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ONTOLOGY REPORT - ANNOTATIONS

Term:segmentation
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Accession:GO:0035282 term browser browse the term
Definition:The regionalization process that divides an organism or part of an organism into a series of semi-repetitive parts, or segments, often arranged along a longitudinal axis.
Synonyms:xref: Wikipedia:Segmentation_(biology)

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show annotations for term's descendants           Sort by:
segmentation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Acd ACD shelterin complex subunit and telomerase recruitment factor acts_upstream_of_or_within ISO (PMID:15537664) MGI PMID:15537664 NCBI chrNW_004624746:18,688,898...18,692,216
Ensembl chrNW_004624746:18,689,364...18,695,944 		JBrowse link
G Dvl2 dishevelled segment polarity protein 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624786:9,843,580...9,851,538
Ensembl chrNW_004624786:9,844,157...9,851,301 		JBrowse link
G Psen1 presenilin 1 acts_upstream_of_or_within ISO (PMID:16079160)
(PMID:11262239)		 MGI PMID:11262239 PMID:16079160 NCBI chrNW_004624734:28,200,358...28,272,684
Ensembl chrNW_004624734:28,200,140...28,272,743 		JBrowse link
anterior/posterior axis specification, embryo term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cripto cripto, EGF-CFC family member acts_upstream_of_or_within ISO (PMID:9790191) MGI PMID:9790191 NCBI chrNW_004624730:74,547,226...74,550,526 JBrowse link
G Frs2 fibroblast growth factor receptor substrate 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:15870281) Ensembl
MGI		 PMID:15870281 GO_REF:0000107 NCBI chrNW_004624750:28,224,289...28,359,473 JBrowse link
G Fzd5 frizzled class receptor 5 involved_in ISO (PMID:9054360) BHF-UCL PMID:9054360 NCBI chrNW_004624765:8,222,193...8,228,530
Ensembl chrNW_004624765:8,222,237...8,228,050 		JBrowse link
G Tasor transcription activation suppressor involved_in ISO (MGI:6109647|PMID:28839193) UniProt PMID:28839193 MGI:6109647 NCBI chrNW_004624822:577,840...626,126
Ensembl chrNW_004624822:565,559...624,710 		JBrowse link
G Tbx3 T-box transcription factor 3 involved_in ISO (PMID:9207801) UniProt PMID:9207801 NCBI chrNW_004624747:18,128,003...18,142,366
Ensembl chrNW_004624747:18,128,028...18,142,451 		JBrowse link
G Tcf7l1 transcription factor 7 like 1 acts_upstream_of_or_within ISO (PMID:14668413) MGI PMID:14668413 NCBI chrNW_004624749:17,804,630...17,956,504
Ensembl chrNW_004624749:17,803,772...17,829,805 		JBrowse link
G Wnt5a Wnt family member 5A involved_in ISO (MGI:4835157|PMID:9054360) BHF-UCL PMID:9054360 MGI:4835157 NCBI chrNW_004624822:1,824,378...1,843,599
Ensembl chrNW_004624822:1,825,238...1,841,288 		JBrowse link
axis elongation involved in somitogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Lrp6 LDL receptor related protein 6 acts_upstream_of_or_within ISO (PMID:11029008) MGI PMID:11029008 NCBI chrNW_004624752:25,605,444...25,756,573
Ensembl chrNW_004624752:25,605,302...25,751,893 		JBrowse link
G Med12 mediator complex subunit 12 acts_upstream_of_or_within ISO (PMID:20630950) MGI PMID:20630950 NCBI chrNW_004624903:1,412,346...1,436,474
Ensembl chrNW_004624903:1,412,474...1,436,474 		JBrowse link
G Wnt3a Wnt family member 3A acts_upstream_of_or_within ISO (PMID:11029008) MGI PMID:11029008 NCBI chrNW_004624937:816,752...845,866
Ensembl chrNW_004624937:816,759...845,458 		JBrowse link
brain segmentation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Egr2 early growth response 2 acts_upstream_of_or_within ISO (PMID:7903221) MGI PMID:7903221 NCBI chrNW_004624791:953,009...959,656
Ensembl chrNW_004624791:955,161...959,791 		JBrowse link
G Hoxa2 homeobox A2 acts_upstream_of_or_within ISO (PMID:9367425) MGI PMID:9367425 NCBI chrNW_004624739:3,501,671...3,504,939
Ensembl chrNW_004624739:3,501,817...3,504,750 		JBrowse link
G Mafb MAF bZIP transcription factor B acts_upstream_of_or_within ISO (PMID:7925021) MGI PMID:7925021 NCBI chrNW_004624919:1,337,269...1,340,607
