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ONTOLOGY REPORT - ANNOTATIONS


Term:SNARE complex assembly
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Accession:GO:0035493 term browser browse the term
Definition:The aggregation, arrangement and bonding together of a set of components to form a SNARE complex, a protein complex involved in membrane fusion; a stable ternary complex consisting of a four-helix bundle, usually formed from one R-SNARE and three Q-SNAREs with an ionic layer sandwiched between hydrophobic layers.



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SNARE complex assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cltrn collectrin, amino acid transport regulator involved_in ISO (PMID:16330323) RGD PMID:16330323 NCBI chr  X:30,361,967...30,395,264
Ensembl chr  X:30,361,967...30,395,349
JBrowse link
G Snap25 synaptosome associated protein 25 involved_in IMP PMID:9671503
PMID:12680753
CAFA PMID:9671503 PMID:12680753 RGD:12793053, RGD:12793015 NCBI chr 3:124,041,898...124,123,761
Ensembl chr 3:124,041,898...124,123,760
JBrowse link
G Snca synuclein alpha involved_in ISO (PMID:20798282)
(MGI:5608839|PMID:25246573)
RGD PMID:20798282 PMID:25246573 MGI:5608839 NCBI chr 4:89,696,420...89,797,240
Ensembl chr 4:89,696,420...89,796,262
JBrowse link
G Stx1a syntaxin 1A involved_in IMP PMID:9671503
PMID:12680753
CAFA PMID:9671503 PMID:12680753 RGD:12793053, RGD:12793015 NCBI chr12:21,641,971...21,670,022
Ensembl chr12:21,641,969...21,669,930
JBrowse link
G Stx4 syntaxin 4 involved_in IEA
ISO
GO_REF:0000107
(MGI:5567905|PMID:21151919)
Ensembl
RGD
PMID:21151919 GO_REF:0000107 MGI:5567905 NCBI chr 1:182,451,108...182,459,701
Ensembl chr 1:182,451,117...182,459,979
JBrowse link
G Stxbp1 syntaxin binding protein 1 involved_in ISO (PMID:23091057) RGD PMID:23091057 NCBI chr 3:16,076,725...16,138,431
Ensembl chr 3:16,076,391...16,138,369
JBrowse link
G Stxbp6 syntaxin binding protein 6 acts_upstream_of ISS
ISO
GO_REF:0000024
(PMID:12145319)
ParkinsonsUK-UCL
RGD
PMID:12145319 GO_REF:0000024 NCBI chr 6:61,920,756...62,157,405
Ensembl chr 6:61,920,756...62,158,024
JBrowse link
G Uvrag UV radiation resistance associated involved_in
acts_upstream_of_or_within
IBA
ISO
PMID:21873635
(MGI:5552992|PMID:24550300)
RGD PMID:24550300 PMID:21873635 MGI:5552992, RGD:13792537 NCBI chr 1:153,185,356...153,442,200
Ensembl chr 1:153,185,395...153,442,136
JBrowse link
G Vamp1 vesicle-associated membrane protein 1 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 4:158,012,634...158,019,350
Ensembl chr 4:158,012,663...158,019,349
JBrowse link
G Vamp2 vesicle-associated membrane protein 2 involved_in IMP
IBA
PMID:9671503
PMID:21873635
PMID:12680753
CAFA
GO_Central
PMID:9671503 PMID:21873635 PMID:12680753 RGD:12793053, RGD:13792537, RGD:12793015 NCBI chr10:53,793,581...53,797,815
Ensembl chr10:53,793,923...53,797,809
JBrowse link
G Vamp3 vesicle-associated membrane protein 3 involved_in IBA
ISO
PMID:21873635
(MGI:5567905|PMID:21151919)
RGD PMID:21151919 PMID:21873635 MGI:5567905, RGD:13792537 NCBI chr 5:161,498,109...161,508,704
Ensembl chr 5:161,498,109...161,508,751
JBrowse link
G Vamp4 vesicle-associated membrane protein 4 involved_in ISO
IBA
(PMID:21151919)
PMID:21873635
RGD PMID:21151919 PMID:21873635 RGD:13792537 NCBI chr13:74,919,872...74,942,791
Ensembl chr13:74,919,880...74,933,686
JBrowse link
G Vamp7 vesicle-associated membrane protein 7 involved_in ISO (MGI:5567905|PMID:21151919) RGD PMID:21151919 MGI:5567905 NCBI chr12:16,728,477...16,764,261
Ensembl chr12:16,728,524...16,764,097
JBrowse link
G Vamp8 vesicle-associated membrane protein 8 involved_in IBA
ISO
PMID:21873635
(MGI:5567905|PMID:21151919)
RGD PMID:21151919 PMID:21873635 MGI:5567905, RGD:13792537 NCBI chr 4:104,442,383...104,452,884
Ensembl chr 4:104,442,393...104,452,897
JBrowse link
negative regulation of SNARE complex assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ankrd27 ankyrin repeat domain 27 involved_in ISO (PMID:24856514) RGD PMID:24856514 NCBI chr 1:88,251,216...88,303,615
Ensembl chr 1:88,251,226...88,303,615
JBrowse link
G Prrt2 proline-rich transmembrane protein 2 involved_in ISS
ISO
GO_REF:0000024
(MGI:6114881|PMID:29056747)
UniProt
RGD
PMID:29056747 GO_REF:0000024 MGI:6114881 NCBI chr 1:181,625,243...181,628,905
Ensembl chr 1:181,604,545...181,628,850
JBrowse link
G Stxbp1 syntaxin binding protein 1 involved_in TAS PMID:12093152 ParkinsonsUK-UCL PMID:12093152 RGD:730238 NCBI chr 3:16,076,725...16,138,431
Ensembl chr 3:16,076,391...16,138,369
JBrowse link
G Trim9 tripartite motif-containing 9 IDA RGD PMID:11524423 RGD:631246 NCBI chr 6:88,756,824...88,856,588
Ensembl chr 6:88,757,303...88,856,542
JBrowse link
positive regulation of SNARE complex assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Snca synuclein alpha involved_in ISO (PMID:20798282) RGD PMID:20798282 NCBI chr 4:89,696,420...89,797,240
Ensembl chr 4:89,696,420...89,796,262
JBrowse link
regulation of SNARE complex assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Septin8 septin 8 involved_in IDA PMID:19196426 UniProt PMID:19196426 RGD:13702278 NCBI chr10:37,684,639...37,713,704
Ensembl chr10:37,684,639...37,713,174
JBrowse link
G Stxbp6 syntaxin binding protein 6 involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 6:61,920,756...62,157,405
Ensembl chr 6:61,920,756...62,158,024
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 19497
    cellular process 18359
      vesicle-mediated transport 1677
        vesicle fusion 110
          SNARE complex assembly 18
            negative regulation of SNARE complex assembly 4
            positive regulation of SNARE complex assembly 1
            regulation of SNARE complex assembly + 7
Path 2
Term Annotations click to browse term
  biological_process 19497
    cellular process 18359
      cellular component organization or biogenesis 6620
        cellular component organization 6378
          organelle organization 3888
            organelle fusion 156
              organelle membrane fusion 114
                vesicle fusion 110
                  SNARE complex assembly 18
                    negative regulation of SNARE complex assembly 4
                    positive regulation of SNARE complex assembly 1
                    regulation of SNARE complex assembly + 7
paths to the root