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ONTOLOGY REPORT - ANNOTATIONS


Term:intraciliary retrograde transport
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Accession:GO:0035721 term browser browse the term
Definition:The directed movement of large protein complexes along microtubules from the tip of a cilium (also called flagellum) toward the cell body, mediated by motor proteins.
Comment:Note that we deem cilium and microtubule-based flagellum to be equivalent.
Synonyms:exact_synonym: intraflagellar retrograde transport



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intraciliary retrograde transport term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cilk1 ciliogenesis associated kinase 1 involved_in ISS
IEA
ISO
GO_REF:0000024
GO_REF:0000107
(MGI:5787768|PMID:25243405)
UniProt
Ensembl
RGD
PMID:25243405 GO_REF:0000024 GO_REF:0000107 MGI:5787768 NCBI chr 8:78,984,075...79,042,695
Ensembl chr 8:78,984,258...79,042,691
JBrowse link
G Dync2h1 dynein cytoplasmic 2 heavy chain 1 involved_in
acts_upstream_of_or_within
IBA
ISO
PMID:21873635
MGI:4359237 (MGI:3804352|PMID:18488998)
RGD PMID:18488998 PMID:21873635 MGI:3804352, RGD:13792537 NCBI chr 8:4,189,257...4,412,183
Ensembl chr 8:4,189,257...4,412,183
JBrowse link
G Dync2i1 dynein 2 intermediate chain 1 involved_in ISO (PMID:29742051), (PMID:30649997) RGD PMID:29742051 PMID:30649997 NCBI chr 6:137,133,418...137,189,937
Ensembl chr 6:137,133,418...137,188,719
JBrowse link
G Dync2i2 dynein 2 intermediate chain 2 involved_in ISO (PMID:29742051), (PMID:30649997)
(MGI:5906938|PMID:28379358)
RGD PMID:28379358 PMID:29742051 PMID:30649997 MGI:5906938 NCBI chr 3:13,306,039...13,322,121
Ensembl chr 3:13,306,039...13,322,121
JBrowse link
G Dync2li1 dynein cytoplasmic 2 light intermediate chain 1 involved_in IBA
IEA
PMID:21873635
GO_REF:0000002
InterPro PMID:21873635 GO_REF:0000002, RGD:13792537 NCBI chr 6:9,992,537...10,025,403
Ensembl chr 6:9,992,541...10,025,336
JBrowse link
G Dynll1 dynein light chain LC8-type 1 acts_upstream_of_or_within
involved_in
ISO
IBA
MGI:4368846 (MGI:5615046|PMID:25294941)
PMID:21873635
RGD PMID:25294941 PMID:21873635 MGI:5615046, RGD:13792537 NCBI chr12:41,312,367...41,314,742
Ensembl chr12:41,312,367...41,314,741
JBrowse link
G Dynlt2b dynein light chain Tctex-type 2B involved_in ISO (PMID:29742051) RGD PMID:29742051 NCBI chr11:68,359,138...68,367,573
Ensembl chr11:68,358,263...68,367,499
JBrowse link
G Ift122 intraflagellar transport 122 involved_in IBA
ISO
PMID:21873635
(MGI:4888042|PMID:21209331)
RGD PMID:21209331 PMID:21873635 MGI:4888042, RGD:13792537 NCBI chr 4:148,905,031...148,975,458
Ensembl chr 4:148,905,046...148,975,458
JBrowse link
G Ift140 intraflagellar transport 140 involved_in
acts_upstream_of_or_within
ISO
IBA
(PMID:22503633)
MGI:4458412 (MGI:5635784|PMID:24009529)
PMID:21873635
RGD PMID:22503633 PMID:24009529 PMID:21873635 MGI:5635784, RGD:13792537 NCBI chr10:14,032,665...14,121,682
Ensembl chr10:14,032,648...14,120,433
JBrowse link
G Ift43 intraflagellar transport 43 involved_in ISO
IBA
(PMID:21378380)
PMID:21873635
RGD PMID:21378380 PMID:21873635 RGD:13792537 NCBI chr 6:105,729,734...105,806,257
Ensembl chr 6:105,729,792...105,806,257
JBrowse link
G LOC100363141 dynein light chain 1-like involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 8:80,321,783...80,322,046
Ensembl chr 8:80,321,777...80,322,094
Ensembl chr 8:80,321,777...80,322,094
JBrowse link
G LOC679822 similar to dynein, cytoplasmic, light peptide involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr10:1,492,902...1,493,171
Ensembl chr10:1,492,893...1,493,171
JBrowse link
G Ttc21a tetratricopeptide repeat domain 21A involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 8:119,667,044...119,702,028
Ensembl chr 8:119,666,933...119,702,456
JBrowse link
G Ttc21b tetratricopeptide repeat domain 21B involved_in
acts_upstream_of_or_within
IBA
ISO
PMID:21873635
MGI:2152544|MGI:2669525|MGI:5587034 (MGI:3784018|PMID:18327258), (MGI:4367927|PMID:19732765), (MGI:5789453|PMID:27482817)
RGD PMID:18327258 PMID:19732765 PMID:27482817 PMID:21873635 MGI:3784018 MGI:4367927 MGI:5789453, RGD:13792537 NCBI chr 3:50,861,367...50,935,782
Ensembl chr 3:50,861,367...50,935,903
JBrowse link
G Wdr19 WD repeat domain 19 acts_upstream_of_or_within
involved_in
ISO
IBA
(PMID:20889716)
PMID:21873635
RGD PMID:20889716 PMID:21873635 RGD:13792537 NCBI chr14:43,042,474...43,106,337
Ensembl chr14:43,042,478...43,106,288
JBrowse link
G Wdr35 WD repeat domain 35 involved_in
acts_upstream_of_or_within
IBA
IEA
ISO
PMID:21873635
GO_REF:0000104
(PMID:20889716)
UniProt
RGD
PMID:20889716 PMID:21873635 GO_REF:0000104, RGD:13792537 NCBI chr 6:31,771,315...31,831,450
Ensembl chr 6:31,771,360...31,831,029
JBrowse link
regulation of intraciliary retrograde transport term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dynlt2b dynein light chain Tctex-type 2B involved_in ISO (PMID:26044572) RGD PMID:26044572 NCBI chr11:68,359,138...68,367,573
Ensembl chr11:68,358,263...68,367,499
JBrowse link
G Ttc21b tetratricopeptide repeat domain 21B involved_in ISO (PMID:27932497) RGD PMID:27932497 NCBI chr 3:50,861,367...50,935,782
Ensembl chr 3:50,861,367...50,935,903
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 20099
    localization 5650
      protein-containing complex localization 233
        intraciliary transport 46
          intraciliary retrograde transport 16
            negative regulation of intraciliary retrograde transport 0
            positive regulation of intraciliary retrograde transport 0
            regulation of intraciliary retrograde transport + 2
Path 2
Term Annotations click to browse term
  biological_process 20099
    cellular process 18695
      cellular localization 3595
        establishment of localization in cell 2294
          intracellular transport 1618
            cytoskeleton-dependent intracellular transport 205
              transport along microtubule 173
                intraciliary transport 46
                  intraciliary retrograde transport 16
                    negative regulation of intraciliary retrograde transport 0
                    positive regulation of intraciliary retrograde transport 0
                    regulation of intraciliary retrograde transport + 2
paths to the root