Ensembl chrNW_004624919:1,339,228...1,340,208 		JBrowse link
central nervous system segmentation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Zic2 Zic family member 2 involved_in ISO (PMID:17490632) MGI PMID:17490632 NCBI chrNW_004624793:11,162,835...11,167,497
Ensembl chrNW_004624793:11,163,916...11,167,457 		JBrowse link
G Zic3 Zic family member 3 involved_in ISO (PMID:17490632) MGI PMID:17490632 NCBI chrNW_004624808:9,201,025...9,212,192
Ensembl chrNW_004624808:9,200,952...9,212,093 		JBrowse link
convergent extension involved in somitogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Sfrp1 secreted frizzled related protein 1 acts_upstream_of_or_within ISO (PMID:18257070) MGI PMID:18257070 NCBI chrNW_004624780:2,133,105...2,172,301
Ensembl chrNW_004624780:2,132,960...2,174,508 		JBrowse link
negative regulation of Notch signaling pathway involved in somitogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Lfng LFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase involved_in ISO (MGI:5545944|PMID:23072809) UniProt PMID:23072809 MGI:5545944 NCBI chrNW_004624740:30,392,342...30,404,003
Ensembl chrNW_004624740:30,392,079...30,404,068 		JBrowse link
P granule organization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Pld6 phospholipase D family member 6 involved_in ISO (MGI:4943609|PMID:21397848) UniProt PMID:21397848 MGI:4943609 NCBI chrNW_004624849:4,202,398...4,245,217
Ensembl chrNW_004624849:4,224,986...4,227,755 		JBrowse link
G Tdrd5 tudor domain containing 5 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624771:2,711,791...2,818,031 JBrowse link
G Tdrd7 tudor domain containing 7 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624825:3,302,796...3,376,971
Ensembl chrNW_004624825:3,303,041...3,386,606 		JBrowse link
G Tdrkh tudor and KH domain containing involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624772:19,447,092...19,463,796
Ensembl chrNW_004624772:19,444,049...19,463,788 		JBrowse link
regulation of cell migration involved in somitogenic axis elongation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ppp2r3a protein phosphatase 2 regulatory subunit B''alpha involved_in ISO (PMID:15687260) BHF-UCL PMID:15687260 NCBI chrNW_004624730:12,384,691...12,568,115
Ensembl chrNW_004624730:12,429,902...12,567,683 		JBrowse link
regulation of somitogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cdx1 caudal type homeobox 1 involved_in ISO (MGI:5301472|PMID:22015720) UniProt PMID:22015720 MGI:5301472 NCBI chrNW_004624774:9,479,173...9,494,962
Ensembl chrNW_004624774:9,479,255...9,494,061 		JBrowse link
G Cdx2 caudal type homeobox 2 involved_in ISO (MGI:5301472|PMID:22015720) UniProt PMID:22015720 MGI:5301472 NCBI chrNW_004624776:10,551,503...10,556,987
Ensembl chrNW_004624776:10,551,503...10,556,845 		JBrowse link
G Dll1 delta like canonical Notch ligand 1 involved_in ISO (MGI:5689216|PMID:26114479) UniProt PMID:26114479 MGI:5689216 NCBI chrNW_004624850:6,135,214...6,142,975
Ensembl chrNW_004624850:6,134,908...6,143,404 		JBrowse link
G Dmrt2 doublesex and mab-3 related transcription factor 2 acts_upstream_of_or_within ISO (PMID:17974128) MGI PMID:17974128 NCBI chrNW_004624736:5,721,984...5,730,558
Ensembl chrNW_004624736:5,722,404...5,730,633 		JBrowse link
G Lfng LFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase involved_in
acts_upstream_of_or_within		 ISO (PMID:19061953)
(PMID:19779553)		 UniProt
MGI		 PMID:19061953 PMID:19779553 NCBI chrNW_004624740:30,392,342...30,404,003
Ensembl chrNW_004624740:30,392,079...30,404,068 		JBrowse link
G Notch1 notch receptor 1 acts_upstream_of_or_within ISO (PMID:7789282) MGI PMID:7789282 NCBI chrNW_004624760:1,636,331...1,676,398
Ensembl chrNW_004624760:1,634,702...1,676,531 		JBrowse link
G Pax3 paired box 3 acts_upstream_of_or_within ISO (PMID:17974128) MGI PMID:17974128 NCBI chrNW_004624823:2,870,762...2,963,134
Ensembl chrNW_004624823:2,871,162...2,961,944 		JBrowse link
segment specification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dvl2 dishevelled segment polarity protein 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:12421720) Ensembl
