO_REF:0000108 NCBI chr21:112,276,941...112,294,505
Ensembl chr21:112,277,427...112,294,424
JBrowse link
G EPHA2 EPH receptor A2 involved_in IEA GOC GO_REF:0000108 NCBI chr20:116,147,077...116,178,647
Ensembl chr20:116,147,040...116,178,644
JBrowse link
G EPHA3 EPH receptor A3 involved_in IEA GOC GO_REF:0000108 NCBI chr22:87,480,220...87,840,628
Ensembl chr22:87,480,126...87,838,512
JBrowse link
G EPHA4 EPH receptor A4 involved_in IEA GOC GO_REF:0000108 NCBI chr10:107,344,442...107,501,375
Ensembl chr10:107,352,530...107,499,788
JBrowse link
G EPHA5 EPH receptor A5 involved_in IEA GOC GO_REF:0000108 NCBI chr 7:3,219,396...3,564,416
Ensembl chr 7:3,219,449...3,559,854
JBrowse link
G EPHA7 EPH receptor A7 involved_in IEA GOC GO_REF:0000108 NCBI chr13:18,097,051...18,283,664
Ensembl chr13:18,099,005...18,281,415
JBrowse link
G EPHA8 EPH receptor A8 involved_in IEA GOC GO_REF:0000108 NCBI chr20:110,061,871...110,095,354
Ensembl chr20:110,063,727...110,101,072
JBrowse link
G EPHB1 EPH receptor B1 involved_in IEA GOC GO_REF:0000108 NCBI chr15:55,144,178...55,592,252
Ensembl chr15:55,143,630...55,589,862
JBrowse link
G EPHB2 EPH receptor B2 involved_in IEA GOC GO_REF:0000108 NCBI chr20:109,747,883...109,954,936
Ensembl chr20:109,746,925...109,890,777
JBrowse link
G EPHB3 EPH receptor B3 involved_in IEA GOC GO_REF:0000108 NCBI chr15:4,831,980...4,852,586
Ensembl chr15:4,832,750...4,852,152
JBrowse link
G EPHB4 EPH receptor B4 involved_in IEA GOC GO_REF:0000108 NCBI chr28:12,389,884...12,416,746
Ensembl chr28:12,389,942...12,416,920
JBrowse link
G ERBB2 erb-b2 receptor tyrosine kinase 2 involved_in IEA GOC GO_REF:0000108 NCBI chr16:66,435,488...66,464,993
Ensembl chr16:66,434,251...66,464,952
JBrowse link
G ERBB3 erb-b2 receptor tyrosine kinase 3 involved_in IEA GOC GO_REF:0000108 NCBI chr11:52,020,912...52,043,809
Ensembl chr11:52,021,058...52,044,028
JBrowse link
G FGFR1 fibroblast growth factor receptor 1 involved_in IEA GOC GO_REF:0000108 NCBI chr 8:36,426,116...36,485,683
Ensembl chr 8:36,427,110...36,485,508
JBrowse link
G FGFR2 fibroblast growth factor receptor 2 involved_in IEA GOC GO_REF:0000108 NCBI chr 9:114,234,344...114,354,736
Ensembl chr 9:114,234,250...114,354,704
JBrowse link
G FGFR3 fibroblast growth factor receptor 3 involved_in IEA GOC GO_REF:0000108 NCBI chr27:46,958,444...46,974,032
Ensembl chr27:46,957,254...46,973,392
JBrowse link
G FGFR4 fibroblast growth factor receptor 4 involved_in IEA GOC GO_REF:0000108 NCBI chr23:79,095,031...79,106,018
Ensembl chr23:79,097,429...79,105,456
JBrowse link
G FLT1 fms related receptor tyrosine kinase 1 involved_in IEA GOC GO_REF:0000108 NCBI chr 3:7,412,506...7,608,122
Ensembl chr 3:7,412,172...7,607,967
JBrowse link
G FLT3 fms related receptor tyrosine kinase 3 involved_in IEA GOC GO_REF:0000108 NCBI chr 3:7,117,579...7,222,600
Ensembl chr 3:7,116,947...7,222,849
JBrowse link
G FLT4 fms related receptor tyrosine kinase 4 involved_in IEA GOC GO_REF:0000108 NCBI chr23:82,328,257...82,373,785
Ensembl chr23:82,328,258...82,357,044
JBrowse link
G IGF1R insulin like growth factor 1 receptor involved_in IEA GOC GO_REF:0000108 NCBI chr29:17,212,206...17,534,036
Ensembl chr29:17,459,404...17,526,930
JBrowse link
G INSR insulin receptor involved_in IEA GOC GO_REF:0000108 NCBI chr 6:6,625,951...6,803,610
Ensembl chr 6:6,630,777...6,803,592
JBrowse link
G INSRR insulin receptor related receptor involved_in IEA GOC GO_REF:0000108 NCBI chr20:7,008,882...7,029,377
Ensembl chr20:7,010,504...7,028,557
JBrowse link
G KDR kinase insert domain receptor involved_in IEA GOC GO_REF:0000108 NCBI chr 7:13,435,059...13,482,236
Ensembl chr 7:13,435,096...13,482,771
JBrowse link
