Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models   new Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources

ONTOLOGY REPORT - ANNOTATIONS

Term:SNARE complex assembly
go back to main search page
Accession:GO:0035493 term browser browse the term
Definition:The aggregation, arrangement and bonding together of a set of components to form a SNARE complex, a protein complex involved in membrane fusion; a stable ternary complex consisting of a four-helix bundle, usually formed from one R-SNARE and three Q-SNAREs with an ionic layer sandwiched between hydrophobic layers.


show annotations for term's descendants           Sort by:
SNARE complex assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cltrn collectrin, amino acid transport regulator involved_in ISO
IEA		 (PMID:16330323)
GO_REF:0000107		 RGD
Ensembl		 PMID:16330323 GO_REF:0000107 NCBI chr  X:30,361,967...30,395,264
Ensembl chr  X:30,361,967...30,395,349 		JBrowse link
G Snap25 synaptosome associated protein 25 involved_in IMP PMID:9671503
PMID:12680753		 CAFA PMID:9671503 PMID:12680753 RGD:12793053, RGD:12793015 NCBI chr 3:124,041,898...124,123,761
Ensembl chr 3:124,041,898...124,123,760 		JBrowse link
G Snca synuclein alpha involved_in ISO
IEA		 (PMID:20798282)
GO_REF:0000107
(MGI:5608839|PMID:25246573)		 RGD
Ensembl		 PMID:20798282 PMID:25246573 GO_REF:0000107 MGI:5608839 NCBI chr 4:89,696,420...89,797,240
Ensembl chr 4:89,696,420...89,796,262 		JBrowse link
G Stx1a syntaxin 1A involved_in IMP PMID:9671503
PMID:12680753		 CAFA PMID:9671503 PMID:12680753 RGD:12793053, RGD:12793015 NCBI chr12:21,641,971...21,670,022
Ensembl chr12:21,641,969...21,669,930 		JBrowse link
G Stx4 syntaxin 4 involved_in ISO (MGI:5567905|PMID:21151919) RGD PMID:21151919 MGI:5567905 NCBI chr 1:182,451,108...182,459,701
Ensembl chr 1:182,451,117...182,459,979 		JBrowse link
G Stxbp1 syntaxin binding protein 1 involved_in ISO (PMID:23091057) RGD PMID:23091057 NCBI chr 3:16,076,725...16,138,431
Ensembl chr 3:16,076,391...16,138,369 		JBrowse link
G Stxbp6 syntaxin binding protein 6 acts_upstream_of ISS
ISO		 GO_REF:0000024
(PMID:12145319)		 ParkinsonsUK-UCL
RGD		 PMID:12145319 GO_REF:0000024 NCBI chr 6:61,920,756...62,157,405
Ensembl chr 6:61,920,756...62,158,024 		JBrowse link
G Uvrag UV radiation resistance associated involved_in
acts_upstream_of_or_within		 IBA
ISO		 GO_REF:0000033
(PMID:24550300)		 GO_Central
RGD		 PMID:24550300 GO_REF:0000033 NCBI chr 1:153,185,356...153,442,200
Ensembl chr 1:153,185,395...153,442,136 		JBrowse link
G Vamp1 vesicle-associated membrane protein 1 involved_in ISO
IBA
IEA		 (MGI:5567905|PMID:21151919)
GO_REF:0000033
GO_REF:0000118		 RGD
GO_Central
TreeGrafter		 PMID:21151919 GO_REF:0000033 GO_REF:0000118 MGI:5567905 NCBI chr 4:158,012,634...158,019,350
Ensembl chr 4:158,012,663...158,019,349 		JBrowse link
G Vamp2 vesicle-associated membrane protein 2 involved_in IMP
IBA
IEA		 PMID:9671503
GO_REF:0000033
GO_REF:0000118
PMID:12680753		 GO_Central
TreeGrafter		 PMID:9671503 PMID:12680753 GO_REF:0000033 GO_REF:0000118, RGD:12793053, RGD:12793015 NCBI chr10:53,793,581...53,797,815
Ensembl chr10:53,793,923...53,797,809 		JBrowse link
G Vamp3 vesicle-associated membrane protein 3 involved_in ISO
IBA
IEA		 (MGI:5567905|PMID:21151919)
GO_REF:0000033
GO_REF:0000118		 RGD
GO_Central
TreeGrafter		 PMID:21151919 GO_REF:0000033 GO_REF:0000118 MGI:5567905 NCBI chr 5:161,498,109...161,508,704