MGI		 PMID:12421720 GO_REF:0000107 NCBI chrNW_004624786:9,843,580...9,851,538
Ensembl chrNW_004624786:9,844,157...9,851,301 		JBrowse link
G Hoxa2 homeobox A2 acts_upstream_of_or_within ISO (PMID:9367425) MGI PMID:9367425 NCBI chrNW_004624739:3,501,671...3,504,939
Ensembl chrNW_004624739:3,501,817...3,504,750 		JBrowse link
G Mafb MAF bZIP transcription factor B acts_upstream_of_or_within ISO (PMID:12701106) MGI PMID:12701106 NCBI chrNW_004624919:1,337,269...1,340,607
Ensembl chrNW_004624919:1,339,228...1,340,208 		JBrowse link
G Mllt3 MLLT3 super elongation complex subunit acts_upstream_of_or_within ISO (PMID:12242306) MGI PMID:12242306 NCBI chrNW_004624736:24,298,750...24,586,185 JBrowse link
G Msgn1 mesogenin 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:11124811) Ensembl
MGI		 PMID:11124811 GO_REF:0000107 NCBI chrNW_004624738:756,679...757,278
Ensembl chrNW_004624738:756,679...757,258 		JBrowse link
G Mtf2 metal response element binding transcription factor 2 involved_in ISO (MGI:4946172|PMID:21059868) UniProt PMID:21059868 MGI:4946172 NCBI chrNW_004624742:4,567,292...4,627,909
Ensembl chrNW_004624742:4,569,064...4,627,862 		JBrowse link
somite rostral/caudal axis specification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Epb41l5 erythrocyte membrane protein band 4.1 like 5 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:18794329) Ensembl
MGI		 PMID:18794329 GO_REF:0000107 NCBI chrNW_004624732:24,908,711...25,088,246
Ensembl chrNW_004624732:24,908,723...25,088,244 		JBrowse link
G Foxa2 forkhead box A2 acts_upstream_of_or_within ISO (PMID:11291865) MGI PMID:11291865 NCBI chrNW_004624741:22,645,580...22,649,722
Ensembl chrNW_004624741:22,645,519...22,649,854 		JBrowse link
G Gdf3 growth differentiation factor 3 acts_upstream_of_or_within ISO (PMID:16368929) MGI PMID:16368929 NCBI chrNW_004624860:4,968,624...4,970,362 JBrowse link
G Kdm6a lysine demethylase 6A acts_upstream_of_or_within ISO (PMID:22949634) MGI PMID:22949634 NCBI chrNW_004624887:1,065,173...1,279,660
Ensembl chrNW_004624887:1,065,883...1,279,186 		JBrowse link
G Lhx1 LIM homeobox 1 acts_upstream_of_or_within ISO (PMID:11291865) MGI PMID:11291865 NCBI chrNW_004624871:3,954,490...3,961,861
Ensembl chrNW_004624871:3,954,504...3,963,033 		JBrowse link
G Mesp2 mesoderm posterior bHLH transcription factor 2 acts_upstream_of_or_within ISO (PMID:20346937) MGI PMID:20346937 NCBI chrNW_004624768:16,832,008...16,834,697
Ensembl chrNW_004624768:16,830,795...16,834,798 		JBrowse link
G Nrarp NOTCH regulated ankyrin repeat protein involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:21998026) Ensembl
MGI		 PMID:21998026 GO_REF:0000107 NCBI chrNW_004624760:670,796...672,679
Ensembl chrNW_004624760:670,837...671,181 		JBrowse link
G Otx2 orthodenticle homeobox 2 acts_upstream_of_or_within ISO (PMID:11291865) MGI PMID:11291865 NCBI chrNW_004624884:1,830,645...1,840,213 JBrowse link
G Ripply1 ripply transcriptional repressor 1 acts_upstream_of_or_within ISO (PMID:20346937) MGI PMID:20346937 NCBI chrNW_004624803:9,868,707...9,879,909 JBrowse link
G Ripply2 ripply transcriptional repressor 2 involved_in
acts_upstream_of_or_within		 ISO (MGI:3613215|PMID:16326386)
(PMID:20346937)		 UniProt
MGI		 PMID:16326386 PMID:20346937 MGI:3613215 NCBI chrNW_004624799:10,750,928...10,755,797 JBrowse link
G Smad4 SMAD family member 4 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:9420335) Ensembl
MGI		 PMID:9420335 GO_REF:0000107 NCBI chrNW_004624778:14,570,025...14,629,950
Ensembl chrNW_004624778:14,570,348...14,630,325 		JBrowse link
G Tbx6 T-box transcription factor 6 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:20346937) MGI
Ensembl		 PMID:20346937 GO_REF:0000107 NCBI chrNW_004624782:13,169,096...13,174,498
Ensembl chrNW_004624782:13,169,719...13,174,056 		JBrowse link
G Tmed2 transmembrane p24 trafficking protein 2 acts_upstream_of_or_within ISO (PMID:20178780) MGI PMID:20178780 NCBI chrNW_004624747:23,389,262...23,399,962