G KIT KIT proto-oncogene, receptor tyrosine kinase involved_in IEA GOC GO_REF:0000108 NCBI chr 7:13,808,104...13,891,003
Ensembl chr 7:13,808,037...13,890,976
JBrowse link
G LOX lysyl oxidase acts_upstream_of_or_within
involved_in
ISO
IEA
PMID:18586678
(PMID:18586678)
MGI
Ensembl
PMID:18586678 GO_REF:0000107 RGD:14390060 NCBI chr23:25,158,458...25,172,763
Ensembl chr23:25,157,269...25,172,757
JBrowse link
G LTK leukocyte receptor tyrosine kinase involved_in IEA GOC GO_REF:0000108 NCBI chr26:41,489,867...41,502,314
Ensembl chr26:41,490,902...41,501,956
JBrowse link
G MERTK MER proto-oncogene, tyrosine kinase involved_in IEA GOC GO_REF:0000108 NCBI chr14:14,971,858...15,100,736
Ensembl chr14:15,001,471...15,101,025
JBrowse link
G MET MET proto-oncogene, receptor tyrosine kinase involved_in IEA GOC GO_REF:0000108 NCBI chr21:85,370,574...85,486,405
Ensembl chr21:85,397,645...85,488,093
JBrowse link
G MST1R macrophage stimulating 1 receptor involved_in IEA GOC GO_REF:0000108 NCBI chr22:11,293,637...11,310,239
Ensembl chr22:11,293,263...11,309,980
JBrowse link
G NTRK1 neurotrophic receptor tyrosine kinase 1 involved_in IEA GOC GO_REF:0000108 NCBI chr20:6,987,903...7,027,381
Ensembl chr20:6,987,905...7,008,670
JBrowse link
G NTRK3 neurotrophic receptor tyrosine kinase 3 involved_in IEA GOC GO_REF:0000108 NCBI chr29:6,441,824...6,831,029
Ensembl chr29:6,447,256...6,830,526
JBrowse link
G PDGFRA platelet derived growth factor receptor alpha involved_in IEA GOC GO_REF:0000108 NCBI chr 7:14,243,291...14,307,373
Ensembl chr 7:14,241,070...14,307,422
JBrowse link
G PDGFRB platelet derived growth factor receptor beta involved_in IEA Ensembl GO_REF:0000107 NCBI chr23:52,724,061...52,766,264
Ensembl chr23:52,724,005...52,766,234
JBrowse link
G PTPN1 protein tyrosine phosphatase non-receptor type 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 2:13,385,681...13,459,180
Ensembl chr 2:13,387,727...13,459,105
JBrowse link
G RET ret proto-oncogene involved_in IEA GOC GO_REF:0000108 NCBI chr 9:38,746,088...38,798,773
Ensembl chr 9:38,769,170...38,796,712
JBrowse link
G ROS1 ROS proto-oncogene 1, receptor tyrosine kinase involved_in IEA GOC GO_REF:0000108 NCBI chr13:56,412,451...56,561,382
Ensembl chr13:56,413,298...56,562,503
JBrowse link
G TIE1 tyrosine kinase with immunoglobulin like and EGF like domains 1 involved_in IEA GOC GO_REF:0000108 NCBI chr20:89,483,089...89,505,716
Ensembl chr20:89,483,039...89,505,246
JBrowse link
G TYRO3 TYRO3 protein tyrosine kinase involved_in IEA GOC GO_REF:0000108 NCBI chr26:41,429,667...41,449,130
Ensembl chr26:41,429,556...41,449,175
JBrowse link
negative regulation of platelet-derived growth factor receptor-beta signaling pathway term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G GLRX glutaredoxin ISO RGD PMID:16893901 RGD:9686048 NCBI chr 4:89,687,354...89,696,236
Ensembl chr 4:89,685,984...89,696,231
JBrowse link
G LRP1 LDL receptor related protein 1 involved_in ISO (PMID:19742316) BHF-UCL PMID:19742316 NCBI chr11:53,039,147...53,125,041
Ensembl chr11:53,039,364...53,125,776
JBrowse link
G MYOCD myocardin involved_in IEA Ensembl GO_REF:0000107 NCBI chr16:11,923,464...12,100,897
Ensembl chr16:12,000,197...12,095,552
JBrowse link
G PTPN2 protein tyrosine phosphatase non-receptor type 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr18:71,302,082...71,400,201
Ensembl chr18:71,310,577...71,345,960
JBrowse link
positive regulation of metanephric mesenchymal cell migration by platelet-derived growth factor receptor-beta signaling pathway term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G PDGFA platelet derived growth factor subunit A involved_in IEA Ensembl GO_REF:0000107 NCBI chr28:21,044,549...21,068,411