Ensembl chr 5:161,498,109...161,508,751 		JBrowse link
G Vamp4 vesicle-associated membrane protein 4 involved_in ISO
IBA		 (PMID:21151919)
GO_REF:0000033		 RGD
GO_Central		 PMID:21151919 GO_REF:0000033 NCBI chr13:74,919,872...74,942,791
Ensembl chr13:74,919,880...74,933,686 		JBrowse link
G Vamp7 vesicle-associated membrane protein 7 involved_in ISO (MGI:5567905|PMID:21151919) RGD PMID:21151919 MGI:5567905 NCBI chr12:16,728,486...16,764,261
Ensembl chr12:16,728,524...16,764,097 		JBrowse link
G Vamp8 vesicle-associated membrane protein 8 involved_in ISO
IEA
IBA		 (MGI:5567905|PMID:21151919)
GO_REF:0000118
GO_REF:0000033		 RGD
TreeGrafter
GO_Central		 PMID:21151919 GO_REF:0000033 GO_REF:0000118 MGI:5567905 NCBI chr 4:104,442,383...104,452,884
Ensembl chr 4:104,442,393...104,452,897 		JBrowse link
negative regulation of SNARE complex assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ankrd27 ankyrin repeat domain 27 involved_in ISO (PMID:24856514) RGD PMID:24856514 NCBI chr 1:88,251,216...88,303,615
Ensembl chr 1:88,251,226...88,303,615 		JBrowse link
G Prrt2 proline-rich transmembrane protein 2 involved_in ISS
ISO
IEA		 GO_REF:0000024
(MGI:6114881|PMID:29056747)
GO_REF:0000107		 UniProt
RGD
Ensembl		 PMID:29056747 GO_REF:0000024 GO_REF:0000107 MGI:6114881 NCBI chr 1:181,625,243...181,628,833
Ensembl chr 1:181,604,545...181,628,850 		JBrowse link
G Stxbp1 syntaxin binding protein 1 involved_in TAS PMID:12093152 ParkinsonsUK-UCL PMID:12093152 RGD:730238 NCBI chr 3:16,076,725...16,138,431
Ensembl chr 3:16,076,391...16,138,369 		JBrowse link
G Trim9 tripartite motif-containing 9 IDA RGD PMID:11524423 RGD:631246 NCBI chr 6:88,756,824...88,856,588
Ensembl chr 6:88,757,303...88,856,542 		JBrowse link
positive regulation of SNARE complex assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Snca synuclein alpha involved_in ISO
IEA		 (PMID:20798282)
GO_REF:0000107		 RGD
Ensembl		 PMID:20798282 GO_REF:0000107 NCBI chr 4:89,696,420...89,797,240
Ensembl chr 4:89,696,420...89,796,262 		JBrowse link
regulation of SNARE complex assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Septin8 septin 8 involved_in IDA PMID:19196426 UniProt PMID:19196426 RGD:13702278 NCBI chr10:37,684,649...37,713,704
Ensembl chr10:37,684,639...37,713,174 		JBrowse link
G Stxbp6 syntaxin binding protein 6 involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 6:61,920,756...62,157,405
Ensembl chr 6:61,920,756...62,158,024 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 20413
    cellular process 18812
      vesicle-mediated transport 1691
        vesicle fusion 128
          SNARE complex assembly 18
            negative regulation of SNARE complex assembly 4
            positive regulation of SNARE complex assembly 1
            regulation of SNARE complex assembly + 7
Path 2
Term Annotations click to browse term
  biological_process 20413
    cellular process 18812
      cellular component organization or biogenesis 7290
        cellular component organization 6980
          organelle organization 3887
            organelle fusion 181
              organelle membrane fusion 130
                vesicle fusion 128
                  SNARE complex assembly 18
                    negative regulation of SNARE complex assembly 4
                    positive regulation of SNARE complex assembly 1
                    regulation of SNARE complex assembly + 7
paths to the root