Ensembl chrNW_004624747:23,389,262...23,399,955 		JBrowse link
somite specification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cobl cordon-bleu WH2 repeat protein involved_in ISO (MGI:76306|PMID:7586755) BHF-UCL PMID:7586755 MGI:76306 NCBI chrNW_004624740:3,332,977...3,399,915 JBrowse link
G Dll1 delta like canonical Notch ligand 1 acts_upstream_of_or_within ISO (PMID:14960495) MGI PMID:14960495 NCBI chrNW_004624850:6,135,214...6,142,975
Ensembl chrNW_004624850:6,134,908...6,143,404 		JBrowse link
G Meox1 mesenchyme homeobox 1 acts_upstream_of_or_within ISO (PMID:12925591) MGI PMID:12925591 NCBI chrNW_004624795:1,032,278...1,041,635
Ensembl chrNW_004624795:1,032,546...1,040,007 		JBrowse link
G Meox2 mesenchyme homeobox 2 acts_upstream_of_or_within ISO (PMID:12925591) MGI PMID:12925591 NCBI chrNW_004624739:14,483,750...14,547,491
Ensembl chrNW_004624739:14,483,789...14,547,374 		JBrowse link
somitogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Abi1 abl interactor 1 acts_upstream_of_or_within ISO (PMID:15755804) MGI PMID:15755804 NCBI chrNW_004624796:2,312,005...2,431,284 JBrowse link
G Atm ATM serine/threonine kinase acts_upstream_of_or_within ISO (PMID:16687486) MGI PMID:16687486 NCBI chrNW_004624784:2,933,172...3,080,131
Ensembl chrNW_004624784:2,937,499...3,078,216 		JBrowse link
G Axin2 axin 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:12636920) Ensembl
MGI		 PMID:12636920 GO_REF:0000107 NCBI chrNW_004624870:2,803,743...2,832,489
Ensembl chrNW_004624870:2,800,873...2,832,626 		JBrowse link
G Bmpr1a bone morphogenetic protein receptor type 1A acts_upstream_of_or_within ISO (PMID:16943278) MGI PMID:16943278 NCBI chrNW_004624841:218,642...304,744
Ensembl chrNW_004624841:219,133...265,397 		JBrowse link
G Crb2 crumbs cell polarity complex component 2 involved_in ISO (MGI:5296388|PMID:22072575) UniProt PMID:22072575 MGI:5296388 NCBI chrNW_004624760:11,576,683...11,598,354
Ensembl chrNW_004624760:11,579,163...11,598,287 		JBrowse link
G Dll1 delta like canonical Notch ligand 1 acts_upstream_of_or_within
involved_in		 ISO (PMID:15902259)
(MGI:5545944|PMID:23072809)		 MGI
UniProt		 PMID:15902259 PMID:23072809 MGI:5545944 NCBI chrNW_004624850:6,135,214...6,142,975
Ensembl chrNW_004624850:6,134,908...6,143,404 		JBrowse link
G Dll3 delta like canonical Notch ligand 3 acts_upstream_of_or_within ISO (PMID:9272948)
(PMID:15170697)		 MGI PMID:9272948 PMID:15170697 NCBI chrNW_004624794:12,806,299...12,816,048
Ensembl chrNW_004624794:12,806,868...12,815,582 		JBrowse link
G Epb41l5 erythrocyte membrane protein band 4.1 like 5 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:18794329) Ensembl
MGI		 PMID:18794329 GO_REF:0000107 NCBI chrNW_004624732:24,908,711...25,088,246
Ensembl chrNW_004624732:24,908,723...25,088,244 		JBrowse link
G Foxb1 forkhead box B1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624781:12,182,728...12,185,228
Ensembl chrNW_004624781:12,183,444...12,185,185 		JBrowse link
G Foxc1 forkhead box C1 involved_in ISO (MGI:2150572|PMID:11562355) UniProt PMID:11562355 MGI:2150572 NCBI chrNW_004624756:23,060,065...23,062,407
Ensembl chrNW_004624756:23,060,751...23,062,343 		JBrowse link
G Foxc2 forkhead box C2 involved_in ISO (MGI:2150572|PMID:11562355) UniProt PMID:11562355 MGI:2150572 NCBI chrNW_004624746:2,632,547...2,634,867
Ensembl chrNW_004624746:2,632,619...2,634,085 		JBrowse link
G Foxf1 forkhead box F1 acts_upstream_of_or_within ISO (PMID:11124112) MGI PMID:11124112 NCBI chrNW_004624746:2,599,211...2,603,031
Ensembl chrNW_004624746:2,599,106...2,603,336 		JBrowse link
G Hes7 hes family bHLH transcription factor 7 acts_upstream_of_or_within ISO (PMID:15170214)
(PMID:11641270), (PMID:19779553)		 MGI PMID:11641270 PMID:15170214 PMID:19779553 NCBI chrNW_004624786:10,692,329...10,699,346
Ensembl chrNW_004624786:10,692,329...10,695,132 		JBrowse link
G Kat2a lysine acetyltransferase 2A acts_upstream_of_or_within ISO (PMID:17325035)
(PMID:15937931)		 MGI PMID:15937931 PMID:17325035 NCBI chrNW_004624795:1,782,367...1,787,408