Ensembl chr28:21,047,219...21,069,827
JBrowse link
G PDGFB platelet derived growth factor subunit B involved_in IEA Ensembl GO_REF:0000107 NCBI chr19:21,865,792...21,888,068
Ensembl chr19:21,863,768...21,886,395
JBrowse link
G PDGFRB platelet derived growth factor receptor beta involved_in ISO (PMID:19019919) UniProt PMID:19019919 NCBI chr23:52,724,061...52,766,264
Ensembl chr23:52,724,005...52,766,234
JBrowse link
positive regulation of platelet-derived growth factor receptor-beta signaling pathway term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G HIP1 huntingtin interacting protein 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr28:9,805,985...10,007,931
Ensembl chr28:9,807,672...9,914,047
JBrowse link
G HIP1R huntingtin interacting protein 1 related involved_in IEA Ensembl GO_REF:0000107 NCBI chr11:118,173,302...118,202,840
Ensembl chr11:118,173,544...118,202,985
JBrowse link
G SRC SRC proto-oncogene, non-receptor tyrosine kinase involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:23651497) Ensembl
MGI
PMID:23651497 GO_REF:0000107 NCBI chr 2:26,344,480...26,367,448
Ensembl chr 2:26,343,450...26,367,776
JBrowse link
regulation of platelet-derived growth factor receptor-beta signaling pathway term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G LOX lysyl oxidase acts_upstream_of_or_within
involved_in
ISO
IEA
(PMID:21665949) MGI
Ensembl
PMID:21665949 GO_REF:0000107 NCBI chr23:25,158,458...25,172,763
Ensembl chr23:25,157,269...25,172,757
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 19801
    cellular process 19323
      signal transduction 5636
        cell surface receptor signaling pathway 2764
          enzyme-linked receptor protein signaling pathway 985
            cell surface receptor protein tyrosine kinase signaling pathway 635
              platelet-derived growth factor receptor signaling pathway 108
                platelet-derived growth factor receptor-beta signaling pathway 56
                  VEGF-activated platelet-derived growth factor receptor-beta signaling pathway 0
                  negative regulation of platelet-derived growth factor receptor-beta signaling pathway 4
                  positive regulation of platelet-derived growth factor receptor-beta signaling pathway 3
                  regulation of metanephric mesenchymal cell migration by platelet-derived growth factor receptor-beta signaling pathway + 3
                  regulation of platelet-derived growth factor receptor-beta signaling pathway + 8
Path 2
Term Annotations click to browse term
  biological_process 19801
    biological regulation 12151
      regulation of biological process 11755
        signaling 6158
          signal transduction 5636
            cell surface receptor signaling pathway 2764
              enzyme-linked receptor protein signaling pathway 985
                cell surface receptor protein tyrosine kinase signaling pathway 635
                  platelet-derived growth factor receptor signaling pathway 108
                    platelet-derived growth factor receptor-beta signaling pathway 56
                      VEGF-activated platelet-derived growth factor receptor-beta signaling pathway 0
                      negative regulation of platelet-derived growth factor receptor-beta signaling pathway 4
                      positive regulation of platelet-derived growth factor receptor-beta signaling pathway 3
                      regulation of metanephric mesenchymal cell migration by platelet-derived growth factor receptor-beta signaling pathway + 3
                      regulation of platelet-derived growth factor receptor-beta signaling pathway + 8
paths to the root