Ensembl chrNW_004624795:1,782,366...1,788,951 		JBrowse link
G Lef1 lymphoid enhancer binding factor 1 acts_upstream_of_or_within ISO (PMID:15545629)
(PMID:10090727)		 MGI PMID:10090727 PMID:15545629 NCBI chrNW_004624830:1,320,034...1,422,774
Ensembl chrNW_004624830:1,321,387...1,424,389 		JBrowse link
G Lfng LFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase involved_in
acts_upstream_of_or_within		 ISO (MGI:5545944|PMID:23072809)
(PMID:18234727)		 UniProt
MGI		 PMID:18234727 PMID:23072809 MGI:5545944 NCBI chrNW_004624740:30,392,342...30,404,003
Ensembl chrNW_004624740:30,392,079...30,404,068 		JBrowse link
G Lrp6 LDL receptor related protein 6 acts_upstream_of_or_within ISO (PMID:19795512) MGI PMID:19795512 NCBI chrNW_004624752:25,605,444...25,756,573
Ensembl chrNW_004624752:25,605,302...25,751,893 		JBrowse link
G Med12 mediator complex subunit 12 acts_upstream_of_or_within ISO (PMID:20589884) MGI PMID:20589884 NCBI chrNW_004624903:1,412,346...1,436,474
Ensembl chrNW_004624903:1,412,474...1,436,474 		JBrowse link
G Mesp2 mesoderm posterior bHLH transcription factor 2 acts_upstream_of_or_within ISO (PMID:15902259) MGI PMID:15902259 NCBI chrNW_004624768:16,832,008...16,834,697
Ensembl chrNW_004624768:16,830,795...16,834,798 		JBrowse link
G Mib1 MIB E3 ubiquitin protein ligase 1 acts_upstream_of_or_within ISO (PMID:16000382) MGI PMID:16000382 NCBI chrNW_004624770:9,936,202...10,051,018
Ensembl chrNW_004624770:9,941,706...10,051,024 		JBrowse link
G Msgn1 mesogenin 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:11124811), (PMID:21750544) Ensembl
MGI		 PMID:11124811 PMID:21750544 GO_REF:0000107 NCBI chrNW_004624738:756,679...757,278
Ensembl chrNW_004624738:756,679...757,258 		JBrowse link
G Myf5 myogenic factor 5 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:10929709)
(PMID:19531352)
(PMID:8565825)		 MGI
Ensembl		 PMID:8565825 PMID:10929709 PMID:19531352 GO_REF:0000107 NCBI chrNW_004624837:33,735...36,052
Ensembl chrNW_004624837:33,864...35,837 		JBrowse link
G Myf6 myogenic factor 6 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:7588068) Ensembl
MGI		 PMID:7588068 GO_REF:0000107 NCBI chrNW_004624837:24,711...29,217
Ensembl chrNW_004624837:24,775...25,973 		JBrowse link
G Nckap1 NCK associated protein 1 acts_upstream_of_or_within ISO (PMID:16831833) MGI PMID:16831833 NCBI chrNW_004624844:4,679,840...4,773,617
Ensembl chrNW_004624844:4,676,741...4,773,538 		JBrowse link
G Nkx3-1 NK3 homeobox 1 involved_in ISO (MGI:1267297|PMID:9621431) BHF-UCL PMID:9621431 MGI:1267297 NCBI chrNW_004624758:18,874,399...18,876,982
Ensembl chrNW_004624758:18,875,475...18,876,971 		JBrowse link
G Nle1 notchless homolog 1 acts_upstream_of_or_within ISO (PMID:24875805) MGI PMID:24875805 NCBI chrNW_004624875:2,997,648...3,006,345
Ensembl chrNW_004624875:2,998,006...3,006,303 		JBrowse link
G Palb2 partner and localizer of BRCA2 acts_upstream_of_or_within ISO (PMID:20484223) MGI PMID:20484223 NCBI chrNW_004624782:8,752,510...8,780,972
Ensembl chrNW_004624782:8,751,866...8,780,884 		JBrowse link
G Pax1 paired box 1 acts_upstream_of_or_within ISO (PMID:16093716) MGI PMID:16093716 NCBI chrNW_004624741:22,009,733...22,017,377
Ensembl chrNW_004624741:22,007,778...22,017,325 		JBrowse link
G Pcdh8 protocadherin 8 acts_upstream_of_or_within ISO (PMID:12591245) MGI PMID:12591245 NCBI chrNW_004624748:14,285,553...14,290,236
Ensembl chrNW_004624748:14,285,475...14,290,166 		JBrowse link
G Plxna2 plexin A2 involved_in ISO (MGI:4355631|PMID:19666519) BHF-UCL PMID:19666519 MGI:4355631 NCBI chrNW_004624807:3,643,283...3,829,817
Ensembl chrNW_004624807:3,643,255...3,834,128 		JBrowse link
G Pofut1 protein O-fucosyltransferase 1 acts_upstream_of_or_within ISO (PMID:12697902) MGI PMID:12697902 NCBI chrNW_004624741:338,028...364,414
Ensembl chrNW_004624741:337,148...364,301 		JBrowse link
G Poglut1 protein O-glucosyltransferase 1 acts_upstream_of_or_within ISO (PMID:9636176) MGI PMID:9636176 NCBI chrNW_004624731:28,682,594...28,701,841
Ensembl chrNW_004624731:28,682,636...28,702,806 		JBrowse link
G Ppp2r3a protein phosphatase 2 regulatory subunit B''alpha involved_in ISO (PMID:15687260) BHF-UCL PMID:15687260 NCBI chrNW_004624730:12,384,691...12,568,115
Ensembl chrNW_004624730:12,429,902...12,567,683 		JBrowse link
G Prkdc protein kinase, DNA-activated, catalytic subunit acts_upstream_of_or_within ISO (PMID:16687486) MGI PMID:16687486 NCBI chrNW_004624735:7,534,483...7,702,079
Ensembl chrNW_004624735:7,534,506...7,700,305 		JBrowse link
G Psen1 presenilin 1 acts_upstream_of_or_within ISO (PMID:9153393)
(PMID:10557208), (PMID:19779553)		 MGI PMID:9153393 PMID:10557208 PMID:19779553 NCBI chrNW_004624734:28,200,358...28,272,684
Ensembl chrNW_004624734:28,200,140...28,272,743 		JBrowse link
G Psen2 presenilin 2 acts_upstream_of_or_within ISO (PMID:10557208), (PMID:19779553) MGI PMID:10557208 PMID:19779553 NCBI chrNW_004624771:17,183,538...17,205,460
Ensembl chrNW_004624771:17,183,447...17,224,188 		JBrowse link
G Rbpj recombination signal binding protein for immunoglobulin kappa J region acts_upstream_of_or_within ISO (PMID:19779553) MGI PMID:19779553 NCBI chrNW_004624755:6,176,497...6,298,034
Ensembl chrNW_004624755:6,176,497...6,298,225 		JBrowse link
G Ripply2 ripply transcriptional repressor 2 acts_upstream_of_or_within
involved_in		 ISO (PMID:17531978)
(MGI:3613215|PMID:16326386)		 MGI
UniProt		 PMID:16326386 PMID:17531978 MGI:3613215 NCBI chrNW_004624799:10,750,928...10,755,797 JBrowse link
G Ror2 receptor tyrosine kinase like orphan receptor 2 acts_upstream_of_or_within ISO (PMID:14745966) MGI PMID:14745966 NCBI chrNW_004624868:479,303...732,723
Ensembl chrNW_004624868:479,290...731,650 		JBrowse link
G Sema3c semaphorin 3C involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624739:29,484,557...29,642,981
Ensembl chrNW_004624739:29,484,461...29,626,619 		JBrowse link
G Sfrp1 secreted frizzled related protein 1 involved_in
acts_upstream_of_or_within		 ISO (MGI:1349347|PMID:10654605)
(PMID:16467359)		 BHF-UCL
MGI		 PMID:10654605 PMID:16467359 MGI:1349347 NCBI chrNW_004624780:2,133,105...2,172,301
Ensembl chrNW_004624780:2,132,960...2,174,508 		JBrowse link
G Sfrp2 secreted frizzled related protein 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:16467359) Ensembl
MGI		 PMID:16467359 GO_REF:0000107 NCBI chrNW_004624858:5,052,736...5,061,495
Ensembl chrNW_004624858:5,052,518...5,061,591 		JBrowse link
G Smad3 SMAD family member 3 acts_upstream_of_or_within ISO (PMID:15183723) MGI PMID:15183723 NCBI chrNW_004624781:5,795,652...5,890,047
Ensembl chrNW_004624781:5,795,652...5,890,371 		JBrowse link
G Taf10 TATA-box binding protein associated factor 10 involved_in ISO (PMID:28893950) MGI PMID:28893950 NCBI chrNW_004624817:8,103,065...8,104,435
Ensembl chrNW_004624817:8,103,065...8,104,420 		JBrowse link
G Tbx18 T-box transcription factor 18 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:15155583) TreeGrafter
MGI		 PMID:15155583 GO_REF:0000118 NCBI chrNW_004624799:9,694,167...9,721,468
Ensembl chrNW_004624799:9,694,374...9,719,385 		JBrowse link
G Tbxt T-box transcription factor T involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:8293872)
(PMID:15384171)
(PMID:16835439)		 TreeGrafter
MGI
Ensembl		 PMID:8293872 PMID:15384171 PMID:16835439 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004624785:13,058,520...13,066,607
Ensembl chrNW_004624785:13,058,444...13,066,719 		JBrowse link
G Tcap titin-cap involved_in ISO (MGI:1314551|PMID:9817758) BHF-UCL PMID:9817758 MGI:1314551 NCBI chrNW_004624795:3,411,744...3,414,229
Ensembl chrNW_004624795:3,410,951...3,413,052 		JBrowse link
G Tcf15 transcription factor 15 acts_upstream_of_or_within ISO (PMID:8955271) MGI PMID:8955271 NCBI chrNW_004624741:1,689,397...1,694,934
Ensembl chrNW_004624741:1,689,431...1,694,815 		JBrowse link
G Tmed2 transmembrane p24 trafficking protein 2 acts_upstream_of_or_within ISO (PMID:20178780) MGI PMID:20178780 NCBI chrNW_004624747:23,389,262...23,399,962
Ensembl chrNW_004624747:23,389,262...23,399,955 		JBrowse link
G Tp53 tumor protein p53 acts_upstream_of_or_within ISO (PMID:17320900) MGI PMID:17320900 NCBI chrNW_004624786:10,266,316...10,282,664
Ensembl chrNW_004624786:10,263,518...10,271,218 		JBrowse link
G Ttn titin involved_in ISO (MGI:1314551|PMID:9817758) BHF-UCL PMID:9817758 MGI:1314551 NCBI chrNW_004624844:484,593...760,155 JBrowse link
G Wnt3a Wnt family member 3A acts_upstream_of_or_within ISO (PMID:12636920)
(PMID:16291790), (PMID:8299937)		 MGI PMID:8299937 PMID:12636920 PMID:16291790 NCBI chrNW_004624937:816,752...845,866
Ensembl chrNW_004624937:816,759...845,458 		JBrowse link
G Wnt5a Wnt family member 5A acts_upstream_of_or_within ISO (PMID:19795512) MGI PMID:19795512 NCBI chrNW_004624822:1,824,378...1,843,599
Ensembl chrNW_004624822:1,825,238...1,841,288 		JBrowse link
G Xrcc2 X-ray repair cross complementing 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:17116431) Ensembl
MGI		 PMID:17116431 GO_REF:0000107 NCBI chrNW_004624800:4,352,566...4,389,707
Ensembl chrNW_004624800:4,355,539...4,390,016 		JBrowse link
G Zeb2 zinc finger E-box binding homeobox 2 acts_upstream_of_or_within ISO (PMID:16157277), (PMID:16598713) MGI PMID:16157277 PMID:16598713 NCBI chrNW_004624732:44,097,348...44,226,701
Ensembl chrNW_004624732:44,101,613...44,139,997 		JBrowse link
specification of anterior mesonephric tubule identity term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Osr1 odd-skipped related transcription factor 1 involved_in ISO (MGI:3697513|PMID:16790474) UniProt PMID:16790474 MGI:3697513 NCBI chrNW_004624738:2,136,228...2,559,092
Ensembl chrNW_004624738:2,136,151...2,138,441 		JBrowse link
specification of loop of Henle identity term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Hes5 hes family bHLH transcription factor 5 involved_in ISO (MGI:3576186|PMID:15821257) UniProt PMID:15821257 MGI:3576186 NCBI chrNW_004624818:7,516,279...7,517,654
Ensembl chrNW_004624818:7,516,189...7,518,734 		JBrowse link
G Irx1 iroquois homeobox 1 involved_in ISO (MGI:3758158|PMID:17875669) UniProt PMID:17875669 MGI:3758158 NCBI chrNW_004624751:2,005,849...2,014,775
Ensembl chrNW_004624751:2,010,004...2,014,721 		JBrowse link
G Irx2 iroquois homeobox 2 involved_in ISO (MGI:3758158|PMID:17875669) UniProt PMID:17875669 MGI:3758158 NCBI chrNW_004624751:1,453,390...1,457,500
Ensembl chrNW_004624751:1,453,390...1,457,470 		JBrowse link
G Irx3 iroquois homeobox 3 involved_in ISO (MGI:3758158|PMID:17875669) UniProt PMID:17875669 MGI:3758158 NCBI chrNW_004624757:2,543,968...2,547,452
Ensembl chrNW_004624757:2,543,992...2,547,464 		JBrowse link
specification of posterior mesonephric tubule identity term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Osr1 odd-skipped related transcription factor 1 involved_in ISO (MGI:3697513|PMID:16790474) UniProt PMID:16790474 MGI:3697513 NCBI chrNW_004624738:2,136,228...2,559,092
Ensembl chrNW_004624738:2,136,151...2,138,441 		JBrowse link
thorax and anterior abdomen determination term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Neurog1 neurogenin 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624733:11,497,872...11,499,957
Ensembl chrNW_004624733:11,498,249...11,498,974 		JBrowse link
G Tifab TIFA inhibitor involved_in ISO (PMID:23419067) CAFA PMID:23419067 NCBI chrNW_004624733:11,578,934...11,587,250 JBrowse link
G Wt1 WT1 transcription factor involved_in ISO (MGI:62488|PMID:8395349) UniProt PMID:8395349 MGI:62488 NCBI chrNW_004624766:20,899,546...20,937,084
Ensembl chrNW_004624766:20,900,676...20,937,202 		JBrowse link
trunk neural crest cell migration term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Lama5 laminin subunit alpha 5 acts_upstream_of_or_within ISO (PMID:16316641) MGI PMID:16316641 NCBI chrNW_004624741:28,156,956...28,217,133
Ensembl chrNW_004624741:28,157,172...28,217,113 		JBrowse link
G Nrp2 neuropilin 2 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:16319111) MGI
Ensembl		 PMID:16319111 GO_REF:0000107 NCBI chrNW_004624765:10,372,172...10,484,766
Ensembl chrNW_004624765:10,372,099...10,484,963 		JBrowse link
G Sema3f semaphorin 3F acts_upstream_of_or_within ISO (PMID:16319111) MGI PMID:16319111 NCBI chrNW_004624730:4,035,909...4,064,796
Ensembl chrNW_004624730:4,035,874...4,065,667 		JBrowse link
G Shh sonic hedgehog signaling molecule acts_upstream_of ISO (PMID:15337776) MGI PMID:15337776 NCBI chrNW_004624800:2,202,986...2,215,309
Ensembl chrNW_004624800:2,203,393...2,212,068 		JBrowse link
ventral trunk neural crest cell migration term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Nrp1 neuropilin 1 involved_in ISO (MGI:3848580|PMID:19386662) ParkinsonsUK-UCL PMID:19386662 MGI:3848580 NCBI chrNW_004624805:8,438,485...8,574,845
Ensembl chrNW_004624805:8,438,498...8,574,508 		JBrowse link
G Nrp2 neuropilin 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624765:10,372,172...10,484,766
Ensembl chrNW_004624765:10,372,099...10,484,963 		JBrowse link
G Sema3a semaphorin 3A involved_in ISO (MGI:3848580|PMID:19386662) ParkinsonsUK-UCL PMID:19386662 MGI:3848580 NCBI chrNW_004624739:32,104,014...32,426,980
Ensembl chrNW_004624739:32,105,824...32,309,271 		JBrowse link
G Sema3f semaphorin 3F involved_in ISO (MGI:3848580|PMID:19386662) ParkinsonsUK-UCL PMID:19386662 MGI:3848580 NCBI chrNW_004624730:4,035,909...4,064,796
Ensembl chrNW_004624730:4,035,874...4,065,667 		JBrowse link
Wnt signaling pathway involved in somitogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dkk1 dickkopf WNT signaling pathway inhibitor 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:18257070) Ensembl
MGI		 PMID:18257070 GO_REF:0000107 NCBI chrNW_004624791:11,313,139...11,316,998
Ensembl chrNW_004624791:11,313,142...11,315,982 		JBrowse link
G Lrp6 LDL receptor related protein 6 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:15469977) TreeGrafter
MGI		 PMID:15469977 GO_REF:0000118 NCBI chrNW_004624752:25,605,444...25,756,573
Ensembl chrNW_004624752:25,605,302...25,751,893 		JBrowse link
G Sfrp1 secreted frizzled related protein 1 acts_upstream_of_or_within ISO (PMID:18257070) MGI PMID:18257070 NCBI chrNW_004624780:2,133,105...2,172,301
Ensembl chrNW_004624780:2,132,960...2,174,508 		JBrowse link
G Sfrp2 secreted frizzled related protein 2 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:18257070) MGI
Ensembl		 PMID:18257070 GO_REF:0000107 NCBI chrNW_004624858:5,052,736...5,061,495
Ensembl chrNW_004624858:5,052,518...5,061,591 		JBrowse link
zygotic determination of anterior/posterior axis, embryo term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Nckap1 NCK associated protein 1 acts_upstream_of_or_within ISO (PMID:16831833) MGI PMID:16831833 NCBI chrNW_004624844:4,679,840...4,773,617
Ensembl chrNW_004624844:4,676,741...4,773,538 		JBrowse link
G Pcsk6 proprotein convertase subtilisin/kexin type 6 acts_upstream_of_or_within ISO (PMID:10809672) MGI PMID:10809672 NCBI chrNW_004624768:3,336,374...3,517,697
Ensembl chrNW_004624768:3,331,207...3,516,394 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 15225
    multicellular organismal process 7125
      pattern specification process 464
        regionalization 427
          segmentation 107
            appendage segmentation + 0
            blastoderm segmentation + 22
            brain segmentation 3
            central nervous system segmentation + 5
            renal system segmentation 0
            segment specification + 15
            somitogenesis + 73
            trunk segmentation + 6
Path 2
Term Annotations click to browse term
  biological_process 15225
    developmental process 6175
      anatomical structure development 5812
        multicellular organism development 4723
          pattern specification process 464
            regionalization 427
              segmentation 107
                appendage segmentation + 0
                blastoderm segmentation + 22
                brain segmentation 3
                central nervous system segmentation + 5
                renal system segmentation 0
                segment specification + 15
                somitogenesis + 73
                trunk segmentation + 6
paths to the root